orange1.1g039181m.v1.1, orange1.1g039181m.v1.1_Csinensis_154_v1.1 (mRNA) Citrus sinensis

Transcript Overview


Name	orange1.1g039181m.v1.1
Unique Name	orange1.1g039181m.v1.1_Csinensis_154_v1.1
Type	mRNA
Organism	Citrus sinensis (Sweet orange)
Sequence length	2331

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus sinensis genome v1.1 (JGI)	2014-07-01
C. sinensis v1.1 CDS	2018-06-08

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cccsL000	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cccsL470	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cmcsL098	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
csfhR052	Fortunella hindsii genome v1.0	Fortunella hindsii
csfhR053	Fortunella hindsii genome v1.0	Fortunella hindsii
csfhR066	Fortunella hindsii genome v1.0	Fortunella hindsii
csptR020	Poncirus trifoliata genome v1.3.1 (JGI)	Poncirus trifoliata
csptR023	Poncirus trifoliata genome v1.3.1 (JGI)	Poncirus trifoliata
clpcsL079	Citrus limon L. Burm f. genome v1.0 - Primary	Citrus limon
clacsL082	Citrus limon L. Burm f. genome v1.0 - Alternative	Citrus limon
cscsiR020	Citrus sinensis Valencia genome v1.0 (HZAU)	Citrus sinensis
caucsL071	Citrus australis genome v1.0 (UQ)	Citrus australis
caucsL198	Citrus australis genome v1.0 (UQ)	Citrus australis
clecsL0802	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecsL0871	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecsL1057	Citrus limon cv. Eureka genome v1.0	Citrus limon
csdvaR007	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
csdvbR005	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
csswoR019	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
cszkR014	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
cszkR015	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
csswR019	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
csswR020	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
cmjcsL120	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
cmjcsL257	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
csfhsR022	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
csfhsR024	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
csfhsR029	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cscsnR0030	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cscsnR0032	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cscsnR0033	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cscsnR0035	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
csminR0037	Citrus inodora CRC3784 genome v1.0	Citrus inodora
csminR0041	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cseglR0057	Citrus glauca CRC3463 genome v1	Citrus glauca
cseglR0062	Citrus glauca CRC3463 genome v1	Citrus glauca
ccrcsL0001	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcsL0057	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcsL0611	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcsL1154	Citrus australasica CRC3672 genome v1	Citrus australasica
cscsgR019	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
cscsgR020	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
abhcsL080	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
abhcsL211	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
cizcsL060	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cizcsL320	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cllcsL531	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cllcsL623	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cmxcsL121	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmmcsL162	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
caacsL114	Citrus australasica cv. AZM genome v1.0	Citrus australasica
caacsL308	Citrus australasica cv. AZM genome v1.0	Citrus australasica
chhcsL256	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
chhcsL656	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
csmpkR020	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
csmpkR024	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
clhcsL602	Clausena lansium cv. HP genome v1.0	Clausena lansium
csmpjR022	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
csmpjR024	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
aeacsL167	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
aeacsL346	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
cigcsL514	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
cmhcsL083	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmhcsL210	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cslssR018	Luvunga scandens cv. SYT genome v1.0	Luvunga scandens
cslssR022	Luvunga scandens cv. SYT genome v1.0	Luvunga scandens
cslssR024	Luvunga scandens cv. SYT genome v1.0	Luvunga scandens
clxcsL286	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
clxcsL356	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
cscsjR0026	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cscsjR0029	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
csneiR019	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
csneiR021	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cracsL0080	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cracsL0219	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cracsL0406	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cracsL0855	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cchcsL076	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
ciucsL0144	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucsL0269	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucsL0502	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucsL0847	Citrus inodora genome v1.0 (UQ)	Citrus inodora
cgacsL0145	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacsL0272	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacsL0723	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacsL0852	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgucsL0143	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucsL0274	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucsL0710	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucsL0838	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cscumR018	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
crccsL076	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
crccsL207	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cscstR021	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
cscstR023	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
crmcsL0076	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
crmcsL0217	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
crmcsL0344	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
crmcsL0851	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cricsL0213	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cricsL0345	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cricsL0657	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cricsL0908	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata

