Cs6g17530.1, Cs6g17530.1_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Cs6g17530.1 vs. DB:SwissProt
Match: GAI_GOSHI (DELLA protein GAI OS=Gossypium hirsutum OX=3635 GN=GAI PE=2 SV=1) HSP 1 Score: 814.298 bits (2102), Expect = 0.000e+0 Identity = 414/567 (73.02%), Postives = 460/567 (81.13%), Query Frame = 1 Query: 1 MKRDHQHXXXXXXXXXXXXXXXXTGNANKAKMWEEEQDTGGMD-ELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSMLEGLNNTGFDSQARPIQDPAESSTVNSILGQQTSNQSRIFNDDSEYDLRAIPGSAAYP--QPDSETENNRNKRMRVEXXXXXXXXXXPTELARPVV-VDSQETGVQLVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYPQDCLDSSYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSEVYLGRQICNIVACDGTDRNERHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIA 1689 MKRDHQ G GS + ++ K K+WEE+ D GGMD ELL VLGYKVRSS+MADVAQKLE LE VMGTAQEDGIS L DTVH+NPSD+SGWVQ++L N + T+ FNDDSEYDLRAIPG AAYP + D E R KR + E +++++ + RPVV +DSQE GV+LVHTLMACAEA+QQ+NLK+ADALVKHIGLLA++Q GAMRKVATYFAEALARRIYRI+P D LD SYND LQ+ FYETCPYLKFAHFTANQAILEAF+ A+RVHVIDF LKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLA+ IG+EFEFRGFV NSLADLEP+MLDIRPPE+E VAVN+VFELH LLARPGGIEKVVSSIKAM+PKI+T+VEQEANHN PVFLDRFTEALHYYS+LFDSLEGSG+ P SQD MSE+YLGRQICN+VAC+G DR ERHE LTQWRTR+ +AG PVHLGSNAYKQASMLLALFA GDGYRVEENNGCLMLGWHTRPLIA Sbjct: 1 MKRDHQEISGSGSNPAE-------SSSIKGKLWEEDPDAGGMDDELLAVLGYKVRSSDMADVAQKLEMLEKVMGTAQEDGISQLG-DTVHFNPSDLSGWVQNLLIEFNGS-------------------------TTTPDPNFNDDSEYDLRAIPGVAAYPPVKSDPGLEITR-KRAKTESSSSSS-----STTTRPVVLIDSQEAGVRLVHTLMACAEAVQQDNLKLADALVKHIGLLASSQTGAMRKVATYFAEALARRIYRIFPPDSLDPSYNDKLQIPFYETCPYLKFAHFTANQAILEAFSMASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAERIGIEFEFRGFVANSLADLEPEMLDIRPPEIEVVAVNAVFELHPLLARPGGIEKVVSSIKAMKPKIVTVVEQEANHNGPVFLDRFTEALHYYSTLFDSLEGSGVAPASQDLAMSELYLGRQICNVVACEGMDRVERHEPLTQWRTRMETAGVSPVHLGSNAYKQASMLLALFASGDGYRVEENNGCLMLGWHTRPLIA 528
BLAST of Cs6g17530.1 vs. DB:SwissProt
Match: GAI_SOLLC (DELLA protein GAI OS=Solanum lycopersicum OX=4081 GN=GAI PE=2 SV=1) HSP 1 Score: 778.474 bits (2009), Expect = 0.000e+0 Identity = 390/563 (69.27%), Postives = 458/563 (81.35%), Query Frame = 1 Query: 76 NANKAKMWEEEQDT---GGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSMLEGLNNTGFD--SQARPIQDPAESSTVNSILGQQTSNQSRIFNDDSEYDLRAIPGSAAYPQPDSETENNRNKRMRVEXXXXXXXXXXPTELARPVV-VDSQETGVQLVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYPQDCLDSSYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEG---------SGLTPP----SQDQVMSEVYLGRQICNIVACDGTDRNERHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQL 