orange1.1g025545m.v1.1, orange1.1g025545m.v1.1_Csinensis_154_v1.1 (mRNA) Citrus sinensis
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of orange1.1g025545m.v1.1 vs. DB:SwissProt
Match: RM21_ARATH (50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL21M PE=2 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 3.267e-60 Identity = 146/252 (57.94%), Postives = 178/252 (70.63%), Query Frame = 1 Query: 1 MAHRRCLHVLSRHAAALLSLKTPPTLP------FS-TSISLKGLTPFQHRSLISSTLGPTNW--SHYRHFSSNKNXXXXXXXXXXXXXXXXXXXXXXXXXXIGDTVPDLGREYTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQGIEK 729
MA RC LSR A + S+ ++ FS TSIS + P +RSL + ++W S R FSSN D + ++ + ++D+E E +E D ++ REY+ EK EA EIGYKV+GPL+ S+R+FK YEP FA+VQIGSHQFKVSNGDSIFTE+LKFC++NDKL L KVLLLGS QTIIGRP++PDA VHAVVEEHALD KV+IFKKKRRKNYRRT+GHRQELTKLRI DIQGIEK
Sbjct: 1 MASLRCFRELSRRATTVFSINQTRSISSFHGIEFSGTSISHGTVIP--NRSLTRNLPWYSHWYRSQDRCFSSNTKDTDEDEESSEGEDDDEEEGEDFEDS--ADM--EVEREYSPAEKVEEAEEIGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIEK 246
BLAST of orange1.1g025545m.v1.1 vs. DB:SwissProt
Match: RK21_SPIOL (50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL21 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.619e-19 Identity = 63/108 (58.33%), Postives = 80/108 (74.07%), Query Frame = 1 Query: 403 EPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQGIE 726
E FAVV IGS Q+ V G I+T+RLK VNDK++LNKVLL+G++ T IG P+V +AAVHAVVEE LD KVI+FK K++KNYRR GHRQ +T+++I I G E
Sbjct: 121 EEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYE 228
BLAST of orange1.1g025545m.v1.1 vs. DB:SwissProt
Match: RK21_ARATH (50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL21 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 7.481e-15 Identity = 59/136 (43.38%), Postives = 86/136 (63.24%), Query Frame = 1 Query: 322 EKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQGIEK 729
E E E +I V+ + + K E FAV+ +G Q+ V G ++T+RLK V+D+++LNKVLL+G++ T IG+P+V +A VHAVVE L+ KV++FK K +K YRR GHRQ T++RI I G E+
Sbjct: 71 EAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHRQPNTRIRITGITGYEE 206
BLAST of orange1.1g025545m.v1.1 vs. DB:SwissProt
Match: RL21_RHOCS (50S ribosomal protein L21 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rplU PE=3 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 1.031e-11 Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 1 Query: 412 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQ 717
FAV++ G Q+KV+NGD I E+L + + L+ VL++ +T IG P+V AAV A V + K+IIFKKKRR+NYRR GHRQ+LT LRI IQ
Sbjct: 2 FAVIRTGGKQYKVANGDVIKVEKL-VADAGATVTLDDVLMVSDAGKTTIGTPVVQGAAVTAEVVAQSRGPKIIIFKKKRRQNYRRKNGHRQDLTVLRITGIQ 102
BLAST of orange1.1g025545m.v1.1 vs. DB:SwissProt
Match: RL21_MAGSA (50S ribosomal protein L21 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=rplU PE=3 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 1.615e-11 Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 1 Query: 412 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDI 714
FAV+Q G Q+KV++GD I E+L E +++L++VL++G + IG P+V A+V A V A K+I+FKK+RR+N RR GHRQ+LT LRI DI
Sbjct: 2 FAVIQTGGKQYKVASGDVIRVEKLA-GEAGAEVVLDQVLMVGDK----IGVPVVAGASVKATVVAQARGEKIIVFKKRRRQNSRRKNGHRQDLTILRITDI 97
BLAST of orange1.1g025545m.v1.1 vs. DB:SwissProt
Match: RL21_DICTD (50S ribosomal protein L21 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) OX=515635 GN=rplU PE=3 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 1.901e-11 Identity = 48/101 (47.52%), Postives = 65/101 (64.36%), Query Frame = 1 Query: 412 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDI 714
