Cs6g19920.1, Cs6g19920.1_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Cs6g19920.1 vs. DB:SwissProt
Match: BL1S2_ARATH (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Arabidopsis thaliana OX=3702 GN=BLOS2 PE=1 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 2.186e-53 Identity = 79/112 (70.54%), Postives = 99/112 (88.39%), Query Frame = 1 Query: 28 TEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 363 ++RD+LAESL +LFTSVS+MVKSELQGTNN L+LLEKMNLRVA EY GDVAAGLRVF EQ+K KSG DE+V Q+D+IE+QV++FEAVIS+LD+YV+VLESK+++ Y+H Sbjct: 2 ADSRDDLAESLQNLFTSVSSMVKSELQGTNNHLDLLEKMNLRVASEYDDMGDVAAGLRVFAEQMKSKSGGLDEFVGQMDAIEKQVSEFEAVISVLDRYVSVLESKIRAEYRH 113
BLAST of Cs6g19920.1 vs. DB:SwissProt
Match: BL1S2_DICDI (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Dictyostelium discoideum OX=44689 GN=bloc1s2 PE=3 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 3.352e-13 Identity = 37/112 (33.04%), Postives = 63/112 (56.25%), Query Frame = 1 Query: 19 EPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 354 +P ++L S ++FT VS+ +KSEL T + LL +MN + +Y+ +V GL VF+ LK K F Y +I+ +++ VT E + +LD+Y LE K++++ Sbjct: 69 KPILPVTEDLQNSTKEMFTKVSSYIKSELATTVSDYNLLIQMNNITSSKYQDMTNVTKGLSVFMGDLKIKYEEFQPYFDKINELDKNVTDLEKTVQLLDEYTKRLEQKVKNI 180
BLAST of Cs6g19920.1 vs. DB:SwissProt
Match: BL1S2_XENTR (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Xenopus tropicalis OX=8364 GN=bloc1s2 PE=2 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 3.981e-10 Identity = 33/104 (31.73%), Postives = 54/104 (51.92%), Query Frame = 1 Query: 43 ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 354 ++ E D+F+ ++ + EL T+ +LLE MN + +Y D+A + ++ L KK S Y++QI+ IE+QV E LD Y LE+K + L Sbjct: 41 DINELCRDMFSKMALYLTGELTTTSEDYKLLENMNKLTSLKYMEMKDIAGNISRNLKDLNKKYASLQPYLEQINQIEEQVASLENAAYKLDAYSKRLEAKFKKL 144
BLAST of Cs6g19920.1 vs. DB:SwissProt
Match: BL1S2_HUMAN (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Homo sapiens OX=9606 GN=BLOC1S2 PE=1 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 2.494e-8 Identity = 31/104 (29.81%), Postives = 52/104 (50.00%), Query Frame = 1 Query: 43 ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 354 ++ E D+F+ ++ + EL T+ +LLE MN + +Y D+A + ++ L +K Y+ QI+ IE+QV E LD Y LE+K + L Sbjct: 36 DITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKL 139
BLAST of Cs6g19920.1 vs. DB:SwissProt
Match: BL1S2_RAT (Biogenesis of lysosome-related organelles complex-1 subunit 2 OS=Rattus norvegicus OX=10116 GN=Bloc1s2 PE=2 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 2.547e-8 Identity = 31/104 (29.81%), Postives = 52/104 (50.00%), Query Frame = 1 Query: 43 ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 354 ++ E D+F+ ++ + EL T+ +LLE MN + +Y D+A + ++ L +K Y+ QI+ IE+QV E LD Y LE+K + L Sbjct: 36 DINELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKL 139
BLAST of Cs6g19920.1 vs. DB:SwissProt
Match: BL1S2_MACFA (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Macaca fascicularis OX=9541 GN=BLOC1S2 PE=2 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 2.628e-8 Identity = 31/104 (29.81%), Postives = 52/104 (50.00%), Query Frame = 1 Query: 43 ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 354 ++ E D+F+ ++ + EL T+ +LLE MN + +Y D+A + ++ L +K Y+ QI+ IE+QV E LD Y LE+K + L Sbjct: 36 DITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKL 139
BLAST of Cs6g19920.1 vs. DB:SwissProt
Match: BL1S2_MOUSE (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Mus musculus OX=10090 GN=Bloc1s2 PE=1 SV=1) HSP 1 Score: 51.9878 bits (123), Expect = 3.033e-8 Identity = 31/104 (29.81%), Postives = 52/104 (50.00%), Query Frame = 1 Query: 43 ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 354 ++ E D+F+ ++ + EL T+ +LLE MN + +Y D+A + ++ L +K Y+ QI+ IE+QV E LD Y LE+K + L Sbjct: 37 DINELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAELQPYLDQINMIEEQVAALEQAAYKLDAYSKKLEAKYKKL 140
BLAST of Cs6g19920.1 vs. DB:SwissProt
Match: BL1S2_NEMVE (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Nematostella vectensis OX=45351 GN=bloc1s2 PE=3 SV=1) HSP 1 Score: 48.9062 bits (115), Expect = 7.471e-7 Identity = 31/104 (29.81%), Postives = 49/104 (47.12%), Query Frame = 1 Query: 43 ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 354 +L E+ F ++ + EL + LLE++N ++YK + L +E+L K S Y++QID IE V+ E LD Y LE+K + L Sbjct: 65 DLKETCRVAFDKITQYLNGELTASLEDYTLLEQLNNLTTDKYKEMSTMTKSLITTMEKLDDKYKSLQPYLEQIDRIEDSVSSLEQAAYRLDAYSKKLENKFKRL 168 The following BLAST results are available for this feature:
BLAST of Cs6g19920.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS) Total hits: 8 Position : 0 Zoom : x 1
InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cs6g19920.1_Hzau_Valencia_v1.0 ID=Cs6g19920.1_Hzau_Valencia_v1.0; Name=Cs6g19920.1; organism=Citrus sinensis; type=mRNA; length=597bpback to top protein sequence of Cs6g19920.1 >Cs6g19920.1_Hzau_Valencia_v2.0-protein ID=Cs6g19920.1_Hzau_Valencia_v2.0-protein; Name=Cs6g19920.1; organism=Citrus sinensis; type=polypeptide; length=126bpback to top protein sequence of Cs6g19920.1_Hzau_Valencia_v1.0 >Cs6g19920.1_Hzau_Valencia_v1.0 ID=Cs6g19920.1_Hzau_Valencia_v1.0; Name=Cs6g19920.1_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=126bpback to top mRNA from alignment at chr6:19595343..19596026- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=684bp; location=Sequence derived from: chr6:19595343..19596026- (Citrus sinensisback to top Coding sequence (CDS) from alignment at chr6:19595343..19596026- >Cs6g19920.1_Hzau_Valencia_v1.0 ID=Cs6g19920.1_Hzau_Valencia_v1.0; Name=Cs6g19920.1; organism=Citrus sinensis; type=CDS; length=378bp; location=Sequence derived from: chr6:19595343..19596026- (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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