Transcript Overview
| Name | Cs6g12530.1 |
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| Unique Name | Cs6g12530.1_Hzau_Valencia_v1.0 |
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| Type | mRNA |
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| Organism | Citrus sinensis (Sweet orange) |
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| Sequence length | 2073 |
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Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Cs6g12530.1 | Cs6g12530.1_Hzau_Valencia_v2.0-protein | Citrus sinensis | polypeptide |
| Cs6g12530.1_Hzau_Valencia_v1.0 | Cs6g12530.1_Hzau_Valencia_v1.0 | Citrus sinensis | polypeptide |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Cs6g12530.1.exon.1 | Cs6g12530.1.exon.1_Hzau_Valencia_v1.0 | Citrus sinensis | exon |
| Cs6g12530.1.exon.2 | Cs6g12530.1.exon.2_Hzau_Valencia_v1.0 | Citrus sinensis | exon |
| Cs6g12530.1.exon.3 | Cs6g12530.1.exon.3_Hzau_Valencia_v1.0 | Citrus sinensis | exon |
| Cs6g12530.1.exon.4 | Cs6g12530.1.exon.4_Hzau_Valencia_v1.0 | Citrus sinensis | exon |
| Cs6g12530.1.exon.5 | Cs6g12530.1.exon.5_Hzau_Valencia_v1.0 | Citrus sinensis | exon |
| Cs6g12530.1.exon.6 | Cs6g12530.1.exon.6_Hzau_Valencia_v1.0 | Citrus sinensis | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Cs6g12530.1.cds.1 | Cs6g12530.1.cds.1_Hzau_Valencia_v1.0 | Citrus sinensis | CDS |
| Cs6g12530.1.cds.2 | Cs6g12530.1.cds.2_Hzau_Valencia_v1.0 | Citrus sinensis | CDS |
| Cs6g12530.1.cds.3 | Cs6g12530.1.cds.3_Hzau_Valencia_v1.0 | Citrus sinensis | CDS |
| Cs6g12530.1.cds.4 | Cs6g12530.1.cds.4_Hzau_Valencia_v1.0 | Citrus sinensis | CDS |
| Cs6g12530.1.cds.5 | Cs6g12530.1.cds.5_Hzau_Valencia_v1.0 | Citrus sinensis | CDS |
| Cs6g12530.1.cds.6 | Cs6g12530.1.cds.6_Hzau_Valencia_v1.0 | Citrus sinensis | CDS |
Homology
The following BLAST results are available for this feature:
BLAST of Cs6g12530.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 ( C. sinensis v2.0, HZAU CDS)
Total hits: 0
| Match Name | E-value | Identity | Description | |
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InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 649..668 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 147..189 |
| None | No IPR available | PANTHER | PTHR31973 | FAMILY NOT NAMED | coord: 8..315
coord: 315..421
