Transcript Overview
Name Cs6g12570.2 Unique Name Cs6g12570.2_Hzau_Valencia_v1.0 Type mRNA Organism Citrus sinensis (Sweet orange) Sequence length 2532
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Cs6g12570.2 Cs6g12570.2_Hzau_Valencia_v2.0-protein Citrus sinensis polypeptide Cs6g12570.2_Hzau_Valencia_v1.0 Cs6g12570.2_Hzau_Valencia_v1.0 Citrus sinensis polypeptide
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g12570.2.utr3.1 Cs6g12570.2.utr3.1_Hzau_Valencia_v1.0 Citrus sinensis three_prime_UTR
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g12570.2.cds.2 Cs6g12570.2.cds.2_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g12570.2.cds.1 Cs6g12570.2.cds.1_Hzau_Valencia_v1.0 Citrus sinensis CDS
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g12570.2.exon.2 Cs6g12570.2.exon.2_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g12570.2.exon.1 Cs6g12570.2.exon.1_Hzau_Valencia_v1.0 Citrus sinensis exon
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g12570.2.utr5.1 Cs6g12570.2.utr5.1_Hzau_Valencia_v1.0 Citrus sinensis five_prime_UTR
Homology
BLAST of Cs6g12570.2 vs. DB:SwissProt
Match:
NHL10_ARATH (NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1)
HSP 1 Score: 75.485 bits (184), Expect = 4.503e-15
Identity = 50/155 (32.26%), Postives = 77/155 (49.68%), Query Frame = 1
Query: 196 ILGCALLIFWLVVRPRIPEFHLTSLSVSNF--STNQSQVTGNWDAAIEAYNPNKKMRVSYYDVVSGIYYDGNYLTRTPLPPFSQDTRERTPLSAKFS----VIDSYVERKVLDSINAERARGAVKFDFRLEAIAGFKYGGWRTRRRLVRVWCPDV 642
ILG A LIFWL+VRPR +FH+T S++ F ++ + + N + NPNK++ + Y + + YY+G + L PF Q + T L+ F VI + + + L NAER G + + FK G + RR +V C D+
Sbjct: 51 ILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTL---NAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDCDDL 202
BLAST of Cs6g12570.2 vs. DB:SwissProt
Match:
NHL26_ARATH (NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1)
HSP 1 Score: 54.6842 bits (130), Expect = 9.859e-8
Identity = 39/139 (28.06%), Postives = 65/139 (46.76%), Query Frame = 1
Query: 202 GCALLIF--WLVVRPRIPEFHLTSLSV--SNFSTNQSQ-VTGNWDAAIEAYNPNKKMRVSYYDVVSGIYYDGNYLT-RTPLPPFSQDTRERTPLSAKFSVIDSYVERKVLDSINAERARGAVKFDFRLEAIAGFKYGGW 600
G L+IF WL++ P PEF LT + N +T+ + + + + + NPNKK+ + Y ++ Y G +T LPPF Q E L+A + V + I+ ER+ G + +++ +K G W
Sbjct: 37 GLLLIIFLVWLILHPERPEFSLTEADIYSLNLTTSSTHLLNSSVQLTLFSKNPNKKVGIYYDKLLVYAAYRGQQITSEASLPPFYQSHEEINLLTAFLQGTELPVAQSFGYQISRERSTGKIIIGMKMDGKLRWKIGTW 175
BLAST of Cs6g12570.2 vs. DB:SwissProt
Match:
Y1816_ARATH (Uncharacterized protein At1g08160 OS=Arabidopsis thaliana OX=3702 GN=At1g08160 PE=2 SV=1)
HSP 1 Score: 54.299 bits (129), Expect = 1.238e-7
