orange1.1g025546m.v1.1, orange1.1g025546m.v1.1_Csinensis_154_v1.1 (mRNA) Citrus sinensis

Transcript Overview


Name	orange1.1g025546m.v1.1
Unique Name	orange1.1g025546m.v1.1_Csinensis_154_v1.1
Type	mRNA
Organism	Citrus sinensis (Sweet orange)
Sequence length	2347

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus sinensis genome v1.1 (JGI)	2014-07-01
C. sinensis v1.1 CDS	2018-06-08

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cccsL470	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cccsL471	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cmcsL098	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmcsL099	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmcsL100	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cscsR015	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
csfhR051	Fortunella hindsii genome v1.0	Fortunella hindsii
csfhR054	Fortunella hindsii genome v1.0	Fortunella hindsii
csfhR062	Fortunella hindsii genome v1.0	Fortunella hindsii
csptR020	Poncirus trifoliata genome v1.3.1 (JGI)	Poncirus trifoliata
csptR021	Poncirus trifoliata genome v1.3.1 (JGI)	Poncirus trifoliata
csptR022	Poncirus trifoliata genome v1.3.1 (JGI)	Poncirus trifoliata
clacsL080	Citrus limon L. Burm f. genome v1.0 - Alternative	Citrus limon
clacsL081	Citrus limon L. Burm f. genome v1.0 - Alternative	Citrus limon
clacsL082	Citrus limon L. Burm f. genome v1.0 - Alternative	Citrus limon
cscsiR017	Citrus sinensis Valencia genome v1.0 (HZAU)	Citrus sinensis
cscsiR019	Citrus sinensis Valencia genome v1.0 (HZAU)	Citrus sinensis
cscsiR020	Citrus sinensis Valencia genome v1.0 (HZAU)	Citrus sinensis
caucsL071	Citrus australis genome v1.0 (UQ)	Citrus australis
clecsL0802	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecsL0803	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecsL0871	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecsL0872	Citrus limon cv. Eureka genome v1.0	Citrus limon
csdvaR007	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
csdvaR009	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
csdvbR004	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
csdvbR005	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
csdvbR006	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
csswoR018	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
csswoR019	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
csswoR020	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
cszkR013	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
cszkR015	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
csswR018	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
csswR020	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
cmjcsL119	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
cmjcsL120	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
cmjcsL256	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
csfhsR022	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
csfhsR025	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cscsnR0031	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cscsnR0033	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cscsnR0034	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cscsnR0035	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cscsnR0036	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
csminR0037	Citrus inodora CRC3784 genome v1.0	Citrus inodora
csminR0039	Citrus inodora CRC3784 genome v1.0	Citrus inodora
csminR0040	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cseglR0056	Citrus glauca CRC3463 genome v1	Citrus glauca
cseglR0063	Citrus glauca CRC3463 genome v1	Citrus glauca
ccrcsL0000	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcsL0057	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcsL0058	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcsL0611	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcsL1153	Citrus australasica CRC3672 genome v1	Citrus australasica
cscsgR018	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
cscsgR020	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
cscsgR021	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
abhcsL079	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
abhcsL080	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
abhcsL214	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
cizcsL238	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cizcsL320	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cizcsL352	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cllcsL078	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cllcsL336	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cmxcsL121	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmxcsL533	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmmcsL162	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
cmmcsL163	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
caacsL104	Citrus australasica cv. AZM genome v1.0	Citrus australasica
caacsL609	Citrus australasica cv. AZM genome v1.0	Citrus australasica
chhcsL656	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
chhcsL708	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
csmpkR020	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
csmpkR021	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
csmpkR023	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
clhcsL601	Clausena lansium cv. HP genome v1.0	Clausena lansium
clhcsL602	Clausena lansium cv. HP genome v1.0	Clausena lansium
csmpjR020	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
csmpjR022	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
csmpjR023	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
aeacsL167	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
aeacsL168	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
aeacsL347	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
cigcsL150	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
cigcsL518	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
cmhcsL081	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmhcsL083	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cslssR021	Luvunga scandens cv. SYT genome v1.0	Luvunga scandens
cslssR024	Luvunga scandens cv. SYT genome v1.0	Luvunga scandens
clxcsL286	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
clxcsL287	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
clxcsL355	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
cscsjR0026	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cscsjR0027	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cscsjR0028	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cscsjR0029	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cscsjR0031	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
csneiR019	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
csneiR020	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cracsL0080	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cracsL0081	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cracsL0219	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cracsL0858	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cchcsL076	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
cchcsL077	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
ciucsL0144	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucsL0145	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucsL0502	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucsL0503	Citrus inodora genome v1.0 (UQ)	Citrus inodora
cgacsL0145	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacsL0146	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacsL0271	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacsL0723	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacsL0724	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacsL0851	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgucsL0143	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucsL0144	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucsL0275	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucsL0710	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucsL0712	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucsL0839	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cscumR018	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
crccsL074	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
crccsL076	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cscstR021	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
cscstR022	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
crmcsL0076	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
crmcsL0217	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
crmcsL0218	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
crmcsL0850	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cricsL0213	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cricsL0657	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata

Orthologs


Gene/Transcript	Assembly	Species
NM_gene13350.t1	Citrus limon cv. Eureka genome v1.0	Citrus limon
Ciclev10016376m	Citrus clementina genome v1.0 (JGI)	Citrus clementina
evm.model.ctg78.60	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
huyou00008095-RA	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
CP2g000664.t1	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
LW209540.1	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
CL2G044611012.t1_alt	Citrus limon L. Burm f. genome v1.0 - Alternative	Citrus limon
Me_06575.1	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
hap2-g5580.t1	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
g23627.t1	Citrus australis genome v1.0 (UQ)	Citrus australis
JLX061740.1	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
g6503.t1_h2	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
NM_gene09292.t1	Citrus limon cv. Eureka genome v1.0	Citrus limon
HP080450.1	Clausena lansium cv. HP genome v1.0	Clausena lansium
hap1-g5413.t1	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
Cg2g041080.1	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
mi_v1.0.alternate_g5568.t1	Citrus inodora CRC3784 genome v1.0	Citrus inodora
g7166.t1	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
Abu2g_005710.1	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
hap1-g6277.t1	Citrus inodora genome v1.0 (UQ)	Citrus inodora
sjg045710.1	Fortunella hindsii genome v1.0	Fortunella hindsii
Chh221500.1	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
g6152.t1_h1	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
hap2-g5986.t1	Citrus inodora genome v1.0 (UQ)	Citrus inodora
Cau_v1.alternate_g5324.t1	Citrus australasica CRC3672 genome v1	Citrus australasica
mi_v1.0.primary_g5708.t1	Citrus inodora CRC3784 genome v1.0	Citrus inodora
g6036.t1	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
Egl132480.1	Citrus australasica cv. AZM genome v1.0	Citrus australasica
sjg284900.1	Fortunella hindsii genome v1.0	Fortunella hindsii
Cau_v1.primary_g5344.t1	Citrus australasica CRC3672 genome v1	Citrus australasica
Cms259970.1	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
SYT237340.1	Luvunga scandens cv. SYT genome v1.0	Luvunga scandens
Cmt164790.1	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
Fh2g31230.1	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
eg_v1.0.primary_g7010.t1	Citrus glauca CRC3463 genome v1	Citrus glauca
Ptrif.0002s3533.1.v1.3.1	Poncirus trifoliata genome v1.3.1 (JGI)	Poncirus trifoliata
Cic154880.1	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
Pt2g026770.1	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
Citropsis240960.1	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
hap2-g6276.t1	Citrus glauca genome v1.0 (UQ)	Citrus glauca
g7356.t1_h1	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
hap1-g5523.t1	Citrus glauca genome v1.0 (UQ)	Citrus glauca
XGF005160.1	Citrus maxima cv. XGF genome v1.0	Citrus maxima
gene-CUMW_010750-mRNA1	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
g6004.t1_h2	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
gene-KPL70_005010-mRNA1	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
Cs2g_pb004110.1	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
CsN02G005810.1	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
drCitSine.Jinhong.1.0.HB2g06670.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
EVM_prediction_chr9.1_tiancheng.2595	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
Cs_ont_2g006240.1	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
EVM_prediction_HIC_ASM_1.2513	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
EVM_prediction_chr9.2_youzi.2408	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
gene-KPL71_005607-mRNA1	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
Cs2g07050.1	Citrus sinensis Valencia genome v1.0 (HZAU)	Citrus sinensis
drCitSine.Jinhong.1.0.HA2g06500.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
Csi02G006390.1	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
orange1.1g025546m.g.v1.1	orange1.1g025546m.g.v1.1_Csinensis_154_v1.1	Citrus sinensis	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
orange1.1g025546m.v1.1	orange1.1g025546m.v1.1_Csinensis_154_v1.1-protein	Citrus sinensis	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
orange1.1g025546m.v1.1.exon.1	orange1.1g025546m.v1.1.exon.1_Csinensis_154_v1.1	Citrus sinensis	exon
orange1.1g025546m.v1.1.exon.2	orange1.1g025546m.v1.1.exon.2_Csinensis_154_v1.1	Citrus sinensis	exon
orange1.1g025546m.v1.1.exon.3	orange1.1g025546m.v1.1.exon.3_Csinensis_154_v1.1	Citrus sinensis	exon
orange1.1g025546m.v1.1.exon.4	orange1.1g025546m.v1.1.exon.4_Csinensis_154_v1.1	Citrus sinensis	exon
orange1.1g025546m.v1.1.exon.5	orange1.1g025546m.v1.1.exon.5_Csinensis_154_v1.1	Citrus sinensis	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
orange1.1g025546m.v1.1.five_prime_UTR.1	orange1.1g025546m.v1.1.five_prime_UTR.1_Csinensis_154_v1.1	Citrus sinensis	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
orange1.1g025546m.v1.1.CDS.1	orange1.1g025546m.v1.1.CDS.1_Csinensis_154_v1.1	Citrus sinensis	CDS
orange1.1g025546m.v1.1.CDS.2	orange1.1g025546m.v1.1.CDS.2_Csinensis_154_v1.1	Citrus sinensis	CDS
orange1.1g025546m.v1.1.CDS.3	orange1.1g025546m.v1.1.CDS.3_Csinensis_154_v1.1	Citrus sinensis	CDS
orange1.1g025546m.v1.1.CDS.4	orange1.1g025546m.v1.1.CDS.4_Csinensis_154_v1.1	Citrus sinensis	CDS
orange1.1g025546m.v1.1.CDS.5	orange1.1g025546m.v1.1.CDS.5_Csinensis_154_v1.1	Citrus sinensis	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
orange1.1g025546m.v1.1.three_prime_UTR.1	orange1.1g025546m.v1.1.three_prime_UTR.1_Csinensis_154_v1.1	Citrus sinensis	three_prime_UTR