coord: 451..689 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cs6g12530.1_Hzau_Valencia_v1.0 ID=Cs6g12530.1_Hzau_Valencia_v1.0; Name=Cs6g12530.1; organism=Citrus sinensis; type=mRNA; length=2073bp
ATGTTACCAATACAACTACATATAATCTACAAAGGCAAAAAACATTGTAA
ATGGTCGATTGAACCAAATGAATACAGTCTGCTGCAGCTGAAGAATGAGG
TGGTAAAGATTACAAGTCAAAACGGGTTAACCACTCCTGAAAGTGTGCAA
TTACTTGTCACCAGCCTAAGGAATAATGTGGAAGTTATTGTAGATATTGA
TGCAATGTTGCGGATTATGTTCATGGTACATGACTCATTACAAGTGCTAG
TATTTAAAGTCACTGTGTTGCCAACCCTACGTCCTGATTTAGAACTTGGT
GGGGTGATACAATCCCTGCTACATGCCTTAGGAGTTCCGCTATCTGCAGA
GCAAGTTGCATGGGTAAATGAAAGTGAAAATGAACCACCATCTAGGCTTG
TAGGCATACATGGGCCACAAATAAACCTTGCTGAGAATGTTGGGTGTGAG
ACTGATGTTAATGAAGATGAATCACCTTCTAAGAGTAAAGGCAGAGACGA
ACCACAAATTGTTAAGAATGAGAATGTTCAGCAGAATGTTGATGACAACG
ACGATGATGATTGGTTGTCAGATTTTAACAAAGAATTTACTACTGATGGT
AGTCGTATAAATCACCAAAACATAGCTGAGGATGCAGAAGTTATGGATGA
TGGGGGATCTAGCTCTGACGATGAATCAATTGATGCAAATCCTCAATTAT
TGGCAAATACATCTTACTCAGATTTTGATTTGGGCATTACTCAATTAAAA
GATTATATTGAAGTGCATATGTATAAGCCAAGGCCTGATGGTAAGCATAA
ACTGAGGTTAGGAGATGTGTTTGATGATGTTGACCACTTTAGGAAGGTGT
TGGGTGAAGTGATGGTGGATAAAAACTTTGAAATTGCAAAGGTGTACAAT
GATTGTATGAGATTTTACGGTAAATACAAGATTGATGGCTGTTCATGCAA
ATGGATAGCAGAGAAAATAAAGAGCAAAGTCGTTGTGGATCCTCATGTGA
AGATTTCTGTTCTTCACGAGTTTATGCAAGAGACGTTTGGTGTGAGGATA
GGGAATTTAAAGTTGTATAGAGCCAGAGAGAGGGCAAGGACAGACATTCA
TGGAGACCATGCAAGGGGCTATGAGGATCTCTTTCAATATGCTGCGGTGA
TTCTGAAGTATGATCCAGCCCAAAGAAATGCACTTTATAATGGTTGTAGG
CCATACATTGGGTTGGACGGATGTCATTTGAAATCAAAGTATGGTGGAGT
TCTATTAGCTGCTATCAGATCACCTTTTGCAGTGATAGGCAAAAGATTGC
TGGGAGCAATTAGGAATACACAGTTGACTGCATTTTATAGATCATCCTGG
AGTTACTTTGAGAATCTGTTTTGGAGAGCTGTCAGTAGCACTAATAAGTT
TAACCATGCAGCTGCAATGGAAAAGTTGAAAAAAGAGAAGTTAGAGGCCT
GGCAGTGGTTAGAGAGAGAACTTGTTGGGTTTACTTGGTCAAGACATGAG
TATGACAAGAATTGCAAAGTGGATTGTACAAGTAATAACACTTCGAACTG
CTTCAACAACTGGATCTTACCCCATAGAGAGAAGCCTTGTCTGACTACGC
TTGAAGATATCCGATACATGTTTATAACATTATTCACAGAAAGAAGAAAA
GAAGCACAATCTTGGTCCAATATTCCACCTCGAGTTAAAAACAAGAGTTA
TTATCCAGCGAGAAGGTTCATCGTTGATCTGGTGAGCAGGTCCTACAACT
GTGGTCATTGGGAACTATCCGGACTCCCCTATGCTCATGTTATGGCTGCA
ATTAGTCATGCAAGACACACGGTAAAAGAGTACTGGCCAAAATACTTCAC
GAAACAAGCATATTTGAACACTTATGTTGTGATGTTTCAACCAATTCCTG
ATAAGGTTACTTGGGACCCATGTGATAGACCAAAACTTTCTCCACCTGAG
ATTACTAAGAAGATTGGAAGACCGAAGAATTCAAGGAAGAGGGCAGCCAC
TGAGCCAGTGAAAAAAAACAGATCATTCTATGTCTGTTGTTCCTTTTGCG
GTGGGATAAACCACAATGTCTGA back to topprotein sequence of Cs6g12530.1 >Cs6g12530.1_Hzau_Valencia_v2.0-protein ID=Cs6g12530.1_Hzau_Valencia_v2.0-protein; Name=Cs6g12530.1; organism=Citrus sinensis; type=polypeptide; length=691bp
