orange1.1g039458m.v1.1, orange1.1g039458m.v1.1_Csinensis_154_v1.1 (mRNA) Citrus sinensis
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of orange1.1g039458m.v1.1 vs. DB:SwissProt
Match: NHL2_ARATH (NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.482e-13 Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 1 Query: 34 LLCAIFFTPIFVVGIIFLILWLSLRPHHPKFHV-----KQFTLQGLGQTTGYLNVNVTVRNPSHRVRICYDSMRGSVYYKDQRVGVVSVFESHYQEPKNTTIL 327
L+C I ++G+ LILWL RP+ KF+V +F+ L++N T+RNP+ RV + YD S YY DQR G +V S YQ KNTT++
Sbjct: 54 LICNILIAVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNNNLHYSLDLNFTIRNPNQRVGVYYDEFSVSGYYGDQRFGSANV-SSFYQGHKNTTVI 155
BLAST of orange1.1g039458m.v1.1 vs. DB:SwissProt
Match: NHL3_ARATH (NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=NHL3 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.817e-13 Identity = 38/99 (38.38%), Postives = 54/99 (54.55%), Query Frame = 1 Query: 46 IFFTPIFVVGIIFLILWLSLRPHHPKFHVK-----QFTLQGLGQTTGYLNVNVTVRNPSHRVRICYDSMRGSVYYKDQRVGVVSVFESHYQEPKNTTIL 327
I T ++GI LI+WL RP+ KFHV +FTL L++N T+RNP+ R+ + YD + YY DQR G+ + YQ KNTT++
Sbjct: 51 ILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNLRYNLDLNFTIRNPNRRIGVYYDEIEVRGYYGDQRFGMSNNISKFYQGHKNTTVV 149
BLAST of orange1.1g039458m.v1.1 vs. DB:SwissProt
Match: NHL10_ARATH (NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 2.165e-9 Identity = 34/104 (32.69%), Postives = 53/104 (50.96%), Query Frame = 1 Query: 34 LLCAIFFTPIFVVGIIFLILWLSLRPHHPKFHVKQFTLQGLGQTTG------YLNVNVTVRNPSHRVRICYDSMRGSVYYKDQRVGVVSVFESHYQEPKNTTIL 327
L + + I ++G+ LI WL +RP KFHV +L T+ L + V VRNP+ R+ + YD + YY+ +R +++ YQ KNTT+L
Sbjct: 40 LFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITL-TPFYQGHKNTTVL 142
BLAST of orange1.1g039458m.v1.1 vs. DB:SwissProt
Match: NHL13_ARATH (NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 2.901e-8 Identity = 39/139 (28.06%), Postives = 64/139 (46.04%), Query Frame = 1 Query: 28 CRLLCAIFFTPIFVVGIIFLILWLSLRPHHPKFHVKQFTLQGL-----GQTTGYLNVNVTVRNPSHRVRICYDSMRG-SVYYKDQRV--GVVSVFESHYQEPKNTTILHYVYNEPLTLTTQASNNQRTIEIMNDLIKYK 420
C L A+F I + GI F +L+L RP PK+ ++ F++ G+ + NV V RN + ++ + Y+ VYY D + GV+ VF YQ KN T++ V + T + E+ + +K
Sbjct: 76 CSFLAAVFIL-IVLAGISFAVLYLIYRPEAPKYSIEGFSVSGINLNSTSPISPSFNVTVRSRNGNGKIGVYYEKESSVDVYYNDVDISNGVMPVF---YQPAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKTVPFK 210 The following BLAST results are available for this feature:
BLAST of orange1.1g039458m.v1.1 vs. DB:SwissProt
Analysis Date: 2018-06-08 (C. sinensis v1.1 CDS) Total hits: 4 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >orange1.1g039458m.v1.1_Csinensis_154_v1.1 ID=orange1.1g039458m.v1.1_Csinensis_154_v1.1; Name=orange1.1g039458m.v1.1; organism=Citrus sinensis; type=mRNA; length=583bpback to top mRNA from alignment at scaffold00010:1098817..1099399+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=583bp; location=Sequence derived from: scaffold00010:1098817..1099399+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at scaffold00010:1098817..1099399+ >orange1.1g039458m.v1.1_Csinensis_154_v1.1 ID=orange1.1g039458m.v1.1_Csinensis_154_v1.1; Name=orange1.1g039458m.v1.1; organism=Citrus sinensis; type=CDS; length=540bp; location=Sequence derived from: scaffold00010:1098817..1099399+ (Citrus sinensisback to top |