Orthologs


Gene/Transcript	Assembly	Species
Cau_v1.primary_g5452.t1	Citrus australasica CRC3672 genome v1	Citrus australasica
hap2-g5678.t1	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
Fh2g32260.1	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
huyou00008195-RA	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
CL2G008362011.t1_pri	Citrus limon L. Burm f. genome v1.0 - Primary	Citrus limon
Fh2g32470.1	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
Aeg262100.1	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
g7458.t1_h1	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
sjg121280.1	Fortunella hindsii genome v1.0	Fortunella hindsii
CP2g000546.t1	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
CL2G044469012.t1_alt	Citrus limon L. Burm f. genome v1.0 - Alternative	Citrus limon
Chh220500.1	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
g6256.t1_h1	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
g7269.t1	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
hap2-g6089.t1	Citrus inodora genome v1.0 (UQ)	Citrus inodora
Ciclev10017918m	Citrus clementina genome v1.0 (JGI)	Citrus clementina
eg_v1.0.primary_g7204.t1	Citrus glauca CRC3463 genome v1	Citrus glauca
g6138.t1	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
NM_gene09402.t1	Citrus limon cv. Eureka genome v1.0	Citrus limon
gene-CUMW_011780-mRNA1	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
mi_v1.0.primary_g5822.t1	Citrus inodora CRC3784 genome v1.0	Citrus inodora
Pt2g025830.1	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
g23733.t1	Citrus australis genome v1.0 (UQ)	Citrus australis
JLX062420.1	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
NM_gene13459.t1	Citrus limon cv. Eureka genome v1.0	Citrus limon
Me_06686.1	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
Ptrif.0002s2752.1.v1.3.1	Poncirus trifoliata genome v1.3.1 (JGI)	Poncirus trifoliata
Cic155870.1	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
hap2-g6375.t1	Citrus glauca genome v1.0 (UQ)	Citrus glauca
SYT238350.1	Luvunga scandens cv. SYT genome v1.0	Luvunga scandens
Cmt163740.1	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
g6104.t1_h2	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
Cms260970.1	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
HP079400.1	Clausena lansium cv. HP genome v1.0	Clausena lansium
mi_v1.0.alternate_g5711.t1	Citrus inodora CRC3784 genome v1.0	Citrus inodora
Citropsis200690.1	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
sjg184940.1	Fortunella hindsii genome v1.0	Fortunella hindsii
g6606.t1_h2	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
hap1-g5515.t1	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
eg_v1.0.alternate_g9308.t1	Citrus glauca CRC3463 genome v1	Citrus glauca
Cg2g042030.1	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
evm.model.ctg78.171	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
Abu2g_004650.1	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
LW300420.1	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
hap1-g6379.t1	Citrus inodora genome v1.0 (UQ)	Citrus inodora
Cau_v1.alternate_g5426.t1	Citrus australasica CRC3672 genome v1	Citrus australasica
hap1-g5627.t1	Citrus glauca genome v1.0 (UQ)	Citrus glauca
Egl100060.1	Citrus australasica cv. AZM genome v1.0	Citrus australasica