MLPIQLHIIYKGKKHCKWSIEPNEYSLLQLKNEVVKITSQNGLTTPESVQ
LLVTSLRNNVEVIVDIDAMLRIMFMVHDSLQVLVFKVTVLPTLRPDLELG
GVIQSLLHALGVPLSAEQVAWVNESENEPPSRLVGIHGPQINLAENVGCE
TDVNEDESPSKSKGRDEPQIVKNENVQQNVDDNDDDDWLSDFNKEFTTDG
SRINHQNIAEDAEVMDDGGSSSDDESIDANPQLLANTSYSDFDLGITQLK
DYIEVHMYKPRPDGKHKLRLGDVFDDVDHFRKVLGEVMVDKNFEIAKVYN
DCMRFYGKYKIDGCSCKWIAEKIKSKVVVDPHVKISVLHEFMQETFGVRI
GNLKLYRARERARTDIHGDHARGYEDLFQYAAVILKYDPAQRNALYNGCR
PYIGLDGCHLKSKYGGVLLAAIRSPFAVIGKRLLGAIRNTQLTAFYRSSW
SYFENLFWRAVSSTNKFNHAAAMEKLKKEKLEAWQWLERELVGFTWSRHE
YDKNCKVDCTSNNTSNCFNNWILPHREKPCLTTLEDIRYMFITLFTERRK
EAQSWSNIPPRVKNKSYYPARRFIVDLVSRSYNCGHWELSGLPYAHVMAA
ISHARHTVKEYWPKYFTKQAYLNTYVVMFQPIPDKVTWDPCDRPKLSPPE
ITKKIGRPKNSRKRAATEPVKKNRSFYVCCSFCGGINHNV* back to topprotein sequence of Cs6g12530.1_Hzau_Valencia_v1.0 >Cs6g12530.1_Hzau_Valencia_v1.0 ID=Cs6g12530.1_Hzau_Valencia_v1.0; Name=Cs6g12530.1_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=691bp
MLPIQLHIIYKGKKHCKWSIEPNEYSLLQLKNEVVKITSQNGLTTPESVQ
LLVTSLRNNVEVIVDIDAMLRIMFMVHDSLQVLVFKVTVLPTLRPDLELG
GVIQSLLHALGVPLSAEQVAWVNESENEPPSRLVGIHGPQINLAENVGCE
TDVNEDESPSKSKGRDEPQIVKNENVQQNVDDNDDDDWLSDFNKEFTTDG
SRINHQNIAEDAEVMDDGGSSSDDESIDANPQLLANTSYSDFDLGITQLK
DYIEVHMYKPRPDGKHKLRLGDVFDDVDHFRKVLGEVMVDKNFEIAKVYN
DCMRFYGKYKIDGCSCKWIAEKIKSKVVVDPHVKISVLHEFMQETFGVRI
GNLKLYRARERARTDIHGDHARGYEDLFQYAAVILKYDPAQRNALYNGCR
PYIGLDGCHLKSKYGGVLLAAIRSPFAVIGKRLLGAIRNTQLTAFYRSSW
SYFENLFWRAVSSTNKFNHAAAMEKLKKEKLEAWQWLERELVGFTWSRHE
YDKNCKVDCTSNNTSNCFNNWILPHREKPCLTTLEDIRYMFITLFTERRK
EAQSWSNIPPRVKNKSYYPARRFIVDLVSRSYNCGHWELSGLPYAHVMAA
ISHARHTVKEYWPKYFTKQAYLNTYVVMFQPIPDKVTWDPCDRPKLSPPE
ITKKIGRPKNSRKRAATEPVKKNRSFYVCCSFCGGINHNV* back to topmRNA from alignment at chr6:14161077..14163908+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. > ID=; Name=; organism= ; type=; length=2832bp; location=Sequence derived from: chr6:14161077..14163908+ (Citrus sinensis
ATGTTACCAATACAACTACATATAATCTACAAAGGCAAAAAACATTGTAA
ATGGTCGATTGAACCAAATGAATACAGTCTGCTGCAGCTGAAGAATGAGG
TGGTAAAGATTACAAGTCAAAACGGGTTAACCACTCCTGAAAGTGTGCAA
TTACTTGTCACCAGCCTAAGGAATAATGTGGAAGTTATTGTAGATATTGA
TGCAATGTTGCGGATTATGTTCATGGTACATGACTCATTACAAGTGCTAG
TATTTAAAGTCACTGTGTTGCCAACCCTACGTCCTGATTTAGAACTTGGT
GGGGTGATACAATCCCTGCTACATGCCTTAGGAGTTCCGCTATCTGCAGA
GCAAGTTGCATGGGTAAATGAAAGTGAAAATGAACCACCATCTAGGCTTG
TAGGCATACATGGGCCACAAATAAACCTTGCTGAGAATGTTGGGTGTGAG
ACTGATGTTAATGAAGATGAATCACCTTCTAAGAGTAAAGGCAGAGACGA
