Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
orange1.1g026705m.v1.1 orange1.1g026705m.v1.1_Csinensis_154_v1.1-protein Citrus sinensis polypeptide
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
orange1.1g026705m.v1.1.CDS.5 orange1.1g026705m.v1.1.CDS.5_Csinensis_154_v1.1 Citrus sinensis CDS orange1.1g026705m.v1.1.CDS.4 orange1.1g026705m.v1.1.CDS.4_Csinensis_154_v1.1 Citrus sinensis CDS orange1.1g026705m.v1.1.CDS.3 orange1.1g026705m.v1.1.CDS.3_Csinensis_154_v1.1 Citrus sinensis CDS orange1.1g026705m.v1.1.CDS.2 orange1.1g026705m.v1.1.CDS.2_Csinensis_154_v1.1 Citrus sinensis CDS orange1.1g026705m.v1.1.CDS.1 orange1.1g026705m.v1.1.CDS.1_Csinensis_154_v1.1 Citrus sinensis CDS
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
orange1.1g026705m.v1.1.three_prime_UTR.1 orange1.1g026705m.v1.1.three_prime_UTR.1_Csinensis_154_v1.1 Citrus sinensis three_prime_UTR
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
orange1.1g026705m.v1.1.exon.5 orange1.1g026705m.v1.1.exon.5_Csinensis_154_v1.1 Citrus sinensis exon orange1.1g026705m.v1.1.exon.4 orange1.1g026705m.v1.1.exon.4_Csinensis_154_v1.1 Citrus sinensis exon orange1.1g026705m.v1.1.exon.3 orange1.1g026705m.v1.1.exon.3_Csinensis_154_v1.1 Citrus sinensis exon orange1.1g026705m.v1.1.exon.2 orange1.1g026705m.v1.1.exon.2_Csinensis_154_v1.1 Citrus sinensis exon orange1.1g026705m.v1.1.exon.1 orange1.1g026705m.v1.1.exon.1_Csinensis_154_v1.1 Citrus sinensis exon
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
orange1.1g026705m.v1.1.five_prime_UTR.1 orange1.1g026705m.v1.1.five_prime_UTR.1_Csinensis_154_v1.1 Citrus sinensis five_prime_UTR
Homology
BLAST of orange1.1g026705m.v1.1 vs. DB:SwissProt
Match:
TET19_ARATH (Tetraspanin-19 OS=Arabidopsis thaliana OX=3702 GN=TOM2AH3 PE=2 SV=1)
HSP 1 Score: 190.66 bits (483), Expect = 1.271e-59
Identity = 102/220 (46.36%), Postives = 138/220 (62.73%), Query Frame = 1
Query: 1 MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCXXXXXETAIAADIQLNSEWEKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSXXXXXXXXXXGSNQGYSYDNDGEFLSDRLPLINHQVQAPAYVIGDPPFAAKYDPVKPTAYAWNVKI 660
M RI +CLQS LK +N ++G+VGI+MILY +W+IR WQ M F D PWFI SF+G+G C++TC GHIAA + NG CL YM LL ++E + ADI LN +W+KD P+DP+G FH F KF++SNF I KWIG+ I+ Q S L+AM L+ALG + YD+D E+ + L+ Q P YV+G+P + AK AW V++