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
EVM_prediction_chr9.2_youzi.2513	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
gene-KPL70_005106-mRNA1	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
CsN02G004870.1	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
drCitSine.Jinhong.1.0.HA2g05370.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
EVM_prediction_HIC_ASM_1.2620	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
Csi02G005310.1	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
gene-KPL71_005703-mRNA1	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
Cs2g_pb005080.1	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
EVM_prediction_chr9.1_tiancheng.2698	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
Cs2g06110.2	Citrus sinensis Valencia genome v1.0 (HZAU)	Citrus sinensis
Cs_ont_2g005170.1	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
drCitSine.Jinhong.1.0.HB2g05510.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
orange1.1g039181m.g.v1.1	orange1.1g039181m.g.v1.1_Csinensis_154_v1.1	Citrus sinensis	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
orange1.1g039181m.v1.1	orange1.1g039181m.v1.1_Csinensis_154_v1.1-protein	Citrus sinensis	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
orange1.1g039181m.v1.1.exon.1	orange1.1g039181m.v1.1.exon.1_Csinensis_154_v1.1	Citrus sinensis	exon
orange1.1g039181m.v1.1.exon.2	orange1.1g039181m.v1.1.exon.2_Csinensis_154_v1.1	Citrus sinensis	exon
orange1.1g039181m.v1.1.exon.3	orange1.1g039181m.v1.1.exon.3_Csinensis_154_v1.1	Citrus sinensis	exon
orange1.1g039181m.v1.1.exon.4	orange1.1g039181m.v1.1.exon.4_Csinensis_154_v1.1	Citrus sinensis	exon
orange1.1g039181m.v1.1.exon.5	orange1.1g039181m.v1.1.exon.5_Csinensis_154_v1.1	Citrus sinensis	exon
orange1.1g039181m.v1.1.exon.6	orange1.1g039181m.v1.1.exon.6_Csinensis_154_v1.1	Citrus sinensis	exon
orange1.1g039181m.v1.1.exon.7	orange1.1g039181m.v1.1.exon.7_Csinensis_154_v1.1	Citrus sinensis	exon
orange1.1g039181m.v1.1.exon.8	orange1.1g039181m.v1.1.exon.8_Csinensis_154_v1.1	Citrus sinensis	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
orange1.1g039181m.v1.1.CDS.1	orange1.1g039181m.v1.1.CDS.1_Csinensis_154_v1.1	Citrus sinensis	CDS
orange1.1g039181m.v1.1.CDS.2	orange1.1g039181m.v1.1.CDS.2_Csinensis_154_v1.1	Citrus sinensis	CDS
orange1.1g039181m.v1.1.CDS.3	orange1.1g039181m.v1.1.CDS.3_Csinensis_154_v1.1	Citrus sinensis	CDS
orange1.1g039181m.v1.1.CDS.4	orange1.1g039181m.v1.1.CDS.4_Csinensis_154_v1.1	Citrus sinensis	CDS
orange1.1g039181m.v1.1.CDS.5	orange1.1g039181m.v1.1.CDS.5_Csinensis_154_v1.1	Citrus sinensis	CDS
orange1.1g039181m.v1.1.CDS.6	orange1.1g039181m.v1.1.CDS.6_Csinensis_154_v1.1	Citrus sinensis	CDS
orange1.1g039181m.v1.1.CDS.7	orange1.1g039181m.v1.1.CDS.7_Csinensis_154_v1.1	Citrus sinensis	CDS
orange1.1g039181m.v1.1.CDS.8	orange1.1g039181m.v1.1.CDS.8_Csinensis_154_v1.1	Citrus sinensis	CDS

Homology

The following BLAST results are available for this feature:

BLAST of orange1.1g039181m.v1.1 vs. DB:SwissProt

BLAST of orange1.1g039181m.v1.1 vs. DB:SwissProt
Analysis Date: 2018-06-08 (C. sinensis v1.1 CDS)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA from alignment at scaffold00010:2134983..2137313+
coding sequence from alignment at scaffold00010:2134983..2137313+