ACCACAAATTGTTAAGAATGAGAATGTTCAGCAGAATGTTGATGACAACG
ACGATGATGATTGGTTGTCAGATTTTAACAAAGAATTTACTACTGATGGT
AGTCGTATAAATCACCAAAACATAGCTGAGGATGCAGAAGTTATGGATGA
TGGGGGATCTAGCTCTGACGATGAATCAATTGATGCAAATCCTCAATTAT
TGGCAAATACATCTTACTCAGATTTTGATTTGGGCATTACTCAATTAAAA
GATTATATTGAAGTGCATATGTATAAGCCAAGGCCTGATGGTAAGCATAA
ACTGAGGTTAGGAGATGTGTTTGATGATGTTGACCACTTTAGGAAGGTGT
TGGGTGAAGTGATGGTGGATAAAAACTTTGAAATTGCAAAGGTGTACAAT
GATTGTATGAGATTTTACGGTAAATACAAGATTGATGGCTGTTCATGGTA
TGTGGTGGGAGGTAAAATCAGAGGTAATGGTGGATTTGTAATTAAACAGT
TACAGAATAAACATGATTACAGATAGACCGAAATGTCTTTGAATGTGACC
AGCAAATGGATAGCAGAGAAAATAAAGAGCAAAGTCGTTGTGGATCCTCA
TGTGAAGATTTCTGTTCTTCACGAGTTTATGCAAGAGACGTTTGGTGTGA
GGATAGGGAATTTAAAGTTGTATAGAGCCAGAGAGAGGGCAAGGACAGAC
ATTCATGGAGACCATGCAAGGGGCTATGAGGATCTCTTTCAATATGCTGC
GGTGATTCTGAAGTATGATCCAGGTGTAATTTGCAAAGTACTTTGCAATG
CAGTAAATATGCCAGAAAAAGTGTTATTTCAGAGATTTTTTATGGCATTT
CCAGCCCAAAGAAATGCACTTTATAATGGTTGTAGGCCATACATTGGGTT
GGACGGATGTCATTTGAAATCAAAGTATGGTGGAGTTCTATTAGCTGCTG
TAAGTATGGATGCTAATAATGGAATGGTTCCATTAACAATAGCAGTGTGT
GAGATAGAGAACACTGAAACTTGGACATGATTTTTAAAAATTCTACATTC
GTATTTCGATAATGGATCAGATCAGATCACCTTTTGCAGTGATAGGCAAA
AGATTGCTGGGAGCAATTAGGAATACACAGTTGACTGCATTTTATAGGTC
ATGTGCTAGACATATATATTCGAACTTCTCTAAAGATCATCCTGGAGTTA
CTTTGAGAATCTGTTTTGGAGAGCTGTCAGTAGCACTAATAAGTTTAACC
ATGCAGCTGCAATGGAAAAGTTGAAAAAAGAGAAGTTAGAGGCCTGGCAG
TGGTTAGAGAGAGAACTTGTTGGGTTTACTTGGTCAAGACATGAGTATGA
CAAGAATTGCAAAGTGGATTGTACAAGTAATAACACTTCGAACTGCTTCA
ACAACTGGATCTTACCCCATAGAGAGAAGCCTTGTCTGACTACGCTTGAA
GATATCCGATACATGTTTATAACATTATTCACAGAAAGAAGAAAAGAAGC
ACAATCTTGGTCCAATATTCCACCTCGAGTGAAAAAGAATTAAATTATGC
TTATGAGACCGGAAGCAAAATGACTGCAATGGCTTCTGGTGATCTTCACT
TTTAGGTATAAATCTGAAATATTTTTGTTTTGAAATATATTTTTATATAG
CTGAACTATTACTGTATCGAGTTTAGAGTAAAACACATATTTATAATTAC
TTGAAATTACAATCTGAATTCACTTTGAAAATTCTAGTAGAGAAAGACTT
ATGTGTATAATATATGTTTTTTTATTTACACTCCATTTTGCGTAATCTTC
TTATCATTGCTTTAGAGTTAACTAGCAATGATAATTCTTTATATTACACA
ATAAAAGAGCAAGTTCTCTACAATTTTAGAAATTTAGTTATATAACATTA
TTTTTTCCTATATGCTTTTAATTATTGTGCTATTGCTCTCAGGTTAAAAA
CAAGAGTTATTATCCAGCGAGAAGGTTCATCGTTGATCTGGTGAGCAGGT
CCTACAACTGTGGTCATTGGGAACTATCCGGACTCCCCTATGCTCATGTT
ATGGCTGCAATTAGTCATGCAAGACACACGGTAAAAGAGTACTGGCCAAA
ATACTTCACGAAACAAGCATATTTGAACACTTATGTTGTGATGTTTCAAC
CAATTCCTGATAAGGTTACTTGGGACCCATGTGATAGACCAAAACTTTCT
CCACCTGAGATTACTAAGAAGATTGGAAGACCGAAGAATTCAAGGAAGAG
GGCAGCCACTGAGCCAGTGAAAAAAAACAGATCATTCTATGTCTGTTGTT