Identity = 30/144 (20.83%), Postives = 66/144 (45.83%), Query Frame = 1
Query: 217 IFWLVVRPRIPEFHLTSLSVSNFS--TNQSQVTGNWDAAIEAYNPNKKMRVSYYDVVSGIYYDGNYLTRTPLPPFSQDTRERTPLSAKFSVIDSYVERKVLDSINAERARGAVKFDFRLEAIAGFKYGGWRTRRRLVRVWCPDV 642
I +L +RP+ + + + SV F+ N + + I++YNP K + V Y+ + + + + PF Q + T + + + + + + AE+++G ++ + + A +K +R+RRR ++ C V
Sbjct: 57 ITYLTLRPKRLIYTVEAASVQEFAIGNNDDHINAKFSYVIKSYNPEKHVSVRYHSMRISTAHHNQSVAHKNISPFKQRPKNETRIETQLVSHNVALSKFNARDLRAEKSKGTIEMEVYITARVSYKTWIFRSRRRTLKAVCTPV 200
The following BLAST results are available for this feature:
BLAST of Cs6g12570.2 vs. DB:SwissProt
Analysis Date: 2018-06-07 (
C. sinensis v2.0, HZAU CDS )
Total hits: 3
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 Expect = 4.50e-15 / Id = 32.26 Expect = 9.86e-8 / Id = 28.06 Expect = 1.24e-7 / Id = 20.83 Sequence NHL10_ARATH NHL26_ARATH Y1816_ARATH
Match Name E-value Identity Description
NHL10_ARATH 4.503e-15 32.26 NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana ... [more] NHL26_ARATH 9.859e-8 28.06 NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana ... [more] Y1816_ARATH 1.238e-7 20.83 Uncharacterized protein At1g08160 OS=Arabidopsis t... [more]
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InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 Score = Score = Score = Sequence mobidb-lite PTHR31852:SF2 PTHR31852
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..30 None No IPR available PANTHER PTHR31852:SF2 SUBFAMILY NOT NAMED coord: 23..235 None No IPR available PANTHER PTHR31852 FAMILY NOT NAMED coord: 23..235
Sequences
The
following sequences are available for this feature:
mRNA sequence
>Cs6g12570.2_Hzau_Valencia_v1.0 ID=Cs6g12570.2_Hzau_Valencia_v1.0; Name=Cs6g12570.2; organism=Citrus sinensis; type=mRNA; length=2532bp back to top protein sequence of Cs6g12570.2
>Cs6g12570.2_Hzau_Valencia_v2.0-protein ID=Cs6g12570.2_Hzau_Valencia_v2.0-protein; Name=Cs6g12570.2; organism=Citrus sinensis; type=polypeptide; length=254bp back to top protein sequence of Cs6g12570.2_Hzau_Valencia_v1.0
>Cs6g12570.2_Hzau_Valencia_v1.0 ID=Cs6g12570.2_Hzau_Valencia_v1.0; Name=Cs6g12570.2_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=254bp back to top mRNA from alignment at chr6:14182192..14186250-
Legend: exon five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=4059bp; location=Sequence derived from: chr6:14182192..14186250- (Citrus sinensisCGAGAAGCAGCCGAGTTTTTATCCCTTTCCTTCGCTTTCAACTTTTCCCA
ATACGCGTATCAAAAAGAATAAAAAATAAAAAAACTTTTCCCCACACGGA
GTCGTGCACTGATCACTACTAACACAACACTTTCGAGCACCTCTCTAAAT
TCTCTCACTCTCTGTCCCTTTTCTCTCTTCGATTCACACACAAGTCAA AT
GGAAAATTCCAGACCAGCAACCGGCTACCCGGCCCCGACTCACAACGGCT