mRNA sequence

>orange1.1g039181m.v1.1_Csinensis_154_v1.1 ID=orange1.1g039181m.v1.1_Csinensis_154_v1.1; Name=orange1.1g039181m.v1.1; organism=Citrus sinensis; type=mRNA; length=2331bp
ATGTCCGCCGTAAAATCGATCTCCAGAAAACGAGGCTCCGACACCGTATC
GGACTCGAAACACCGAGTCGTGGACGATTTTGATCCCCATTTCTCAAGGT
CCGTTTCCAAAACGACATTTGATTTTGCGTTTGTTGATGAAGGTTTGTTG
TTCTGATTTTTTAGATGAAATTGCAGTGACTTGAAAGGTATTATGTCGGC
GCTGCAGCAGATCAGAGAGAAAGCACAGAGGGACGGTCAAAAGAAGAACG
AAGAGACGATCTCTAGGTAATTTTTtCTCGCTAATTGATTTtAGCTTGGA
CATTGAAGATTTATTTGCCTATAATTTGCTTATAATAATTTCTTtAAAAA
aTATCAAATGTAGTTATTGTTTGGTTAGATTATTTATTTCGTATTTTTGG
TTACTTGTTAGCTTCTGCTTTTTTTAATTCAATTTTTTATGATTCATGAT
TCTTAATTGCTTGTGCATGATGCGTAAAGAATTTGTCATAGCTACCAAAT
GCACAAGCAATTTTTTATGATTCATGATTCTTACCTTCAGCTTGAGTCAC
TTCATTTTTTGATATTCCTTTTCATTTACCATAAATCAACAATGCAAACA
ATTAGTTTCACACTTACATCAGCTAAGAACGATCGAAGCCTTTTTGTTAC
TGAAAGCTAGAAAAATATTGAAATGATTTTTAGAAAAGAATTTGATGAGT
GTTTTCTTGAGAGTATCTTTTAGATCTGAAATGTACTCGAAGTGTTTATG
TTGAGAAACATTTGATACTCCTAGCTAAAATTTATAACCATGGATCGCAT
AAAAATAATGATAAATATTCCTGCAAAAGCATATTTGCTTGTAAGTGCTG
CtATAAATATAACATACCTAAGCTCCATTTTTCAGCTTTGAAAAACAGTA
TGGTGTTTTGTTAAATGTGCTCAAGTTATATTGTTATGTTTGTGCTTCCT
TTGCTCTTTATGTACCAATTCTaCAATTATAGTGAATAATTTATGTTTCG
ATACAGTGTTGCTACTGAAATCCGGTCTAAGATTGATGAACTGAGGTCCA
AAATCGAGAAGGATAGGTAAAATTTAAATCTCTTAGTACACTTCAGTAAC
CAGATCGAACATCTAACTTTAATTTGTGCACAAACTATACTATTTTATTC
CTTTTTGCATTTTCATTGCAGACAGAGTTTTGCTAAGGCATtATCGAAGA
GCTCAAAAGAGGTTTGATGTGAACAAAGGAACTTGaCTtAAGATTGCTGG
AGATGAATTTTAGGTTTAGCTATGCTTTTTgTTTTTAGAGTTATCCAATA
GATTGTTTGGATAAGATATGTGGTTAAAtattttCAGTGTGAAAGTTGCT
TGAAGAATGAGACTGCCAAGTTCCAAGATGTTTATGAGAAATTCTGCAAG
GAGAGAGCTGCTCATCTTCAAGTCTTAAAAGGTATGCCCTGCTGCTGTTT
GTTTCTTTTGGTCTTTCGGtCTTTTGGCTTGTGGTCCAGAAGGATTTAAA
CTCAAAACAATGTTGTAaATTTATGTATGAATTCGTCATCAACTAATTTA
TTTATTTTTCATTATCATATTTAAACTGCGTCTTTTAAACCGGATTCATT
GTTTTTAAAAGTAATTTGGTTTGTCAGCTTTAAGGATTGCTTCTCTCTAA
GTACCCTGTACATGCAACAAAGCACAATCCCATCGTGTCTAGGCTGGTAG
CATGGTTGTAATGTTATtATGTTACCCTGAAATACATACCAAATTGAGGA
GTTGGCTGCATTTTTCCTGAAGCACTATGGAAAGTGAAAAAAATAGGGCC
TAAACCATTGGTCAATGTCCTGCAACCAGTCAACACTAGAGTTGTCAACT
CAGAAATAATTCTTGCTTAGTGATATGATTCTGTTTGAAGTGTTACTGGT
AAATAACTTTATCTTTTGCACTGACAGATACTATTTCCAAGTTTGAAGAG
GACAAGGAAAGACTGTTCATGCgCTATGAACAACTAAGTAAGCAACAATA
TTCTATTTCCCCCTTGTTAGAAACTTAATTCCACTGATCTGGTGGCTCTT
TGAAATCAGGGAAGAAAGAAAAGAGTTTGATATCTGAACAAGAGAAATAC
TGTGCTGATAAAATTGCTAACTTGGAGTCGTCCTTGAAAAAGAAGAAGCA
cGTAAGCAAATTATATGCATCAAGTTGCTAGATTGCTGGTTTGTTTGCAT
TCATGTTAgTAGCCATAAATTAGATTTTACTTTTTGGAAAACAGGATGAC
AAAACTTTCAGCATTTTGAGGAAAACTATCGGTTCATTTCTTGGCAATGC
CTCGGATGAGGACTTCTTGCCTGATGATTAA