CCTTTTGCGGTGGGATAAACCACAATGTCTGA back to topCoding sequence (CDS) from alignment at chr6:14161077..14163908+ >Cs6g12530.1_Hzau_Valencia_v1.0 ID=Cs6g12530.1_Hzau_Valencia_v1.0; Name=Cs6g12530.1; organism=Citrus sinensis; type=CDS; length=2073bp; location=Sequence derived from: chr6:14161077..14163908+ (Citrus sinensis
ATGTTACCAATACAACTACATATAATCTACAAAGGCAAAAAACATTGTAA
ATGGTCGATTGAACCAAATGAATACAGTCTGCTGCAGCTGAAGAATGAGG
TGGTAAAGATTACAAGTCAAAACGGGTTAACCACTCCTGAAAGTGTGCAA
TTACTTGTCACCAGCCTAAGGAATAATGTGGAAGTTATTGTAGATATTGA
TGCAATGTTGCGGATTATGTTCATGGTACATGACTCATTACAAGTGCTAG
TATTTAAAGTCACTGTGTTGCCAACCCTACGTCCTGATTTAGAACTTGGT
GGGGTGATACAATCCCTGCTACATGCCTTAGGAGTTCCGCTATCTGCAGA
GCAAGTTGCATGGGTAAATGAAAGTGAAAATGAACCACCATCTAGGCTTG
TAGGCATACATGGGCCACAAATAAACCTTGCTGAGAATGTTGGGTGTGAG
ACTGATGTTAATGAAGATGAATCACCTTCTAAGAGTAAAGGCAGAGACGA
ACCACAAATTGTTAAGAATGAGAATGTTCAGCAGAATGTTGATGACAACG
ACGATGATGATTGGTTGTCAGATTTTAACAAAGAATTTACTACTGATGGT
AGTCGTATAAATCACCAAAACATAGCTGAGGATGCAGAAGTTATGGATGA
TGGGGGATCTAGCTCTGACGATGAATCAATTGATGCAAATCCTCAATTAT
TGGCAAATACATCTTACTCAGATTTTGATTTGGGCATTACTCAATTAAAA
GATTATATTGAAGTGCATATGTATAAGCCAAGGCCTGATGGTAAGCATAA
ACTGAGGTTAGGAGATGTGTTTGATGATGTTGACCACTTTAGGAAGGTGT
TGGGTGAAGTGATGGTGGATAAAAACTTTGAAATTGCAAAGGTGTACAAT
GATTGTATGAGATTTTACGGTAAATACAAGATTGATGGCTGTTCATGCAA
ATGGATAGCAGAGAAAATAAAGAGCAAAGTCGTTGTGGATCCTCATGTGA
AGATTTCTGTTCTTCACGAGTTTATGCAAGAGACGTTTGGTGTGAGGATA
GGGAATTTAAAGTTGTATAGAGCCAGAGAGAGGGCAAGGACAGACATTCA
TGGAGACCATGCAAGGGGCTATGAGGATCTCTTTCAATATGCTGCGGTGA
TTCTGAAGTATGATCCAGCCCAAAGAAATGCACTTTATAATGGTTGTAGG
CCATACATTGGGTTGGACGGATGTCATTTGAAATCAAAGTATGGTGGAGT
TCTATTAGCTGCTATCAGATCACCTTTTGCAGTGATAGGCAAAAGATTGC
TGGGAGCAATTAGGAATACACAGTTGACTGCATTTTATAGATCATCCTGG
AGTTACTTTGAGAATCTGTTTTGGAGAGCTGTCAGTAGCACTAATAAGTT
TAACCATGCAGCTGCAATGGAAAAGTTGAAAAAAGAGAAGTTAGAGGCCT
GGCAGTGGTTAGAGAGAGAACTTGTTGGGTTTACTTGGTCAAGACATGAG
TATGACAAGAATTGCAAAGTGGATTGTACAAGTAATAACACTTCGAACTG
CTTCAACAACTGGATCTTACCCCATAGAGAGAAGCCTTGTCTGACTACGC
TTGAAGATATCCGATACATGTTTATAACATTATTCACAGAAAGAAGAAAA
GAAGCACAATCTTGGTCCAATATTCCACCTCGAGTTAAAAACAAGAGTTA
TTATCCAGCGAGAAGGTTCATCGTTGATCTGGTGAGCAGGTCCTACAACT
GTGGTCATTGGGAACTATCCGGACTCCCCTATGCTCATGTTATGGCTGCA
ATTAGTCATGCAAGACACACGGTAAAAGAGTACTGGCCAAAATACTTCAC
GAAACAAGCATATTTGAACACTTATGTTGTGATGTTTCAACCAATTCCTG
ATAAGGTTACTTGGGACCCATGTGATAGACCAAAACTTTCTCCACCTGAG
ATTACTAAGAAGATTGGAAGACCGAAGAATTCAAGGAAGAGGGCAGCCAC
TGAGCCAGTGAAAAAAAACAGATCATTCTATGTCTGTTGTTCCTTTTGCG
GTGGGATAAACCACAATGTCTGA back to top
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