F VV+ G Q+KVS G + E+LK V D+++L+KVLL+G + + IIG+P V A V A V KVI+FK KR+K+YRR GHRQ T+L I +I
Sbjct: 2 FVVVETGGKQYKVSVGSMVNVEKLK-ANVGDEVVLDKVLLVGKEDEVIIGQPYVEGAKVIAKVVRQDKYPKVIVFKFKRKKHYRRKYGHRQPYTQLSIKEI 101
BLAST of orange1.1g025545m.v1.1 vs. DB:SwissProt
Match: RL21_CLOK5 (50S ribosomal protein L21 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) OX=431943 GN=rplU PE=3 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 4.022e-11 Identity = 43/101 (42.57%), Postives = 65/101 (64.36%), Query Frame = 1 Query: 412 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDI 714
+AVV G Q+KVS GD I+ E+L+ EV+ + L+KVL++ ++G+P+V A V A V + K+I+FK K +K+YR+ +GHRQ TKL+I I
Sbjct: 2 YAVVATGGKQYKVSEGDIIYVEKLE-AEVDSTIELDKVLMINKDEGLVVGKPVVEGAKVKAKVLKQGKAKKIIVFKYKPKKDYRKKQGHRQPYTKLQIEKI 101
BLAST of orange1.1g025545m.v1.1 vs. DB:SwissProt
Match: RL21_CLOK1 (50S ribosomal protein L21 OS=Clostridium kluyveri (strain NBRC 12016) OX=583346 GN=rplU PE=3 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 4.022e-11 Identity = 43/101 (42.57%), Postives = 65/101 (64.36%), Query Frame = 1 Query: 412 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDI 714
+AVV G Q+KVS GD I+ E+L+ EV+ + L+KVL++ ++G+P+V A V A V + K+I+FK K +K+YR+ +GHRQ TKL+I I
Sbjct: 2 YAVVATGGKQYKVSEGDIIYVEKLE-AEVDSTIELDKVLMINKDEGLVVGKPVVEGAKVKAKVLKQGKAKKIIVFKYKPKKDYRKKQGHRQPYTKLQIEKI 101
BLAST of orange1.1g025545m.v1.1 vs. DB:SwissProt
Match: RL21_RICBR (50S ribosomal protein L21 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rplU PE=3 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 9.167e-11 Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 1 Query: 412 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQ-TIIGRPMVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDI 714
FAV++ G Q+KV I E+++ E+ K+ LN+VL++G + + IG P+V A V A + D K+I+FKKKRRKNYRR GHRQELT+L+I+DI
Sbjct: 2 FAVIKAGGKQYKVDQNSVIKVEKIE-GELGSKIQLNQVLMMGEYSKPSFIGTPLVKGAVVTAEITNQLRDNKIIVFKKKRRKNYRRKAGHRQELTELKILDI 102
BLAST of orange1.1g025545m.v1.1 vs. DB:SwissProt
Match: RL21_RICB8 (50S ribosomal protein L21 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=rplU PE=3 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 9.167e-11 Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 1 Query: 412 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQ-TIIGRPMVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDI 714
FAV++ G Q+KV I E+++ E+ K+ LN+VL++G + + IG P+V A V A + D K+I+FKKKRRKNYRR GHRQELT+L+I+DI
Sbjct: 2 FAVIKAGGKQYKVDQNSVIKVEKIE-GELGSKIQLNQVLMMGEYSKPSFIGTPLVKGAVVTAEITNQLRDNKIIVFKKKRRKNYRRKAGHRQELTELKILDI 102 The following BLAST results are available for this feature:
BLAST of orange1.1g025545m.v1.1 vs. DB:SwissProt
Analysis Date: 2018-06-08 (C. sinensis v1.1 CDS) Total hits: 10 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >orange1.1g025545m.v1.1_Csinensis_154_v1.1 ID=orange1.1g025545m.v1.1_Csinensis_154_v1.1; Name=orange1.1g025545m.v1.1; organism=Citrus sinensis; type=mRNA; length=2525bpback to top mRNA from alignment at scaffold00010:2205342..2207866- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2525bp; location=Sequence derived from: scaffold00010:2205342..2207866- (Citrus sinensisback to top Coding sequence (CDS) from alignment at scaffold00010:2205342..2207866- >orange1.1g025545m.v1.1_Csinensis_154_v1.1 ID=orange1.1g025545m.v1.1_Csinensis_154_v1.1; Name=orange1.1g025545m.v1.1; organism=Citrus sinensis; type=CDS; length=756bp; location=Sequence derived from: scaffold00010:2205342..2207866- (Citrus sinensisback to top |