Sbjct: 1 MVRIVRSCLQSMLKLVNSLIGMVGIAMILYAVWLIRQWQEQMGNLPFADSDHPVPWFIYSFLGLGAILCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMVEGGVVADIFLNRDWKKDFPEDPSGAFHQFSKFIESNFKICKWIGLSIVCVQGLSVLIAMLLKALGPHPHRHYDSDDEYNVSTVALLQDARQPPPYVVGEPMYGAKPG-------AWTVRL 213
BLAST of orange1.1g026705m.v1.1 vs. DB:SwissProt
Match:
TET18_ARATH (Tetraspanin-18 OS=Arabidopsis thaliana OX=3702 GN=TOM2AH2 PE=1 SV=1)
HSP 1 Score: 106.301 bits (264), Expect = 1.859e-26
Identity = 62/183 (33.88%), Postives = 90/183 (49.18%), Query Frame = 1
Query: 31 SFLKALNLIMGIVGISMILYGIWMIRVWQRDME-----------------------GQSFDDFCSI-------------------NPWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCXXXXXETAIAADIQLNSEWEKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQ 453
S LK LN + +G+S+I+Y IWM+ + R + D SI PWFI SF+ +G+ C++T +G IAA + NG CL FY ++ LL+LLE A+ A I ++ WEKDLP DPTG + F++ N DI KW+GI +++ Q
Sbjct: 12 STLKILNFVQAFIGVSIIIYSIWMLHEYSRHLPVDPPPSASSSSGTEIATSVSEPLKNPIDFVASIILGSNGGDHGFNLRSLDLPAPWFIYSFMAVGILVCIVTFIGFIAAEAINGCCLCFYSILKTLLILLEAALVAYIAIDRHWEKDLPYDPTGELSSLRAFIEENIDICKWVGIAVVAVQ 194
BLAST of orange1.1g026705m.v1.1 vs. DB:SwissProt
Match:
TET20_ARATH (Tetraspanin-20 OS=Arabidopsis thaliana OX=3702 GN=TOM2AH1 PE=1 SV=1)
HSP 1 Score: 95.1301 bits (235), Expect = 4.302e-22
Identity = 53/124 (42.74%), Postives = 82/124 (66.13%), Query Frame = 1
Query: 163 PWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCXXXXXETAIAADIQLNSEWEKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSXXXXXXXXXXGSNQGYSYDNDGEF 534
PWFI F+ IG+ C++T +G IAA + NG CL FY ++ LL+++E A+ I ++ WEKDLP DPTG + + F++ N DI KW+GI +++ Q+ S LLA+ LRA+ S + D++ +F
Sbjct: 109 PWFIYCFMAIGILVCIVTIIGFIAAEAINGCCLCFYSILKTLLIIIEAALVGFIVIDRHWEKDLPYDPTGELNSLRAFIEENIDICKWVGIVVVAIQLLSLLLALVLRAMVSPRQSELDDEDDF 232
BLAST of orange1.1g026705m.v1.1 vs. DB:SwissProt
Match:
TOM2A_ARATH (Tobamovirus multiplication protein 2A OS=Arabidopsis thaliana OX=3702 GN=TOM2A PE=1 SV=1)
HSP 1 Score: 76.2554 bits (186), Expect = 3.039e-15
Identity = 76/260 (29.23%), Postives = 117/260 (45.00%), Query Frame = 1
Query: 22 CLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEG----------QSFDDF---------CSIN-------PWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCXXXXXETAIAADIQLNSEWEKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSXXXXXXXXXXGSNQGYSYDNDGEFLSD----RLPLINHQVQAPAYVIGDPPFAAKYDPVKPTAYAWNVKIH-----------FNPSQ 678
CL+ LK LN ++ + G+ MI YGI++ ++R + QS+ F S N WFI FIGIGV +I+C G + S + CLS Y L+ LL+L+E AA I ++ W +LP D TG F F++ N+ I +W+ + + + +AL +N YD+D E+L+ R P IN Q AP + P A D + W+ ++ +NPS+