Homology

[Close]

BLAST of orange1.1g025546m.v1.1 vs. DB:SwissProt
Match: PCR8_ARATH (Protein PLANT CADMIUM RESISTANCE 8 OS=Arabidopsis thaliana OX=3702 GN=PCR8 PE=1 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 7.424e-10
Identity = 44/163 (26.99%), Postives = 72/163 (44.17%), Query Frame = 1

Query:  121 GKWRTPEGDGADVNMDGGEFGAVLRMWEGEVLDCFDDRPIALQSACCPCYRFGKNMRRAGFGYCFVQGSAYFILAIGAIMNFIAFIVTRRHCFLYLAMAFFISIGGYLGF-LRTQMRKKFNILGSDSSMDDCIYHLVCPCCTLCQEARTLEMNNVQDGT-WHG 603
             ++  P    A+VN+  G      R W   + DC  D+  A+ +   PC  FG+                     I  +M+    +      F+YL M   +     +G   R +MR+KFN++  ++   DC  H++CPCC+LCQE R L++ N+     W+G
Sbjct:   33 SQFAPPNYQQANVNLSVG------RPWSTGLFDCQADQANAVLTTIVPCVTFGQ---------------------IAEVMDE-GEMTCPLGTFMYLLMMPALCSHWVMGSKYREKMRRKFNLV--EAPYSDCASHVLCPCCSLCQEYRELKIRNLDPSLGWNG 165

The following BLAST results are available for this feature:

BLAST of orange1.1g025546m.v1.1 vs. DB:SwissProt

BLAST of orange1.1g025546m.v1.1 vs. DB:SwissProt
Analysis Date: 2018-06-08 (C. sinensis v1.1 CDS)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
PCR8_ARATH	7.424e-10	26.99	Protein PLANT CADMIUM RESISTANCE 8 OS=Arabidopsis ...	[more]