mRNA from alignment at scaffold00010:2134983..2137313+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=2331bp; location=Sequence derived from: scaffold00010:2134983..2137313+ (Citrus sinensis
ATGTCCGCCGTAAAATCGATCTCCAGAAAACGAGGCTCCGACACCGTATC
GGACTCGAAACACCGAGTCGTGGACGATTTTGATCCCCATTTCTCAAGGT
CCGTTTCCAAAACGACATTTGATTTTGCGTTTGTTGATGAAGGTTTGTTG
TTCTGATTTTTTAGATGAAATTGCAGTGACTTGAAAGGTATTATGTCGGC
GCTGCAGCAGATCAGAGAGAAAGCACAGAGGGACGGTCAAAAGAAGAACG
AAGAGACGATCTCTAGGTAATTTTTtCTCGCTAATTGATTTtAGCTTGGA
CATTGAAGATTTATTTGCCTATAATTTGCTTATAATAATTTCTTtAAAAA
aTATCAAATGTAGTTATTGTTTGGTTAGATTATTTATTTCGTATTTTTGG
TTACTTGTTAGCTTCTGCTTTTTTTAATTCAATTTTTTATGATTCATGAT
TCTTAATTGCTTGTGCATGATGCGTAAAGAATTTGTCATAGCTACCAAAT
GCACAAGCAATTTTTTATGATTCATGATTCTTACCTTCAGCTTGAGTCAC
TTCATTTTTTGATATTCCTTTTCATTTACCATAAATCAACAATGCAAACA
ATTAGTTTCACACTTACATCAGCTAAGAACGATCGAAGCCTTTTTGTTAC
TGAAAGCTAGAAAAATATTGAAATGATTTTTAGAAAAGAATTTGATGAGT
GTTTTCTTGAGAGTATCTTTTAGATCTGAAATGTACTCGAAGTGTTTATG
TTGAGAAACATTTGATACTCCTAGCTAAAATTTATAACCATGGATCGCAT
AAAAATAATGATAAATATTCCTGCAAAAGCATATTTGCTTGTAAGTGCTG
CtATAAATATAACATACCTAAGCTCCATTTTTCAGCTTTGAAAAACAGTA
TGGTGTTTTGTTAAATGTGCTCAAGTTATATTGTTATGTTTGTGCTTCCT
TTGCTCTTTATGTACCAATTCTaCAATTATAGTGAATAATTTATGTTTCG
ATACAGTGTTGCTACTGAAATCCGGTCTAAGATTGATGAACTGAGGTCCA
AAATCGAGAAGGATAGGTAAAATTTAAATCTCTTAGTACACTTCAGTAAC
CAGATCGAACATCTAACTTTAATTTGTGCACAAACTATACTATTTTATTC
CTTTTTGCATTTTCATTGCAGACAGAGTTTTGCTAAGGCATtATCGAAGA
GCTCAAAAGAGGTTTGATGTGAACAAAGGAACTTGaCTtAAGATTGCTGG
AGATGAATTTTAGGTTTAGCTATGCTTTTTgTTTTTAGAGTTATCCAATA
GATTGTTTGGATAAGATATGTGGTTAAAtattttCAGTGTGAAAGTTGCT
TGAAGAATGAGACTGCCAAGTTCCAAGATGTTTATGAGAAATTCTGCAAG
GAGAGAGCTGCTCATCTTCAAGTCTTAAAAGGTATGCCCTGCTGCTGTTT
GTTTCTTTTGGTCTTTCGGtCTTTTGGCTTGTGGTCCAGAAGGATTTAAA
CTCAAAACAATGTTGTAaATTTATGTATGAATTCGTCATCAACTAATTTA
TTTATTTTTCATTATCATATTTAAACTGCGTCTTTTAAACCGGATTCATT
GTTTTTAAAAGTAATTTGGTTTGTCAGCTTTAAGGATTGCTTCTCTCTAA
GTACCCTGTACATGCAACAAAGCACAATCCCATCGTGTCTAGGCTGGTAG
CATGGTTGTAATGTTATtATGTTACCCTGAAATACATACCAAATTGAGGA
GTTGGCTGCATTTTTCCTGAAGCACTATGGAAAGTGAAAAAAATAGGGCC
TAAACCATTGGTCAATGTCCTGCAACCAGTCAACACTAGAGTTGTCAACT
CAGAAATAATTCTTGCTTAGTGATATGATTCTGTTTGAAGTGTTACTGGT
AAATAACTTTATCTTTTGCACTGACAGATACTATTTCCAAGTTTGAAGAG
GACAAGGAAAGACTGTTCATGCgCTATGAACAACTAAGTAAGCAACAATA
TTCTATTTCCCCCTTGTTAGAAACTTAATTCCACTGATCTGGTGGCTCTT
TGAAATCAGGGAAGAAAGAAAAGAGTTTGATATCTGAACAAGAGAAATAC
TGTGCTGATAAAATTGCTAACTTGGAGTCGTCCTTGAAAAAGAAGAAGCA
cGTAAGCAAATTATATGCATCAAGTTGCTAGATTGCTGGTTTGTTTGCAT
TCATGTTAgTAGCCATAAATTAGATTTTACTTTTTGGAAAACAGGATGAC
AAAACTTTCAGCATTTTGAGGAAAACTATCGGTTCATTTCTTGGCAATGC
CTCGGATGAGGACTTCTTGCCTGATGATTAA