Sbjct: 6 CLECLLKLLNFLLAVAGLGMIGYGIYLFVEYKRVTDNSVTFDLTNGDQSYVSFGRPILMAVSLSSNIFDNLPKAWFIYLFIGIGVALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVELGFAAFIFFDNSWRDELPSDRTGNFDTIYNFLRENWKIVRWVALGAVVFEALL--FLLALMVRAANTPAEYDSDDEYLAPRQQIRQPFINRQA-APVTGV---PVAPTLDQRPSRSDPWSARMREKYGLDTSEFTYNPSE 259
The following BLAST results are available for this feature:
BLAST of orange1.1g026705m.v1.1 vs. DB:SwissProt
Analysis Date: 2018-06-08 (
C. sinensis v1.1 CDS )
Total hits: 4
500 1000 1500 2000 2500 3000 Expect = 1.27e-59 / Id = 46.36 Expect = 1.86e-26 / Id = 33.88 Expect = 4.30e-22 / Id = 42.74 Expect = 3.04e-15 / Id = 29.23 Sequence TET19_ARATH TET18_ARATH TET20_ARATH TOM2A_ARATH
Match Name E-value Identity Description
TET19_ARATH 1.271e-59 46.36 Tetraspanin-19 OS=Arabidopsis thaliana OX=3702 GN=... [more] TET18_ARATH 1.859e-26 33.88 Tetraspanin-18 OS=Arabidopsis thaliana OX=3702 GN=... [more] TET20_ARATH 4.302e-22 42.74 Tetraspanin-20 OS=Arabidopsis thaliana OX=3702 GN=... [more] TOM2A_ARATH 3.039e-15 29.23 Tobamovirus multiplication protein 2A OS=Arabidops... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>orange1.1g026705m.v1.1_Csinensis_154_v1.1 ID=orange1.1g026705m.v1.1_Csinensis_154_v1.1; Name=orange1.1g026705m.v1.1; organism=Citrus sinensis; type=mRNA; length=3340bp back to top mRNA from alignment at scaffold00010:2060857..2064196-
Legend: five_prime_UTR exon polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=3340bp; location=Sequence derived from: scaffold00010:2060857..2064196- (Citrus sinensisATAACATTTACACTGTGTATGTATCCATAGTAATCCTAAGCATGTTTACG
TGAAGTTGGTCGTTTTCGAATTTTGCTTACACCTAAAGATACAGGGAAGT
TGTAAATA ATGGAAAGAATAGCAATAACTTGCCTGCAGTCATTCCTAAAA
GCTTTGAATTTGATCATGGGAATTGTTGGTATATCTATGATCCTATATGG
GATTTGGATGATCAGAGTTTGGCAGAGAGACATGGAAGGGCAATCATTTG
ATGATTTTTGTTCAATAAATCCATG GTTTATATGCAGTTTCATTGGCATTGGTGTGACCTTTTGTCTT
ATAACATGCCTGGGTCATATTGCCGCCGCTAGTGCTAATGGCTTTTGCCT
ATCTTTC TATATGCTGATTACCTGTTTGCTTCTTCTGTTGGAGACTGCAATA
GCTGCCGATATTCAGCTAAACTCTGAATGGGAGAAG GATTTACCTGATGACCCAA
CAGGGAGGTTCCATGATTTCAAGAAATTTGTGAAATCGAACTTTGATATC
TTCAAATGGATAGGCATTTGGATCATCTCGGCACAG GTTTCTTCTGCTTTATTGGCAA
TGGCTTTAAGAGCTCTTGGGTCAAACCAAGGCTACAGCTACGACAATGAT
GGTGAATTCCTTTCAGACAGGCTTCCACTTATAAATCACCAAGTTCAAGC
ACCGGCGTATGTCATCGGAGATCCACCCTTTGCCGCAAAATATGACCCTG
TCAAACCGACTGCATATGCATGGAATGTAAAGATCCATTTCAACCCTTCC
CAGCTTTTTCTTGCATCTTTCTTGAGTTGA TTCTCATACTTAGCTTTTGA