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA from alignment at scaffold00010:1432388..1434734+
coding sequence from alignment at scaffold00010:1432388..1434734+

mRNA sequence

>orange1.1g025546m.v1.1_Csinensis_154_v1.1 ID=orange1.1g025546m.v1.1_Csinensis_154_v1.1; Name=orange1.1g025546m.v1.1; organism=Citrus sinensis; type=mRNA; length=2347bp
GAGAAAAGCACATTGAAACTTTTCCAAGAAATACATAAAATAACAGCAGG
CTCGTTTTCAATTAGCTGAAGCGGGTCGTTTGAAACCGCGAACGAAGGGA
GACGACGGCGTATTGATGGCGGAAACGGACAGGCAGCAAGAGAAGGCGGG
TGGTGAAGAGGAGGAGAGCTTGCTCGAAGGGATGGCGGTAGTAAATTTCG
ACGTCCTcTGTTCGACGGTGGCATTGCAAACTCAGGGGAAATGGAGGACA
CCGGAAGGTGACGGCGCGGACGTTAATATGGACGGAGGTGAGTTCGGCGC
CGTTTTGAGGATGTGGGAAGGTGAAGTCCTTGACTGTTTCGATGACCGTC
CCATCGCTCTCCAATCCGCCTGGTTAGTCTGTTGCTACTTTCTTTGGATA
TTTGCTTTTGTTTTCTCTAAATGaTTTTTTTCCCGAATTAATTAAACCCA
AGACAGTAATTAAAACAAAaTTTTCTTTTGTTTTAAGGCAAGTAGCTCGT
AGGTGGATTTTGTATTGAATAATTTTTGTAATTTGATGAATTTTTTTtAA
TAATTTATAGAAATATATTAATTAgggCGTGTTTGGTGTGCTTCTTTAGA
TATGGGGCTTCAGGAGTAAAATTAAAATCGCTTTCTACAAAGGCACCTGA
AATTGCTAATTTGAATATCATCTATTGACTGCTTCTACAGAAACCTAAAA
ACTTTTGGGCAAAAATCATTACGTGTATATTAGCAAAAAAAaTTTATTGT
GCTTATGAATAACGGTATGAATAACAGTGTCATTGGTGTTGCAGCTGTCC
ATGCTACCGGTTCGGGAAGAACATGAGACGGGCTGGTTTTGGTTATTGTT
TTGTTCAGGTAAATCTTGCAGCTTTTGGAGAATGCAAATATTATCGTCTT
TGATATATTTTTATACTTGTTCTCTAGCACTTAAGAGTTGCAGAATTTGA
TGTCATTGTTTATGAAGCTGATTTAGTCAGACCCTGAGTTTCTTATTGAA
ATTTTTCAGGGATCCGCTTATTTCATTCTGGCCATTGGTGCCATTATGAA
TTTCATTGCTTTCATCGTCACTAGGCGGCATTGCTTTTTGTATTTGGCTA
TGGCCTTCTTCATTTCTATAGGAGGGTACTTGGGATTTTTGCGAACGCAG
ATGAGAAAGAAATTTAATATTTTGGTGAGTTTGTCGTTGATGCTTCAACA
TTAGTATGTTGTGTGCACTAGTTTTGTACTTTTCCTCTTCTTTTCATTCA
GTTTTTTGTTCCATATTTTAATCATGTACTGGTTCATAATGAGTTTTACA
TATCAAAGGGATCTTGTAACCCAAAAGTTATTTTTGTTCCATATTATTGA
TGAGTTGAACCTTGCTAGAATTCTTATCTAATGACTAGTGCACTTTCTGA
ATCTTATGCCTTTTGATTAATAGTATTTGTTGCATTTGATATGTGTTGAA
ATCTCTCTTCTTGTTTTAATGGAAAAATTTGATGGTTTTCAGGGTAGTGA
TAGTTCTATGGATGACTGCATCTATCATCTTGTCTGCCCTTGCTGCACAT
TATGTCAGGTATATTTTGTGCCTTCCCTTATTCGCAGAAATCTAGTTTCT
TGTTTAAATGGTACTGCAAACTTTTAGAAGTGAGGATATGaCGTCATTTT
ATAGAATATGTAAATGCGACTTCAATGAAACTTGGCAAACAGTTCATATA
TCTGAAAATTGATCACGAGTATGcTTTAATTATGAGCAGGAAGCTAGAAC
TTTGGAGATGAACAATGTTCAAGATGGCACTTGGCATGGCAGGGGTGATA
CGATATGCATAGGGAGCTATAGTGAAGGGAATAGAGACTTCTTTAAGCTG
CACCAACCCCCCGTCTCAACGAAGTGGCCCGAACGCTGCATCATGCAAAA
GAGcAGaGATGTGGTGATCACCCTTGAGCCAGAGAAGCTGTGAATTTCAA
TAATTGCTCTGTTTATCCCTCCATGGCTGCTGCTGTGTGCAAAAGTACCG
ACTTCCCaTTTCTTTGCTGAGGGAGCAATATTGTACTGGCTCCATTGACT
GATGATTCaTGTCCAAGAGTTAGTAGCAGCCAACAAAGGGAAGAATATAG
CCTTGGCTGCCAGATTACCACCCTGCATTTGCAAATCCAGATGCTTACCT
GTTCAAACTCTTGATGGAGATATCTCAGGTCCTTGTACATAGTAGAAAAA
TGGTATTTATTAAGGTGGGgTTTTTTtAAccACCccTTTTCAACCTTTAC
CTGTAGTTGTTTGCCAAAAGTTTCAGCTACGCTCCATTCTTCCTGGTTGA
TTTGAAACTTAAATATGTGTTCCATTTTGGAACAAAGCTTAGTCTCC

