orange1.1g046164m.v1.1, orange1.1g046164m.v1.1_Csinensis_154_v1.1 (mRNA) Citrus sinensis
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of orange1.1g046164m.v1.1 vs. DB:SwissProt
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa OX=35889 GN=N PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.185e-15 Identity = 44/127 (34.65%), Postives = 69/127 (54.33%), Query Frame = 1 Query: 85 RRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKK----VIPIFYDVKPSQLQVPDNGTCSRKELQRFSRALEE 453 R DVF++ RG DT++T L++ L+ + F D K ++ G + ++ AI+ + + VFS Y S +CL+EL IME + + VIPIFYDV PS + R + + F++A EE Sbjct: 9 RWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHV---------RNQKESFAKAFEE 126
BLAST of orange1.1g046164m.v1.1 vs. DB:SwissProt
Match: TIK_ARATH (TIR domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=TIK PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.579e-14 Identity = 44/109 (40.37%), Postives = 62/109 (56.88%), Query Frame = 1 Query: 61 HQIQLPITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKK----VIPIFYDVK 375 Q+Q P++ + VFIN RG + + L L +N F+D+K K G RL + T IK K+ +A+FS RYCES +CL EL + E K+ VIPIFY+V+ Sbjct: 3 EQVQEPLSDQ---VFINFRGDELREIFVNHLELQLRNAGINVFIDTKEQK-GRRL-QYLFTRIKKSKIALAIFSKRYCESKWCLDELVTMNEQMKEKKLVVIPIFYNVR 106
BLAST of orange1.1g046164m.v1.1 vs. DB:SwissProt
Match: TIR_ARATH (Toll/interleukin-1 receptor-like protein OS=Arabidopsis thaliana OX=3702 GN=TIR PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.214e-13 Identity = 46/141 (32.62%), Postives = 71/141 (50.35%), Query Frame = 1 Query: 97 DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKK----VIPIFYDVKPSQLQVPDNGTCSRKELQRFSRALEEA--KYTVGLT-FDSINGD 498 DVF++ RG DT+ L+ L R + F D K ++ G R ++ + I+ + V V S Y S +CL EL IM+ KK V+PIFY V+P+ ++ G + + + SR E K+ LT F ++GD Sbjct: 10 DVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRW-QTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGD 149
BLAST of orange1.1g046164m.v1.1 vs. DB:SwissProt
Match: RLM3_ARATH (Disease resistance protein RLM3 OS=Arabidopsis thaliana OX=3702 GN=RLM3 PE=2 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 4.623e-11 Identity = 51/165 (30.91%), Postives = 80/165 (48.48%), Query Frame = 1 Query: 97 DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKK----VIPIFYDVKPSQL--QVPDNG-----TC---SRKELQRFSRALEEAKYTVGLTFDSINGDWSEFLTTATDAVINNLI 549 DVF N RG D + ++ L L R +N F D++ ++ ++ ++ AI++ ++ + VFS Y S +CL EL I E +K VIPIFY V PS + Q + G TC + E +++ RAL E + G + + +E L V N L Sbjct: 10 DVFPNFRGEDVRHSLVSHLRKELDRKFINTFNDNR-IERSRKITPELLLAIENSRISLVVFSKNYASSTWCLDELVKIQECYEKLDQMVIPIFYKVDPSHVRKQTGEFGMVFGETCKGRTENEKRKWMRALAEVAHLAGEDLRNWRSE-AEMLENIAKDVSNKLF 172
BLAST of orange1.1g046164m.v1.1 vs. DB:SwissProt
Match: CSA1_ARATH (Disease resistance-like protein CSA1 OS=Arabidopsis thaliana OX=3702 GN=CSA1 PE=4 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 7.326e-11 Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = 1 Query: 100 VFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKK----VIPIFYDVKPSQLQ--VPDNG--------TCSRKELQRFSRALEEAKYTVGLTFDSINGDWSEFLTTATDAVINNLI 549 VFIN RG + ++ L L R +N F+D+ + + G L ++ I+ ++ +A+FSPRY ES +CL ELA + E ++ VIPIFY V+P ++ D G + +K + + AL+ + G+ D + D VIN +I Sbjct: 19 VFINFRGVELRKNFVSHLEKGLKRKGINAFIDT-DEEMGQELSVLLER-IEGSRIALAIFSPRYTESKWCLKELAKMKERTEQKELVVIPIFYKVQPVTVKELKGDFGDKFRELVKSTDKKTKKEWKEALQYVPFLTGIVLDE---------KSDEDEVINIII 171
BLAST of orange1.1g046164m.v1.1 vs. DB:SwissProt
Match: VICTR_ARATH (Protein VARIATION IN COMPOUND TRIGGERED ROOT growth response OS=Arabidopsis thaliana OX=3702 GN=VICTR PE=1 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 9.432e-11 Identity = 46/145 (31.72%), Postives = 75/145 (51.72%), Query Frame = 1 Query: 97 DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKK-VIPIFYDVKPSQL--QVPDNG-----TCSRKELQ---RFSRALEEAKYTVGLTFDSINGD 498 DVF++ G D + T L R ++ F D++ ++ L+ ++ AIK ++ V VFS Y S +CL+EL I+ K +IP+FY V PSQ+ Q+ + G TC R+ + ++ +AL + +G FDS D Sbjct: 13 DVFLSFSGKDVRVTFRSHFLKELDRKLISAFRDNE-IERSHSLWPDLEQAIKDSRIAVVVFSKNYASSSWCLNELLEIVNCNDKIIIPVFYGVDPSQVRYQIGEFGSIFEKTCKRQTEEVKNQWKKALTDVANMLG--FDSAKWD 154