1707 ++ K+K+WEE+++ GMDELL VLGYKV+SS+MADVAQKLEQLEM MGT EDGI+HL+TDTVH NPSD++GWVQSML ++ T FD +Q + S+ + I Q S I +DD LRAIPG A + + N R++ +T +++ + + RPVV VDSQETGV+LVHTLMACAEA+QQENL +AD LV+HIG+LA +Q+GAMRKVATYFAEALARRIY+IYPQD ++SSY D+LQMHFYETCPYLKFAHFTANQAILEAF N+VHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLA+TIGVEFEFRGFV NSLADL+ +LDIRP E E VA+NSVFELHRLL+RPG IEKV++SIK + PKI+T+VEQEANHN+ VF+DRF EALHYYS++FDSLE +G+ P +QD VMSEVYLGRQICN+VAC+G+DR ERHETL QWR R+ S+GF+PVHLGSNA+KQASMLLALFAGGDGYRVEEN+GCLMLGWHTRPLIATSAW+L Sbjct: 22 SSGKSKIWEEDEEEKPDAGMDELLAVLGYKVKSSDMADVAQKLEQLEMAMGTTMEDGITHLSTDTVHKNPSDMAGWVQSMLSSIS-TNFDMCNQENDVLVSGCGSSSSIIDFSQNHRTSTISDDD----LRAIPGGAVF----NSDSNKRHRSTTSSFSTTSSSMVTDSSATRPVVLVDSQETGVRLVHTLMACAEAVQQENLTLADQLVRHIGILAVSQSGAMRKVATYFAEALARRIYKIYPQDSMESSYTDVLQMHFYETCPYLKFAHFTANQAILEAFTGCNKVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAETIGVEFEFRGFVANSLADLDATILDIRPSETEAVAINSVFELHRLLSRPGAIEKVLNSIKQINPKIVTLVEQEANHNAGVFIDRFNEALHYYSTMFDSLESSGSSSSASPTGILPQPPVNNQDLVMSEVYLGRQICNVVACEGSDRVERHETLNQWRVRMNSSGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENDGCLMLGWHTRPLIATSAWKL 575
BLAST of Cs6g17530.1 vs. DB:SwissProt
Match: GAI1_VITVI (DELLA protein GAI1 OS=Vitis vinifera OX=29760 GN=GAI1 PE=2 SV=1) HSP 1 Score: 768.459 bits (1983), Expect = 0.000e+0 Identity = 388/592 (65.54%), Postives = 457/592 (77.20%), Query Frame = 1 Query: 1 MKRDHQHXXXXXXXXXXXXXXXXTGNANKAKMWEEE-QDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSMLEGLN---NTGFDSQARPIQDPAESSTVNSILGQQTSNQSRIFNDDS-EYDLRAIPGSAAYPQPDSETE--------NNRNKRMRVEXXXXXXXXXX-------PTELARPVV-VDSQETGVQLVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYPQDCLDSSYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTP-PSQDQVMSEVYLGRQICNIVACDGTDRNERHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLA 1710 MKR++ H + T K KMW+ + Q GMDELL VLGY V++S+MA+VAQKLEQLE V+ AQEDG+SHLA++TVHYNPSD+S W+ SML N N D+ P P + + ++ Q + IF+ S +YDL+AIPG A Y + + NKR++ + + PTE ARPVV VDSQETG++LVHTLMACAEA+QQENLK+A+ALVK IG LA +QAGAMRKVATYFAE LARRIYR+YP LDSS++DILQMHFYETCPYLKFAHFTANQAILEAF RVHVIDFS+KQGMQWPALMQALALRPGGPP+FRLTGIGPP DNTD L +VGWKLAQLA+TI VEFE+RGFV NSLADL+ ML++R + E+VAVNSVFELH LLARPGGIE+V+S++K M+P I+TIVEQEANHN PVFLDRFTE+LHYYS+LFDSLEG G++P +QD++MSEVYLG+QICN+VAC+G +R ERHETL QWR