mRNA from alignment at scaffold00010:1432388..1434734+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=2347bp; location=Sequence derived from: scaffold00010:1432388..1434734+ (Citrus sinensis
GAGAAAAGCACATTGAAACTTTTCCAAGAAATACATAAAATAACAGCAGG
CTCGTTTTCAATTAGCTGAAGCGGGTCGTTTGAAACCGCGAACGAAGGGA
GACGACGGCGTATTGATGGCGGAAACGGACAGGCAGCAAGAGAAGGCGGG
TGGTGAAGAGGAGGAGAGCTTGCTCGAAGGGATGGCGGTAGTAAATTTCG
ACGTCCTcTGTTCGACGGTGGCATTGCAAACTCAGGGGAAATGGAGGACA
CCGGAAGGTGACGGCGCGGACGTTAATATGGACGGAGGTGAGTTCGGCGC
CGTTTTGAGGATGTGGGAAGGTGAAGTCCTTGACTGTTTCGATGACCGTC
CCATCGCTCTCCAATCCGCCTGGTTAGTCTGTTGCTACTTTCTTTGGATA
TTTGCTTTTGTTTTCTCTAAATGaTTTTTTTCCCGAATTAATTAAACCCA
AGACAGTAATTAAAACAAAaTTTTCTTTTGTTTTAAGGCAAGTAGCTCGT
AGGTGGATTTTGTATTGAATAATTTTTGTAATTTGATGAATTTTTTTtAA
TAATTTATAGAAATATATTAATTAgggCGTGTTTGGTGTGCTTCTTTAGA
TATGGGGCTTCAGGAGTAAAATTAAAATCGCTTTCTACAAAGGCACCTGA
AATTGCTAATTTGAATATCATCTATTGACTGCTTCTACAGAAACCTAAAA
ACTTTTGGGCAAAAATCATTACGTGTATATTAGCAAAAAAAaTTTATTGT
GCTTATGAATAACGGTATGAATAACAGTGTCATTGGTGTTGCAGCTGTCC
ATGCTACCGGTTCGGGAAGAACATGAGACGGGCTGGTTTTGGTTATTGTT
TTGTTCAGGTAAATCTTGCAGCTTTTGGAGAATGCAAATATTATCGTCTT
TGATATATTTTTATACTTGTTCTCTAGCACTTAAGAGTTGCAGAATTTGA
TGTCATTGTTTATGAAGCTGATTTAGTCAGACCCTGAGTTTCTTATTGAA
ATTTTTCAGGGATCCGCTTATTTCATTCTGGCCATTGGTGCCATTATGAA
TTTCATTGCTTTCATCGTCACTAGGCGGCATTGCTTTTTGTATTTGGCTA
TGGCCTTCTTCATTTCTATAGGAGGGTACTTGGGATTTTTGCGAACGCAG
ATGAGAAAGAAATTTAATATTTTGGTGAGTTTGTCGTTGATGCTTCAACA
TTAGTATGTTGTGTGCACTAGTTTTGTACTTTTCCTCTTCTTTTCATTCA
GTTTTTTGTTCCATATTTTAATCATGTACTGGTTCATAATGAGTTTTACA
TATCAAAGGGATCTTGTAACCCAAAAGTTATTTTTGTTCCATATTATTGA
TGAGTTGAACCTTGCTAGAATTCTTATCTAATGACTAGTGCACTTTCTGA
ATCTTATGCCTTTTGATTAATAGTATTTGTTGCATTTGATATGTGTTGAA
ATCTCTCTTCTTGTTTTAATGGAAAAATTTGATGGTTTTCAGGGTAGTGA
TAGTTCTATGGATGACTGCATCTATCATCTTGTCTGCCCTTGCTGCACAT
TATGTCAGGTATATTTTGTGCCTTCCCTTATTCGCAGAAATCTAGTTTCT
TGTTTAAATGGTACTGCAAACTTTTAGAAGTGAGGATATGaCGTCATTTT
ATAGAATATGTAAATGCGACTTCAATGAAACTTGGCAAACAGTTCATATA
TCTGAAAATTGATCACGAGTATGcTTTAATTATGAGCAGGAAGCTAGAAC
TTTGGAGATGAACAATGTTCAAGATGGCACTTGGCATGGCAGGGGTGATA
CGATATGCATAGGGAGCTATAGTGAAGGGAATAGAGACTTCTTTAAGCTG
CACCAACCCCCCGTCTCAACGAAGTGGCCCGAACGCTGCATCATGCAAAA
GAGcAGaGATGTGGTGATCACCCTTGAGCCAGAGAAGCTGTGAATTTCAA
TAATTGCTCTGTTTATCCCTCCATGGCTGCTGCTGTGTGCAAAAGTACCG
ACTTCCCaTTTCTTTGCTGAGGGAGCAATATTGTACTGGCTCCATTGACT
GATGATTCaTGTCCAAGAGTTAGTAGCAGCCAACAAAGGGAAGAATATAG
CCTTGGCTGCCAGATTACCACCCTGCATTTGCAAATCCAGATGCTTACCT
GTTCAAACTCTTGATGGAGATATCTCAGGTCCTTGTACATAGTAGAAAAA
TGGTATTTATTAAGGTGGGgTTTTTTtAAccACCccTTTTCAACCTTTAC
CTGTAGTTGTTTGCCAAAAGTTTCAGCTACGCTCCATTCTTCCTGGTTGA
TTTGAAACTTAAATATGTGTTCCATTTTGGAACAAAGCTTAGTCTCC

