orange1.1g029717m.v1.1, orange1.1g029717m.v1.1_Csinensis_154_v1.1 (mRNA) Citrus sinensis
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of orange1.1g029717m.v1.1 vs. DB:SwissProt
Match: FB316_ARATH (F-box protein At1g61340 OS=Arabidopsis thaliana OX=3702 GN=At1g61340 PE=2 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 3.134e-43 Identity = 90/186 (48.39%), Postives = 115/186 (61.83%), Query Frame = 1 Query: 1 MALGQ-----NCSSLKSRRGVASTGEGLGLGFVRYTRGLGRKRILIANGEETXXXXXXXXXXXLKRQCSEKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREATLIAKQWHFAYNTPRKTRVFKTS-IDYEDPI----ENAEVEAPNAPRQMRAYKSRLTSQK-LADISVALF 525
MALG+ +L+ RR V + G GLGL FV+Y RG GRKRILI++G+E + K+ C +K + LE LP DIL+RI+CGV HEDLKQLFHVS+ IREAT+IAKQ HFAY+TPRKT VF ++ P ++ E+EAP AP Q R SR+ K + +SVALF
Sbjct: 1 MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEFVQYKRGFGRKRILISSGDEMEDSIFTSPVG--KKLCDDKTTSVAEGQSRELEDLPLDILVRIICGVEHEDLKQLFHVSKTIREATMIAKQSHFAYSTPRKTSVFHHGRFGWDKPFDVEDDDEEIEAPGAPLQKRYRLSRINRNKDDSGVSVALF 184
BLAST of orange1.1g029717m.v1.1 vs. DB:SwissProt
Match: SKI27_ARATH (F-box protein SKIP27 OS=Arabidopsis thaliana OX=3702 GN=SKIP27 PE=1 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 5.269e-38 Identity = 81/164 (49.39%), Postives = 106/164 (64.63%), Query Frame = 1 Query: 82 VRYTRGLGRKRILIANG----------EETXXXXXXXXXXXLKRQCSE-KMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREATLIAKQWHFAYNTPRKTRVFKTSIDYEDPIEN----AEVEAPNAPRQMRAYKSRLTSQKLADISVALFA 528
VR+TRGLGRKRILI++ E +S SSLKRQ S ++ + EKSRLE LPQD+LIR++CGV+HEDLK L VS+ IREA+L+AK HFAY TP+KTR F+ SID E+ ++ ++E PNAPR R K++ Q L+ +S ALF
Sbjct: 63 VRFTRGLGRKRILISSCVRESLSRSAVEIPVVSESPPVKSSLKRQRSRITIVSSSSSEKSRLECLPQDLLIRVICGVDHEDLKSLKLVSKSIREASLVAKTLHFAYTTPKKTRAFRNSIDLEEVSDSRHQEDDIEPPNAPRHYRWTKAKRKEQ-LSSVSAALFT 225
BLAST of orange1.1g029717m.v1.1 vs. DB:SwissProt
Match: FB220_ARATH (F-box protein At4g05010 OS=Arabidopsis thaliana OX=3702 GN=At4g05010 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 3.985e-26 Identity = 70/160 (43.75%), Postives = 91/160 (56.88%), Query Frame = 1 Query: 61 EGLGLGFVRYTRGLGRKRILIANGEETXXXXXXXXXXXLKRQCSEKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREATLIAKQWHFAYNTPRKTRVFKTSIDYED-----PIENAEVEAPNAPRQMRAYKSRLTSQKLADISVALF 525
E LGLGFVR+TRGLGRKRILI+ S +KR E +C +S LE L QDILIR+LC V+HEDL L VS+ IR+A + AK+ HF Y+TP+K F+ +I D ++ E+E PNAP + R L+ IS+ LF
Sbjct: 17 ERLGLGFVRFTRGLGRKRILISK------RAPENDSPPVKRPSHETT--ESC--RSLLETLHQDILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKRLPFRDAILILDSNSNSSSQDDEMEPPNAPIRRRFINR---ESDLSKISMVLF 163
BLAST of orange1.1g029717m.v1.1 vs. DB:SwissProt
Match: FB248_ARATH (F-box protein At4g35930 OS=Arabidopsis thaliana OX=3702 GN=At4g35930 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.839e-15 Identity = 39/117 (33.33%), Postives = 63/117 (53.85%), Query Frame = 1 Query: 214 CDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREATLIAKQWHFAYNTPRKTRVFKTSIDYEDPIEN-------------AEVEAPNAPRQMRAYKSRLTSQKLADISVALF 525
C +S+LE+LP D+L++I+C ++H+ LK +FHVS+ IR AT++A+Q+HF Y TP ++R + PI + P AP+ SR ++ I+ LF
Sbjct: 156 CVSESQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIRMATILARQYHFNYTTPDRSRQEMLRVMTPVPINRWPFRRGDGNPTMVSSPHTPKAPKHAPRPPSRTKLAEMKQITAVLF 272 The following BLAST results are available for this feature:
BLAST of orange1.1g029717m.v1.1 vs. DB:SwissProt
Analysis Date: 2018-06-08 (C. sinensis v1.1 CDS) Total hits: 4 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >orange1.1g029717m.v1.1_Csinensis_154_v1.1 ID=orange1.1g029717m.v1.1_Csinensis_154_v1.1; Name=orange1.1g029717m.v1.1; organism=Citrus sinensis; type=mRNA; length=1565bpback to top mRNA from alignment at scaffold00010:1609130..1610694- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1565bp; location=Sequence derived from: scaffold00010:1609130..1610694- (Citrus sinensisback to top Coding sequence (CDS) from alignment at scaffold00010:1609130..1610694- >orange1.1g029717m.v1.1_Csinensis_154_v1.1 ID=orange1.1g029717m.v1.1_Csinensis_154_v1.1; Name=orange1.1g029717m.v1.1; organism=Citrus sinensis; type=CDS; length=570bp; location=Sequence derived from: scaffold00010:1609130..1610694- (Citrus sinensisback to top |