RLGSAGF+PV+LGSNA+KQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLA Sbjct: 1 MKREYHHPHHPTCS---------TSPTGKGKMWDADPQQDAGMDELLAVLGYNVKASDMAEVAQKLEQLEEVIVNAQEDGLSHLASETVHYNPSDLSNWLGSMLSEFNPTPNCALDNPFLPPISPLDYTNCST----QPKQEPSIFDSPSLDYDLKAIPGKALYSHIEQPPQQPPAPPLYQRDNKRLKPTTSATANSVSSVIGGWGVPTESARPVVLVDSQETGIRLVHTLMACAEAVQQENLKLAEALVKQIGFLAVSQAGAMRKVATYFAEGLARRIYRLYPDKPLDSSFSDILQMHFYETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMKQGMQWPALMQALALRPGGPPSFRLTGIGPPSTDNTDHLHEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLELR--DGESVAVNSVFELHSLLARPGGIERVLSAVKDMKPDIVTIVEQEANHNGPVFLDRFTESLHYYSTLFDSLEGCGVSPVNTQDKLMSEVYLGQQICNVVACEGPERVERHETLAQWRARLGSAGFDPVNLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLA 577
BLAST of Cs6g17530.1 vs. DB:SwissProt
Match: GAIP_CUCMA (DELLA protein GAIP OS=Cucurbita maxima OX=3661 GN=GAIP PE=2 SV=1) HSP 1 Score: 716.457 bits (1848), Expect = 0.000e+0 Identity = 369/560 (65.89%), Postives = 441/560 (78.75%), Query Frame = 1 Query: 76 NANKAKMWEEE-QDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSMLEGLN---NTGFDSQARPIQDPAESSTVNSI-LGQQTSNQSRIFNDDS--EYDLRAIPGSAAYPQPDSETENNRNKRMRVEXXXXXXXXXXPTELA-RPVV-VDSQETGVQLVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYPQDCLDSSYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSEVYLGRQICNIVACDGTDRNERHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLAKSTLVS 1728 N KAK+WEEE Q GGMDELL VLGYKV+SS+MA+VAQKLEQLE M Q+ G+SHLA DTVHYNPSD+S WV+SML L+ + D + PAESST+ ++ Q SRIF + S +YDL+AI SA Y S E+ R K + + +T+ I + A RPVV VDSQE G+QLVH LM CAEA+QQ NL +A+ALVK I LA +QAGAMRKVAT+FAEALARRIYR+ P++ LD S D+LQMHFYE+CPYLKFAHFTANQAILEAF RVHVIDFS+ QG+QWPAL+QALALRP GPP FRLTGIGPP PDN+D LQ VGWKL + A+T+ VEFE+RGFV NSLADL+ ML++RP EVE+V VNSVFELH+LLARPG IEKV+S +K M+P+I+T+VEQEANHN PVF++RFTE+LHYYS+LFDSLE S P SQD++MSE+YLG+QICN+VAC+G DR ERHETLTQWRTRL SAGF+P+HLGSNA+KQAS+LLALF G+GYRVEEN G LMLGWHTRPLIATSAW+ + +V+ Sbjct: 28 NTGKAKLWEEEVQLDGGMDELLAVLGYKVKSSDMAEVAQKLEQLEEAMCQVQDTGLSHLAFDTVHYNPSDLSTWVESMLTELHPPPTSHLDDSS--FLAPAESSTIANVDYEPQLQTSSRIFEESSSSDYDLKAITDSAIY----SPRESKRLKASESDTDVFSTSAIGASNFATRPVVLVDSQENGIQLVHALMVCAEAVQQNNLNLAEALVKRIDYLAVSQAGAMRKVATFFAEALARRIYRLCPENPLDRSVLDMLQMHFYESCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGIQWPALIQALALRPSGPPTFRLTGIGPPAPDNSDYLQDVGWKLVKFAETLHVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHQLLARPGAIEKVLSVVKQMKPEIVTVVEQEANHNGPVFVERFTESLHYYSTLFDSLECS---PNSQDKMMSEMYLGKQICNVVACEGADRVERHETLTQWRTRLSSAGFDPIHLGSNAFKQASILLALFGSGEGYRVEENEGSLMLGWHTRPLIATSAWKPGNNPVVA 578
