orange1.1g045986m.v1.1, orange1.1g045986m.v1.1_Csinensis_154_v1.1 (mRNA) Citrus sinensis
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of orange1.1g045986m.v1.1 vs. DB:SwissProt
Match: ATL74_ARATH (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 1.892e-12 Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 1 Query: 196 LWDRPLRHQRVIEKLPPAEKYDGHLHNKKFTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSI 432 + DR +R ++K P AE G + K +EC ICL EF G+ R+LP C H +H CI W +CP CR S+ Sbjct: 74 VADRAGLKKRELKKFPVAEYGSGEV--KIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSL 150
BLAST of orange1.1g045986m.v1.1 vs. DB:SwissProt
Match: ATL10_ARATH (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 1.386e-11 Identity = 26/61 (42.62%), Postives = 34/61 (55.74%), Query Frame = 1 Query: 244 PAEKYDGHLHNKKFTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRS 426 P Y ++ ECVICL +FVSG+ R+LP C H +H CI +W TCP CR+ Sbjct: 118 PVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRN 178
BLAST of orange1.1g045986m.v1.1 vs. DB:SwissProt
Match: ATL77_ARATH (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 1.729e-11 Identity = 26/63 (41.27%), Postives = 36/63 (57.14%), Query Frame = 1 Query: 235 KLPPAEKYDGHLHNKKFTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICR 423 K+ P Y ++ ECVICL +FV+G+ R+LP C H +H CI +W + TCP CR Sbjct: 110 KMLPVVNYSPEINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCR 172
BLAST of orange1.1g045986m.v1.1 vs. DB:SwissProt
Match: ATL44_ARATH (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=2 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 3.733e-11 Identity = 25/74 (33.78%), Postives = 38/74 (51.35%), Query Frame = 1 Query: 217 HQRVIEKLP-----PAEKYDGHLHNKKFTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICR 423 ++ ++ LP AE G + ++EC ICL +F G+ R+LP C H +H CI +W +CP CR Sbjct: 71 KKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCR 144
BLAST of orange1.1g045986m.v1.1 vs. DB:SwissProt
Match: ATL31_ORYSJ (E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0188200 PE=2 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 4.278e-11 Identity = 28/73 (38.36%), Postives = 39/73 (53.42%), Query Frame = 1 Query: 220 QRVIEKLPPAEKYD--GHLHNKKFTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSI 432 + V+E P A D + K EC +CL EF D R+LP C HV+H CI W + TCP+CR+++ Sbjct: 106 KEVVEAFPTAVYGDVKARMAAKSGPLECAVCLAEFADSDELRVLPACCHVFHPDCIDPWLAAAVTCPLCRANL 178
BLAST of orange1.1g045986m.v1.1 vs. DB:SwissProt
Match: ATL75_ARATH (RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 5.497e-11 Identity = 26/60 (43.33%), Postives = 33/60 (55.00%), Query Frame = 1 Query: 244 PAEKYDGHLHNKKFTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICR 423 P Y ++ ECVICL +FVSG+ R+LP C H +H CI +W TCP CR Sbjct: 119 PVVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCR 178
BLAST of orange1.1g045986m.v1.1 vs. DB:SwissProt
Match: ATL3_ARATH (RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 6.212e-11 Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 1 Query: 292 ECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSI 432 EC ICL E V GD R+LP C H +H CI WF TCPICR+++ Sbjct: 126 ECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172
BLAST of orange1.1g045986m.v1.1 vs. DB:SwissProt
Match: RNF12_HUMAN (E3 ubiquitin-protein ligase RLIM OS=Homo sapiens OX=9606 GN=RLIM PE=1 SV=3) HSP 1 Score: 62.3882 bits (150), Expect = 6.644e-11 Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 1 Query: 295 CVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSI 432 C +C+ E+ G+ R LP C H YH HCI RW S+ TCPICR ++ Sbjct: 570 CSVCITEYTEGNKLRKLP-CSHEYHVHCIDRWLSENSTCPICRRAV 614
BLAST of orange1.1g045986m.v1.1 vs. DB:SwissProt
Match: RNF12_XENTR (E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis OX=8364 GN=rnf12 PE=2 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 6.669e-11 Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 1 Query: 295 CVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSI 432 C +C+ E+ G+ R LP C H YH HCI RW S+ TCPICR ++ Sbjct: 585 CSVCITEYTEGNKLRKLP-CSHEYHVHCIDRWLSENSTCPICRRAV 629
BLAST of orange1.1g045986m.v1.1 vs. DB:SwissProt
Match: ATL76_ARATH (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 7.384e-11 Identity = 26/60 (43.33%), Postives = 33/60 (55.00%), Query Frame = 1 Query: 244 PAEKYDGHLHNKKFTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICR 423 P Y ++ ECVICL +FVSG+ R+LP C H +H CI +W TCP CR Sbjct: 118 PVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCR 177 The following BLAST results are available for this feature:
BLAST of orange1.1g045986m.v1.1 vs. DB:SwissProt
Analysis Date: 2018-06-08 (C. sinensis v1.1 CDS) Total hits: 10 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >orange1.1g045986m.v1.1_Csinensis_154_v1.1 ID=orange1.1g045986m.v1.1_Csinensis_154_v1.1; Name=orange1.1g045986m.v1.1; organism=Citrus sinensis; type=mRNA; length=447bpback to top mRNA from alignment at scaffold00010:1929670..1930116- Legend: CDSpolypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=447bp; location=Sequence derived from: scaffold00010:1929670..1930116- (Citrus sinensisback to top Coding sequence (CDS) from alignment at scaffold00010:1929670..1930116- >orange1.1g045986m.v1.1_Csinensis_154_v1.1 ID=orange1.1g045986m.v1.1_Csinensis_154_v1.1; Name=orange1.1g045986m.v1.1; organism=Citrus sinensis; type=CDS; length=447bp; location=Sequence derived from: scaffold00010:1929670..1930116- (Citrus sinensisback to top |