ACCCGCCCCCGAACACCGCCTACCCGTACTCGGCCGCACCGCCGCAGTCC
CAGCCCTACAGTTACCCTCCCTATTACCAACCTCCCACCCGTCGCAACAA
CCTGCTCCGTCCCTTGGTCGTCGCCGCAGTCGCCGTCACCGTTATCTTGG
GCTGCGCCCTCCTCATCTTCTGGCTTGTCGTCCGCCCCCGCATCCCGGAG
TTCCACCTCACTTCCCTCTCAGTCTCCAATTTCTCAACCAACCAGTCCCA
AGTCACCGGCAACTGGGACGCCGCAATCGAGGCTTACAACCCTAACAAGA
AAATGAGGGTCTCCTACTACGACGTCGTTTCGGGGATTTACTACGACGGT
AACTACTTAACCCGGACGCCACTCCCTCCTTTTAGTCAGGACACTCGGGA
GAGGACGCCGTTGAGCGCCAAGTTCTCGGTGATTGACTCGTATGTTGAGC
GGAAAGTTTTGGATTCTATAAATGCCGAGAGGGCAAGGGGGGCCGTTAAA
TTCGATTTCAGATTGGAGGCTATTGCCGGGTTCAAGTACGGTGGCTGGAG
GACCAGGAGGAGGCTGGTTAGGGTTTGGTGTCCTGACGTGCCAGTTAACG
TTTCGAGTAAGGGATCGGGAAGCTTGGTGGGTGGTGCCAGGAAATGCAGG
GTCCTTTTGGATTATTCTGGGAA
AAATTTGATGCTATGTTTACTTGGACCATTTCCTTGA TTAAGAGTGGTGA
TTCGCTGCTGATTGCGGCTGATAATACTCCTGCCTAGCATTGCTTCATCG
TTCAGTAGGTGTTCCTGCATATATTGAAGAGATCTGCCTATTTTCTGTAT
TTTATTTATTTATTTACTTTCTGAATGTCATAAATTGCCAACTGCCCTTT
CAATGCGCCAAGGCGCTTAACACTTCAACTCATTCTTTCATGTTTCATTT
GGTAATGAATGATGATGATATCTTACTAGATTTACTTCCATTTGAAGAAA
CAACTCCTTTTTTTATTTATTTATAAATCTGCCCTTCCTATACGCTTTTG
CTTGCAAGTGTTTGTTTCTTTTCCCCTACAATGTTCAGTGCTCTTTGCCT
TCACGTTCTTCCACCCTTGTATAATTTCAAATATTCTTCGATTCATCATT
GCTTTCAGTTAAGATACCATTCATTCGTTTTGTTAACTCCATTGATTTTT
CCCTTTGGTCAGCAAGTTCTTTTGGTATATGCATTCTTTTTCTGTAAAAA
GCTTTCTGTACTCATCGAAAATCTAAGCCCTGCTATCATTAAGATAACTG
TATAGTGTCAACTTTCTGTCATCAGAAACAGAAGTAAAAATATACTGTAA
ACTCGTTAAGGTCATAAGGTGTGTGTACTTTTTGTCATGCAATTCTGATC
CATGATGTTGTTCGAGTGTTGAGCCAGTCCAAATGTGTGATTTAAGACGT
TACAACCTGTATTCTTGTGCTATTTTATAAGATTTTTTTTTTCCCTTTTC
CCCCTGACAGATTGGTCTCATGAAGTGGCAGGTGAGAGTAAGATGGGGGA
ATTTTTATGAATATAATTATCAATCATTCATTATTATTTGGAGAATCTAA
TCAAGCAAGTACATCAAATTGTCTTGAGTACAACCATTTTTCTTCTTTTA
GTCTATAATCTTAACCCAAAATGTGGTAACATCTACTTTCTGTTCGTCTT
TGTTAACCTTCGAAAAACCTTAGAACCATGAGGTGCCTACGGGTCTAGTA
GTGCTGGAGGGGAGACTCTGCTGGAAAACGAATTTTATGAGCTTAAATTA
ATGTGTCTTATTATTTTTAGCTTTTTGTATTTAGGAATGTGTTCTTTATA
TCTGTTGCATCGTATTTGTGGTATCATTATCACTGTTTCCATTGATTTCT
GGAAAATAATTGCAGTGAGTAAGGTTTGGTAGTATTTTACGACTGCTATT
GCTGGTCTAAATATGTTCGAGTGCCCTTTTTTATTCCATTATTTTTCAAT
GGCTCAATCTTAGGCGTATTTGTGAATAATCATTTTTACTTTTGATATGC
TCTATTATGTCTAATAGTAGGTTGATATATTGTTTGGTGCCGACTGAGGC
TGATGGAGCATCAGTTGGCTTTACACTGTCAAAAGTGTTTTTGGTGGGAG
AGAACCAACTTTTAACTTTTGTCTCTAGGTAGCAGTGAACTTTTGGGCAA
TCTTCTGATGTTCTTCACAACTTTAAGTCTCTCGAAGCCGCGGGAACAAT
GCTGTAGGGTGTTAGTTATATGGGTGGCGCATACATTTATGCTAGCTTGA
GAAATGGTA back to top Coding sequence (CDS) from alignment at chr6:14182192..14186250-
>Cs6g12570.2_Hzau_Valencia_v1.0 ID=Cs6g12570.2_Hzau_Valencia_v1.0; Name=Cs6g12570.2; organism=Citrus sinensis; type=CDS; length=762bp; location=Sequence derived from: chr6:14182192..14186250- (Citrus sinensis back to top