BLAST of Cs6g17530.1 vs. DB:SwissProt
Match: GAIPB_CUCMA (DELLA protein GAIP-B OS=Cucurbita maxima OX=3661 GN=GAIPB PE=2 SV=1) HSP 1 Score: 716.457 bits (1848), Expect = 0.000e+0 Identity = 369/564 (65.43%), Postives = 438/564 (77.66%), Query Frame = 1 Query: 76 NANKAKMWEEE-QDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSMLEGLNNTGFDSQARPIQ-------DPAESSTVNSI-LGQQTSNQSRIFNDDS--EYDLRAIPGSAAYPQPDSETENNRNKRMRVEXXXXXXXXX--XPTELARPVV-VDSQETGVQLVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYPQDCLDSSYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSEVYLGRQICNIVACDGTDRNERHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLAKSTLV 1725 N KAK+WEE+ Q GGMDELL VLGYKV+SS+MA+VAQKLEQLE M Q+ G+SHLA DTVHYNPSD+S W++SM+ L+ Q P Q PAESST+ SI Q S IF + S +YDL+AI SA Y S EN R K + + + RP+V VDSQE G+QLVH LMACAEA+QQ NL +A+AL K IG LA +QAGAMRKVAT+FAEALARRIYR+ P++ LD S +D+LQ+HFYE+ PYLKFAHFTANQAILEAF RVHVIDFS+ QGMQWPAL+QALALRP GPPAFRLTGIGPP PDN+D LQ VGWKLA+L +TI VEFE+RGFV NSLADL+ ML++RP EVE+V VNSVFELH+LLARPG IEKV+S +K M+P+I+T+VEQEANHN PVF+DRFTE+LHYYS+LFDSLE S P +QD++MSE+YLG+QICN+VAC+G+DR E HETLTQWRTRL S+GFEP+HLGSNA+KQASMLLALF G+GYRVEENNG L LGWHTRPLI TSAW+L +++V Sbjct: 28 NTGKAKLWEEDAQLDGGMDELLAVLGYKVKSSDMAEVAQKLEQLEEAMCQVQDTGLSHLAFDTVHYNPSDLSTWLESMITELHPPPSFPQPHPSQMNDSSFLAPAESSTITSIDYDPQRQTSSLIFEESSSSDYDLKAITSSAIY----SPRENKRLKPSSESDSDLFSTSAIGASNSATRPIVLVDSQENGIQLVHALMACAEAVQQNNLNLAEALEKRIGYLAVSQAGAMRKVATFFAEALARRIYRVCPENPLDHSMSDMLQLHFYESSPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALLQALALRPSGPPAFRLTGIGPPAPDNSDYLQDVGWKLAKLVETINVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHKLLARPGAIEKVMSVVKQMKPEIMTVVEQEANHNGPVFMDRFTESLHYYSTLFDSLESS---PNNQDKMMSEMYLGKQICNVVACEGSDRVEWHETLTQWRTRLCSSGFEPIHLGSNAFKQASMLLALFGSGEGYRVEENNGSLTLGWHTRPLIVTSAWKLGNNSVV 584
BLAST of Cs6g17530.1 vs. DB:SwissProt
Match: GAI_ARATH (DELLA protein GAI OS=Arabidopsis thaliana OX=3702 GN=GAI PE=1 SV=1) HSP 1 Score: 709.138 bits (1829), Expect = 0.000e+0 Identity = 353/554 (63.72%), Postives = 413/554 (74.55%), Query Frame = 1 Query: 85 KAKMWEEEQDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSMLEGLNNTGFDSQARPIQDPAESSTVNSILGQQTSNQSRIFNDDSEYDLRAIPGSAAYPQ--PDSETENNR---------NKRMRVEXXXXXXXXXXPTELARPVVVDSQETGVQLVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYP-QDCLDSSYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSEVYLGRQICNIVACDGTDRNERHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLA 1710 K M EE D GMDELL VLGYKVRSSEMADVAQKLEQLE++M QED +S LAT+TVHYNP+++ W+ SML LN P S ++EYDL+AIPG A Q DS + +N+ NKR++ T T V+VDSQE GV+LVH L+ACAEA+Q+ENL VA+ALVK IG LA +Q GAMRKVATYFAEALARRIYR+ P Q +D S +D LQMHFYETCPYLKFAHFTANQAILEAF RVHVIDFS+ QG+QWPALMQALALRPGGPP FRLTGIGPP PDN D L +VG KLA LA+ I VEFE+RGFV N+LADL+ ML++RP E+E+VAVNSVFELH+LL RPG I+KV+ + ++P+I T+VEQE+NHNSP+FLDRFTE+LHYYS+LFDSLEG P QD+VMSEVYLG+QICN+VACDG DR ERHETL+QWR R GSAGF H+GSNA+KQASMLLALF GG+GYRVEE++GCLMLGWHTRPLIATSAW+L+ Sbjct: 14 KTMMMNEEDDGNGMDELLAVLGYKVRSSEMADVAQKLEQLEVMMSNVQEDDLSQLATETVHYNPAELYTWLDSMLTDLN-------------PPSS--------------------NAEYDLKAIPGDAILNQFAIDSASSSNQGGGGDTYTTNKRLKCSNGVVETTTATAESTRHVVLVDSQENGVRLVHALLACAEAVQKENLTVAEALVKQIGFLAVSQIGAMRKVATYFAEALARRIYRLSPSQSPIDHSLSDTLQMHFYETCPYLKFAHFTANQAILEAFQGKKRVHVIDFSMSQGLQWPALMQALALRPGGPPVFRLTGIGPPAPDNFDYLHEVGCKLAHLAEAIHVEFEYRGFVANTLADLDASMLELRPSEIESVAVNSVFELHKLLGRPGAIDKVLGVVNQIKPEIFTVVEQESNHNSPIFLDRFTESLHYYSTLFDSLEG---VPSGQDKVMSEVYLGKQICNVVACDGPDRVERHETLSQWRNRFGSAGFAAAHIGSNAFKQASMLLALFNGGEGYRVEESDGCLMLGWHTRPLIATSAWKLS 531
BLAST of Cs6g17530.1 vs. DB:SwissProt
Match: RGA2_BRACM (DELLA protein RGA2 OS=Brassica campestris OX=3711 GN=RGA2 PE=3 SV=1) HSP 1 Score: 703.745 bits (1815), Expect = 0.000e+0 Identity = 364/601 (60.57%), Postives = 431/601 (71.71%), Query Frame = 1 Query: 1 MKRDHQHXXXXXXXXXXXXXXXXTGNANKAKMW--EEEQDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSMLEGLNNTGFDSQARPIQDPAESSTVNSILGQQTSNQSRIFNDDSEYDLRAIPGSAAYPQPD-----SETENNR-------NKRMR---------------VEXXXXXXXXXXPTELARP-VVVDSQETGVQLVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYP-QDCLDSSYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSEVYLGRQICNIVACDGTDRNERHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLA 1710 MKRD G +++TG+++K KM +EE+D G MDELL VLGYKVRSSEMA+VA KLEQLE +MG QEDG+S+LATDTVHYNPS++ W+ +ML N P NS L S+YDL+AIPG+A Y + D S + +N+ KR++ + + + E R V+VDSQE GV+LVH LMACAEAIQ +L +A+ALVK IG LA +QAGAMRKVATYFAEALARRIYR+ P Q +D S +D LQMHFYETCPYLKFAHFTANQAILEAF RVHVIDFS+ QG+QWPALMQALALR GGPP FRLTGIGPP DN+D L +VG KLAQLA+ I VEFE+RGFV NSLADL+ ML++RP E+E VAVNSVFELH+LL R GGIEKV+ +K ++P I T+VEQE++HN PVFLDRFTE+LHYYS+LFDSLEG P SQD+VMSEVYLG+QICN+VAC+G DR ERHETL+QW R GS+GF P HLGSNA+KQASMLLALF