CTTCTCTGTACGTTTGCAGACGAACAAGTGACGAGAGACGAGTGTACGCC
ATCATAGCCACATATTGACAATCAGTTGATTTCAGCGGGAGGATAAAACC
TAAAGCATACTATTAGTCATAGCGTTCTTATGTTTCTTTTGTGATTTTGT
GCAATCACGCTTAATGCCTGAGATGTTTAGATTGTTCTTAAGAATTGTTT
ATTCCAATAAGATCGAAAGTATCTTTCGGAACCCTGATATGAAAGAAGAA
AGATGCAGATAAACACTGCCTGCCATCATGGAAACTCAAAATGTATACTA
CTAAGGCTAAATCACATAATTTTCTTCACAAAGTCTTAACTTTAAGAGAT
GATTTGTATGCCAAATACTAAGAAATCTCAAGAATCAGAAATCGTGAAGA
TCGTCTTCACAATACAAACGGCAACACGAAGCCAAAATTCTGCTACATAA
CATATAGAAAGAACAGTTTAAAAGTAATGAAAACTGACTCATCCCTTCAG
TAAACTAGAGTACGTAATTTCTAATTCCTCAAAGAATGTTACATATAATA
GAAACCAAAAAATAAAAATGATAATTACTGTGGCAACTCATTTTGAACTA
AAGGTTGGAGGAGAAGGAATTGAACCAAAAAGTAGAGATGGGAGCACCTA
TTCGGATTTCTTTGTTGCAGAAGGCTTTCTCTTCATTCGGCTAAAGGGGC
CGACTGTCCTATCCATAATATACATATATATAACCTGGCTCCAAGATTTA
TAAGATGCTAAACCCTGATAATACTCAGGTGCAACCTCCCTGACCTTGTG
GAGCTTGTTTCCAGGAATTCTTGGGAAATCATGGTGCTCATTGTGGTATC
CCACATGCCACGTTAGAAAATTGAGGGGGCCATAGTAAGAATATGTCTCC
TGGTCAGGGTTGAAGACATAATGTTCTGAAATGAAGTGACCAGCCATGGG
GTGCATCCCACCCCCAACAAATGTGGAAAGGATCAAATAAGCAAAAGATT
TCCATCCCCAAAAGTAAACAATGGTTATGTCAAGAGCTATCTGAATAGAG
AAGTTAATGAACTCCCAATAACCAGGTGGCTTCGGTTTGAGAAATACAGG
TCGGAAAGCATAGAAGAGGAGTTGGAAGATGACCCATATGGATTTTGCAA
CAACATTTGTGACCATTCGGGTTTCAGTTAGGCTTGGTATGTCCATGTCA
ATACCATCTACTCCTTGAAAGCGATGGTGCTCAAGGTGATACTTCTGGAA
AGTGACAGACATGGGCACACCAACAGGAAGGTTAGCAAGAATACCAAGCC
AACGGTTGTAGGCTGGAGTGGAGAAGGCGAGATTGTGGCTGAGCTCATGA
ATGGCCAAGAAGAGATTGTGGTTGAGAAAAGAGCCAAAGAAGTAGGCTGT
TGCCAGTATCTTCAGCCAGCCTGCATCGTGAAGTAAAGTAGCAGTGTAAA
GCTGAAGAAGAACAACCACAGTAACCTGCAGATCCACAATACTGAGGACG
TGAATATAAATCTAAACCAACTACATCTGGTAATATTGTTTAAATTTCCC
AACAATTCTACGGCAGAAAGATCACCAGCAAACCATATAGCGGCAAAATA
TTTGTGCATGCCTACATATTCAATGCTCAGGATATGAAAGTGGAGCCAAA
AAAATCAACGTTCAGGAACAACCAAAATACAAGGTCAAAACAACACCAGG
TTGACACCAATACGCAAACTTGCATAAAAGTGACAAAGAATTACTTAATA
CACCAATTCTGTTTAACCAATCACAAGAGTCTTCGTTTAAAGACAAACAT
GAATAAATCAGAATACTTATGGTTCAACCCCAATTCTTAATTTCAAAATG
CAGCAAAACTGAAAATGTCTGAAGGAAGCTAGCTGCCTTTAGAGAATTCA
TATTAGAAAGCCAAATTATGATCAATGTGATGCATACAACGACCCAAAAA
AGGTTACCCAGAGACACATTAACCGAAAAGGCAATAATGCAACAATTAGA
AAACAACACCACAAGAAGAAATAAGTAAACATCAATCCAG back to top Coding sequence (CDS) from alignment at scaffold00010:2060857..2064196-
>orange1.1g026705m.v1.1_Csinensis_154_v1.1 ID=orange1.1g026705m.v1.1_Csinensis_154_v1.1; Name=orange1.1g026705m.v1.1; organism=Citrus sinensis; type=CDS; length=705bp; location=Sequence derived from: scaffold00010:2060857..2064196- (Citrus sinensis back to top
