Transcript Overview
Name | orange1.1g035034m.v1.1 |
Unique Name | orange1.1g035034m.v1.1_Csinensis_154_v1.1 |
Type | mRNA |
Organism | Citrus sinensis (Sweet orange) |
Sequence length | 816 |
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
orange1.1g035034m.v1.1 | orange1.1g035034m.v1.1_Csinensis_154_v1.1-protein | Citrus sinensis | polypeptide |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
orange1.1g035034m.v1.1.exon.1 | orange1.1g035034m.v1.1.exon.1_Csinensis_154_v1.1 | Citrus sinensis | exon |
orange1.1g035034m.v1.1.exon.2 | orange1.1g035034m.v1.1.exon.2_Csinensis_154_v1.1 | Citrus sinensis | exon |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
orange1.1g035034m.v1.1.five_prime_UTR.1 | orange1.1g035034m.v1.1.five_prime_UTR.1_Csinensis_154_v1.1 | Citrus sinensis | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
orange1.1g035034m.v1.1.CDS.1 | orange1.1g035034m.v1.1.CDS.1_Csinensis_154_v1.1 | Citrus sinensis | CDS |
orange1.1g035034m.v1.1.CDS.2 | orange1.1g035034m.v1.1.CDS.2_Csinensis_154_v1.1 | Citrus sinensis | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
orange1.1g035034m.v1.1.three_prime_UTR.1 | orange1.1g035034m.v1.1.three_prime_UTR.1_Csinensis_154_v1.1 | Citrus sinensis | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
BLAST of orange1.1g035034m.v1.1 vs. DB:SwissProt
Analysis Date: 2018-06-08 ( C. sinensis v1.1 CDS)
Total hits: 0
Match Name | E-value | Identity | Description | |
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Sequences
The
following sequences are available for this feature:
mRNA sequence >orange1.1g035034m.v1.1_Csinensis_154_v1.1 ID=orange1.1g035034m.v1.1_Csinensis_154_v1.1; Name=orange1.1g035034m.v1.1; organism=Citrus sinensis; type=mRNA; length=816bp GAGAAAGAAAAAaGAAAAGAAGAAAGGGATGAGGGGTACAAGTAAAGATC TTTTGCACTTAGAGCAtAAGGATTCTTCGGCTTCAGCTATAGGTACACGT TTGTACTCTCTTTTCCTATATATGTGTATCCTGCAAGCTCTGTTGTTCAA CAGTTGTGTTTATATTTACAGAATCTGCACTTCTTGTTTGTAGCAAGAAA GACAAGAACGGTGAGTTAAAAAAACCAAACCCTaGTAAAATGCCCAGCTA TGGACCAGTTCCTAGAAGCCAaGGTATTCTGAATTTCTATGTGTTCTGGA AGTACTCTCCCTTCAAAATACTGGCTTCTGGTTGATAATTTGTCATGGGT GTTGCTTCTCTGTGAAATTGGTTCATGTGCACTCTGTTTCCATAGTTAGA TTATTGCAAAGATCTTGTTTGAGTGATGAATTATGAAATTCTCAAAGGAG AAAGAAATTTTAAAATTATTGTTCTGTAAATTGTTGTATTAAAGAGTTTC AAAAACCCTTATTAGAGATTTTTTTTTtGTTTCTAAAGTTGTTTCTGGAA CTTGGAATATCTTTATCAAAGTTGTTTCCAGAGCTTGtAATATCTTTATC AAGTTTATGTCAAGGAATTTTCTCAGGTATGTAGAGTCATATACATTTTG TAGGTATTTCATAGTGTCCGAAAATATGTTCTCTCATTTTTCAGTTTTAG GAAAAGTTAAAGGTTTTTTGGGAGTCATATtAGATGTTAATAAAAGGCTC CAACTTGATGCAAAGGCTTGTCAGCTGATTTTATTACTAAATATATACAA TTTATCTTGATCCACA back to topmRNA from alignment at scaffold00010:2281051..2281866+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. > ID=; Name=; organism= ; type=; length=816bp; location=Sequence derived from: scaffold00010:2281051..2281866+ (Citrus sinensis GAGAAAGAAAAAaGAAAAGAAGAAAGGGATGAGGGGTACAAGTAAAGATC
TTTTGCACTTAGAGCAtAAGGATTCTTCGGCTTCAGCTATAGGTACACGT
TTGTACTCTCTTTTCCTATATATGTGTATCCTGCAAGCTCTGTTGTTCAA
CAGTTGTGTTTATATTTACAGAATCTGCACTTCTTGTTTGTAGCAAGAAA
GACAAGAACGGTGAGTTAAAAAAACCAAACCCTaGTAAAATGCCCAGCTA
TGGACCAGTTCCTAGAAGCCAaGGTATTCTGAATTTCTATGTGTTCTGGA
AGTACTCTCCCTTCAAAATACTGGCTTCTGGTTGATAATTTGTCATGGGT
GTTGCTTCTCTGTGAAATTGGTTCATGTGCACTCTGTTTCCATAGTTAGA
TTATTGCAAAGATCTTGTTTGAGTGATGAATTATGAAATTCTCAAAGGAG
AAAGAAATTTTAAAATTATTGTTCTGTAAATTGTTGTATTAAAGAGTTTC
AAAAACCCTTATTAGAGATTTTTTTTTtGTTTCTAAAGTTGTTTCTGGAA
CTTGGAATATCTTTATCAAAGTTGTTTCCAGAGCTTGtAATATCTTTATC
AAGTTTATGTCAAGGAATTTTCTCAGGTATGTAGAGTCATATACATTTTG
TAGGTATTTCATAGTGTCCGAAAATATGTTCTCTCATTTTTCAGTTTTAG
GAAAAGTTAAAGGTTTTTTGGGAGTCATATtAGATGTTAATAAAAGGCTC
CAACTTGATGCAAAGGCTTGTCAGCTGATTTTATTACTAAATATATACAA
TTTATCTTGATCCACA back to topCoding sequence (CDS) from alignment at scaffold00010:2281051..2281866+ >orange1.1g035034m.v1.1_Csinensis_154_v1.1 ID=orange1.1g035034m.v1.1_Csinensis_154_v1.1; Name=orange1.1g035034m.v1.1; organism=Citrus sinensis; type=CDS; length=228bp; location=Sequence derived from: scaffold00010:2281051..2281866+ (Citrus sinensis ATGAGGGGTACAAGTAAAGATCTTTTGCACTTAGAGCAtAAGGATTCTTC GGCTTCAGCTATAGAATCTGCACTTCTTGTTTGTAGCAAGAAAGACAAGA ACGGTGAGTTAAAAAAACCAAACCCTaGTAAAATGCCCAGCTATGGACCA GTTCCTAGAAGCCAaGGTATTCTGAATTTCTATGTGTTCTGGAAGTACTC TCCCTTCAAAATACTGGCTTCTGGTTGA back to top
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