Coding sequence (CDS) from alignment at scaffold00010:1432388..1434734+

>orange1.1g025546m.v1.1_Csinensis_154_v1.1 ID=orange1.1g025546m.v1.1_Csinensis_154_v1.1; Name=orange1.1g025546m.v1.1; organism=Citrus sinensis; type=CDS; length=756bp; location=Sequence derived from: scaffold00010:1432388..1434734+ (Citrus sinensis
ATGGCGGAAACGGACAGGCAGCAAGAGAAGGCGGGTGGTGAAGAGGAGGA
GAGCTTGCTCGAAGGGATGGCGGTAGTAAATTTCGACGTCCTcTGTTCGA
CGGTGGCATTGCAAACTCAGGGGAAATGGAGGACACCGGAAGGTGACGGC
GCGGACGTTAATATGGACGGAGGTGAGTTCGGCGCCGTTTTGAGGATGTG
GGAAGGTGAAGTCCTTGACTGTTTCGATGACCGTCCCATCGCTCTCCAAT
CCGCCTGCTGTCCATGCTACCGGTTCGGGAAGAACATGAGACGGGCTGGT
TTTGGTTATTGTTTTGTTCAGGGATCCGCTTATTTCATTCTGGCCATTGG
TGCCATTATGAATTTCATTGCTTTCATCGTCACTAGGCGGCATTGCTTTT
TGTATTTGGCTATGGCCTTCTTCATTTCTATAGGAGGGTACTTGGGATTT
TTGCGAACGCAGATGAGAAAGAAATTTAATATTTTGGGTAGTGATAGTTC
TATGGATGACTGCATCTATCATCTTGTCTGCCCTTGCTGCACATTATGTC
AGGAAGCTAGAACTTTGGAGATGAACAATGTTCAAGATGGCACTTGGCAT
GGCAGGGGTGATACGATATGCATAGGGAGCTATAGTGAAGGGAATAGAGA
CTTCTTTAAGCTGCACCAACCCCCCGTCTCAACGAAGTGGCCCGAACGCT
GCATCATGCAAAAGAGcAGaGATGTGGTGATCACCCTTGAGCCAGAGAAG
CTGTGA