Coding sequence (CDS) from alignment at scaffold00010:2134983..2137313+

>orange1.1g039181m.v1.1_Csinensis_154_v1.1 ID=orange1.1g039181m.v1.1_Csinensis_154_v1.1; Name=orange1.1g039181m.v1.1; organism=Citrus sinensis; type=CDS; length=621bp; location=Sequence derived from: scaffold00010:2134983..2137313+ (Citrus sinensis
ATGTCCGCCGTAAAATCGATCTCCAGAAAACGAGGCTCCGACACCGTATC
GGACTCGAAACACCGAGTCGTGGACGATTTTGATCCCCATTTCTCAAGTG
ACTTGAAAGGTATTATGTCGGCGCTGCAGCAGATCAGAGAGAAAGCACAG
AGGGACGGTCAAAAGAAGAACGAAGAGACGATCTCTAGTGTTGCTACTGA
AATCCGGTCTAAGATTGATGAACTGAGGTCCAAAATCGAGAAGGATAGAC
AGAGTTTTGCTAAGGCATtATCGAAGAGCTCAAAAGAGTGTGAAAGTTGC
TTGAAGAATGAGACTGCCAAGTTCCAAGATGTTTATGAGAAATTCTGCAA
GGAGAGAGCTGCTCATCTTCAAGTCTTAAAAGATACTATTTCCAAGTTTG
AAGAGGACAAGGAAAGACTGTTCATGCgCTATGAACAACTAAGGAAGAAA
GAAAAGAGTTTGATATCTGAACAAGAGAAATACTGTGCTGATAAAATTGC
TAACTTGGAGTCGTCCTTGAAAAAGAAGAAGCAcGATGACAAAACTTTCA
GCATTTTGAGGAAAACTATCGGTTCATTTCTTGGCAATGCCTCGGATGAG
GACTTCTTGCCTGATGATTAA