GG+GYRVEENNGCLMLGWHTRPLI TSAW+L+ Sbjct: 1 MKRDLHQFQGPPDTRFPNHGTANTGSSSKDKMMMVKEEEDGGNMDELLAVLGYKVRSSEMAEVALKLEQLETMMGNVQEDGLSNLATDTVHYNPSELYSWLDNMLTEFN-------------PPPPEINNSFLAGAGG---------SDYDLKAIPGNAIYARSDQFAIDSSSSSNQAGDNSQSTKRLKSCSSPDSLVTGTTVTTTTTESTRSVGLAAESTRSMVLVDSQENGVRLVHALMACAEAIQNNDLSIAEALVKQIGFLAVSQAGAMRKVATYFAEALARRIYRLSPPQTQIDHSLSDTLQMHFYETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPVFRLTGIGPPAADNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSEIEAVAVNSVFELHKLLGRTGGIEKVLGVVKQIKPVIFTVVEQESSHNGPVFLDRFTESLHYYSTLFDSLEG---VPSSQDKVMSEVYLGKQICNLVACEGPDRVERHETLSQWANRFGSSGFAPAHLGSNAFKQASMLLALFNGGEGYRVEENNGCLMLGWHTRPLITTSAWKLS 576
BLAST of Cs6g17530.1 vs. DB:SwissProt
Match: RGA_ARATH (DELLA protein RGA OS=Arabidopsis thaliana OX=3702 GN=RGA PE=1 SV=1) HSP 1 Score: 696.041 bits (1795), Expect = 0.000e+0 Identity = 370/602 (61.46%), Postives = 440/602 (73.09%), Query Frame = 1 Query: 1 MKRDHQHXXXXXXXXXXXXXXXXTGNANKAKMWEEEQDTGGM--DELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSMLEGLNNTGFDSQARPIQDPAESSTVNSILGQQTSNQSRIFNDDSEYDLRAIPGSAAYPQP---DSETENNRNKRMRVEXXXXXXXXXXPT-----------------------ELARPVV-VDSQETGVQLVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYP-QDCLDSSYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSEVYLGRQICNIVACDGTDRNERHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLAKS 1716 MKRDH H + G + SSS+ + +K M ++E+D GG DELL VLGYKVRSSEMA+VA KLEQLE +M QEDG+SHLATDTVHYNPS++ W+ +ML LN P PA S+ ++ +L S + F S+YDL+ IPG+A Y P S + NN+NKR++ + + T T E R V+ VDSQE GV+LVH LMACAEAIQQ NL +A+ALVK IG LA +QAGAMRKVATYFAEALARRIYR+ P Q+ +D +D LQMHFYETCPYLKFAHFTANQAILEAF RVHVIDFS+ QG+QWPALMQALALR GGPP FRLTGIGPP PDN+D L +VG KLAQLA+ I VEFE+RGFV NSLADL+ ML++RP + E VAVNSVFELH+LL RPGGIEKV+ +K ++P I T+VEQE+NHN PVFLDRFTE+LHYYS+LFDSLEG P SQD+VMSEVYLG+QICN+VAC+G DR ERHETL+QW R GS+G P HLGSNA+KQASMLL++F G GYRVEE+NGCLMLGWHTRPLI TSAW+L+ + Sbjct: 1 MKRDH-HQFQGRLSNHGTSSSSSSISKDKMMMVKKEEDGGGNMDDELLAVLGYKVRSSEMAEVALKLEQLETMMSNVQEDGLSHLATDTVHYNPSELYSWLDNMLSELN---------PPPLPASSNGLDPVL---PSPEICGF-PASDYDLKVIPGNAIYQFPAIDSSSSSNNQNKRLKSCSSPDSMVTSTSTGTQIGGVIGTTVTTTTTTTTAAGESTRSVILVDSQENGVRLVHALMACAEAIQQNNLTLAEALVKQIGCLAVSQAGAMRKVATYFAEALARRIYRLSPPQNQIDHCLSDTLQMHFYETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGIGPPAPDNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSDTEAVAVNSVFELHKLLGRPGGIEKVLGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEG---VPNSQDKVMSEVYLGKQICNLVACEGPDRVERHETLSQWGNRFGSSGLAPAHLGSNAFKQASMLLSVFNSGQGYRVEESNGCLMLGWHTRPLITTSAWKLSTA 585