BLAST of orange1.1g046164m.v1.1 vs. DB:SwissProt
Match: TAO1_ARATH (Disease resistance protein TAO1 OS=Arabidopsis thaliana OX=3702 GN=TAO1 PE=4 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 1.019e-10 Identity = 42/138 (30.43%), Postives = 71/138 (51.45%), Query Frame = 1 Query: 100 VFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKK----VIPIFYDVKPSQL--QVPDNGTCSRKE--------LQRFSRALEEAKYTVG 471 VF++ RG D ++ + + R + PF+D++ MK G + ++ AI+ K+ + + S Y S +CL EL IM+ R++ V+ +FYDV PS + Q D G +K +QR+ +AL A +G Sbjct: 42 VFLSFRGEDVRKGLLSHIQKEFQRNGITPFIDNE-MKRGGSIGPELLQAIRGSKIAIILLSRNYGSSKWCLDELVEIMKCREELGQTVMTVFYDVDPSDVRKQKGDFGKVFKKTCVGRPEEMVQRWKQALTSAANILG 178
BLAST of orange1.1g046164m.v1.1 vs. DB:SwissProt
Match: RPP4_ARATH (Disease resistance protein RPP4 OS=Arabidopsis thaliana OX=3702 GN=RPP4 PE=1 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 2.104e-10 Identity = 45/142 (31.69%), Postives = 70/142 (49.30%), Query Frame = 1 Query: 88 RPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKK----VIPIFYDVKPSQLQVPDNG-------TCSRK---ELQRFSRALEEAKYTVG 471 R DVF + G D ++T L + L R +N F+D ++ + D + TAI+ ++ + +FS Y S +CL+EL I + KK VIP+FY V PS ++ G TC K + QR+ +AL + G Sbjct: 11 RRYDVFPSFSGVDVRKTFLSHLIEALDRRSINTFMDHGIVRSC-IIADALITAIREARISIVIFSENYASSTWCLNELVEIHKCYKKGEQMVIPVFYGVDPSHVRKQIGGFGDVFKKTCEDKPEDQKQRWVKALTDISNLAG 151
BLAST of orange1.1g046164m.v1.1 vs. DB:SwissProt
Match: P2A05_ARATH (Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana OX=3702 GN=PP2A5 PE=2 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 2.434e-10 Identity = 35/93 (37.63%), Postives = 51/93 (54.84%), Query Frame = 1 Query: 100 VFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIME----SRKKVIPIFY 366 VFIN RG D ++ L L + ++N F+D + + G L DT I K+ + +FS YCES++C+ EL I E +R +IPIFY Sbjct: 24 VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEER-GKYLISLFDT-IGESKIALVIFSEGYCESHWCMDELVKIKEYMDQNRLIIIPIFY 114
BLAST of orange1.1g046164m.v1.1 vs. DB:SwissProt
Match: LAZ5_ARATH (Disease resistance protein LAZ5 OS=Arabidopsis thaliana OX=3702 GN=LAZ5 PE=1 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 2.548e-10 Identity = 43/160 (26.88%), Postives = 75/160 (46.88%), Query Frame = 1 Query: 100 VFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDR--LFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKK----VIPIFYDVKPSQ---------LQVPDNGTCSRKELQRFSRALEEAKYTVGLTFDSINGDWSEFLTTATDAV 534 VFIN RG D + L L+ + ++D++ + D LF +I+ + ++ +++FS Y ES +CL EL IME KK ++P+F++VKP + L++ G R + + AL +GL + + E L D++ Sbjct: 14 VFINFRGADLRNGFISHLAGALTSAGITYYIDTEEVPSEDLTVLFKRIEES----EIALSIFSSNYAESKWCLDELVKIMEQVKKGKLRIMPVFFNVKPEEVREQNGEFGLKLYGEGKSKRPNIPNWENALRSVPSKIGLNLANFRNE-KELLDKIIDSI 168 The following BLAST results are available for this feature:
BLAST of orange1.1g046164m.v1.1 vs. DB:SwissProt
Analysis Date: 2018-06-08 (C. sinensis v1.1 CDS) Total hits: 10 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >orange1.1g046164m.v1.1_Csinensis_154_v1.1 ID=orange1.1g046164m.v1.1_Csinensis_154_v1.1; Name=orange1.1g046164m.v1.1; organism=Citrus sinensis; type=mRNA; length=984bpback to top mRNA from alignment at scaffold00010:1897876..1898859- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=984bp; location=Sequence derived from: scaffold00010:1897876..1898859- (Citrus sinensisback to top Coding sequence (CDS) from alignment at scaffold00010:1897876..1898859- >orange1.1g046164m.v1.1_Csinensis_154_v1.1 ID=orange1.1g046164m.v1.1_Csinensis_154_v1.1; Name=orange1.1g046164m.v1.1; organism=Citrus sinensis; type=CDS; length=609bp; location=Sequence derived from: scaffold00010:1897876..1898859- (Citrus sinensisback to top |