BLAST of Cs6g17530.1 vs. DB:SwissProt
Match: RGL1_ARATH (DELLA protein RGL1 OS=Arabidopsis thaliana OX=3702 GN=RGL1 PE=1 SV=1) HSP 1 Score: 692.575 bits (1786), Expect = 0.000e+0 Identity = 348/537 (64.80%), Postives = 415/537 (77.28%), Query Frame = 1 Query: 106 EQDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSMLEGLNNTGFDSQARPIQDPAESSTVNSILGQQTSNQSRIFNDDSEYDLRAIPGSAAYPQPDSETENNRNKRMRVEXXXXXXXXXXPTELARPVVVDSQETGVQLVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYPQDCLD-SSYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSEVYLGRQICNIVACDGTDRNERHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLAK 1713 +++ G+DELL VLGYKVRSS+MADVA KLEQLEMV+G DGIS+L+ +TVHYNPSD+SGWV+SML L+ T Q +P DSEYDLRAIPGSA YP+ + T R+KR R+E ++T ++ VV+DSQETGV+LVH L+ACAEA+QQ NLK+ADALVKH+GLLA++QAGAMRKVATYFAE LARRIYRIYP+D + SS++D LQ+HFYE+CPYLKFAHFTANQAILE F A +VHVID L G+QWPAL+QALALRP GPP FRLTGIG D +Q+VGWKL QLA TIGV FEF+ N+L+DL+P+MLDIRP +E+VAVNSVFELHRLLA PG I+K +S+IK++RP I+T+VEQEANHN VFLDRFTE+LHYYSSLFDSLEG PPSQD+VMSE++LGRQI N+VAC+G DR ERHETL QWR R G GF+PV +GSNAYKQASMLLAL+AG DGY VEEN GCL+LGW TRPLIATSAW++ + Sbjct: 25 KEEAAGVDELLVVLGYKVRSSDMADVAHKLEQLEMVLG----DGISNLSDETVHYNPSDLSGWVESMLSDLDPTRI--QEKP---------------------------DSEYDLRAIPGSAVYPRDEHVTR--RSKRTRIESELSSTRSV--------VVLDSQETGVRLVHALLACAEAVQQNNLKLADALVKHVGLLASSQAGAMRKVATYFAEGLARRIYRIYPRDDVALSSFSDTLQIHFYESCPYLKFAHFTANQAILEVFATAEKVHVIDLGLNHGLQWPALIQALALRPNGPPDFRLTGIGYSLTD----IQEVGWKLGQLASTIGVNFEFKSIALNNLSDLKPEMLDIRPG-LESVAVNSVFELHRLLAHPGSIDKFLSTIKSIRPDIMTVVEQEANHNGTVFLDRFTESLHYYSSLFDSLEG----PPSQDRVMSELFLGRQILNLVACEGEDRVERHETLNQWRNRFGLGGFKPVSIGSNAYKQASMLLALYAGADGYNVEENEGCLLLGWQTRPLIATSAWRINR 509
BLAST of Cs6g17530.1 vs. DB:SwissProt
Match: RGA1_BRACM (DELLA protein RGA1 OS=Brassica campestris OX=3711 GN=RGA1 PE=1 SV=1) HSP 1 Score: 692.189 bits (1785), Expect = 0.000e+0 Identity = 349/561 (62.21%), Postives = 424/561 (75.58%), Query Frame = 1 Query: 82 NKAKMWEEEQDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSMLEGLNNTGFDSQARPIQDPAESSTVNSILGQQTSNQSRIFNDDSEYDLRAIPGSAAYPQPDS---ETENNRNKRMRVEXXXXXXXXXXPT-------------ELARPVV-VDSQETGVQLVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYP-QDCLDSSYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSEVYLGRQICNIVACDGTDRNERHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLA 1710 +K M +EE+D DELL VLGYKVRSSEMA+VA KLEQLE +MG AQEDG++HLATDTVHYNP+++ W+ +ML LN P ++T ++ L + +N + + + DL+AIPG+A + + +++ NKR++ ++ ++ P+ E RP++ VDSQ+ GV+LVH LMACAEA+Q NL +A+ALVK IG LA +QAGAMRKVATYFAEALARRIYR+ P Q +D S +D LQMHFYETCPYLKFAHFTANQAILEAF RVHVIDFS+ QG+QWPALMQALALR GGPP+FRLTGIGPP DN+D L +VG KLAQLA+ I VEFE+RGFV NSLADL+ ML++RP E E VAVNSVFELH+LL R GGIEKV +K ++P I T+VEQE+NHN PVFLDRFTE+LHYYS+LFDSLEG+ P SQD+VMSEVYLG+QICN+VAC+G DR ERHETL+QW R GS+GF P HLGSNA+KQAS LLALF GG+GYRVEENNGCLML WHTRPLI TSAW+L+ Sbjct: 31 DKMMMVKEEED----DELLGVLGYKVRSSEMAEVALKLEQLETMMGNAQEDGLAHLATDTVHYNPAELYSWLDNMLTELN-------------PPAATTGSNALNPEINNNNNNNSFFTGGDLKAIPGNAVCRRSNQFAFAVDSSSNKRLK-PSSSPDSMVTSPSPAGVIGTTVTTVTESTRPLILVDSQDNGVRLVHALMACAEAVQSSNLTLAEALVKQIGFLAVSQAGAMRKVATYFAEALARRIYRLSPPQTQIDHSLSDTLQMHFYETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPSFRLTGIGPPAADNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSETEAVAVNSVFELHKLLGRTGGIEKVFGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGA---PSSQDKVMSEVYLGKQICNLVACEGPDRVERHETLSQWSNRFGSSGFAPAHLGSNAFKQASTLLALFNGGEGYRVEENNGCLMLSWHTRPLITTSAWKLS 570 The following BLAST results are available for this feature:
BLAST of Cs6g17530.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cs6g17530.1_Hzau_Valencia_v1.0 ID=Cs6g17530.1_Hzau_Valencia_v1.0; Name=Cs6g17530.1; organism=Citrus sinensis; type=mRNA; length=2705bpback to top protein sequence of Cs6g17530.1 >Cs6g17530.1_Hzau_Valencia_v2.0-protein ID=Cs6g17530.1_Hzau_Valencia_v2.0-protein; Name=Cs6g17530.1; organism=Citrus sinensis; type=polypeptide; length=577bpback to top protein sequence of Cs6g17530.1_Hzau_Valencia_v1.0 >Cs6g17530.1_Hzau_Valencia_v1.0 ID=Cs6g17530.1_Hzau_Valencia_v1.0; Name=Cs6g17530.1_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=577bpback to top mRNA from alignment at chr6:18003432..18006136+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2705bp; location=Sequence derived from: chr6:18003432..18006136+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at chr6:18003432..18006136+ >Cs6g17530.1_Hzau_Valencia_v1.0 ID=Cs6g17530.1_Hzau_Valencia_v1.0; Name=Cs6g17530.1; organism=Citrus sinensis; type=CDS; length=1731bp; location=Sequence derived from: chr6:18003432..18006136+ (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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