Transcript Overview
Name Cs6g19730.4 Unique Name Cs6g19730.4_Hzau_Valencia_v1.0 Type mRNA Organism Citrus sinensis (Sweet orange) Sequence length 2020
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Cs6g19730.4 Cs6g19730.4_Hzau_Valencia_v2.0-protein Citrus sinensis polypeptide Cs6g19730.4_Hzau_Valencia_v1.0 Cs6g19730.4_Hzau_Valencia_v1.0 Citrus sinensis polypeptide
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g19730.4.utr5.1 Cs6g19730.4.utr5.1_Hzau_Valencia_v1.0 Citrus sinensis five_prime_UTR Cs6g19730.4.utr5.2 Cs6g19730.4.utr5.2_Hzau_Valencia_v1.0 Citrus sinensis five_prime_UTR
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g19730.4.exon.1 Cs6g19730.4.exon.1_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g19730.4.exon.2 Cs6g19730.4.exon.2_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g19730.4.exon.3 Cs6g19730.4.exon.3_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g19730.4.exon.4 Cs6g19730.4.exon.4_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g19730.4.exon.5 Cs6g19730.4.exon.5_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g19730.4.exon.6 Cs6g19730.4.exon.6_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g19730.4.exon.7 Cs6g19730.4.exon.7_Hzau_Valencia_v1.0 Citrus sinensis exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g19730.4.cds.1 Cs6g19730.4.cds.1_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g19730.4.cds.2 Cs6g19730.4.cds.2_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g19730.4.cds.3 Cs6g19730.4.cds.3_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g19730.4.cds.4 Cs6g19730.4.cds.4_Hzau_Valencia_v1.0 Citrus sinensis CDS
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g19730.4.utr3.1 Cs6g19730.4.utr3.1_Hzau_Valencia_v1.0 Citrus sinensis three_prime_UTR Cs6g19730.4.utr3.2 Cs6g19730.4.utr3.2_Hzau_Valencia_v1.0 Citrus sinensis three_prime_UTR Cs6g19730.4.utr3.3 Cs6g19730.4.utr3.3_Hzau_Valencia_v1.0 Citrus sinensis three_prime_UTR
Homology
BLAST of Cs6g19730.4 vs. DB:SwissProt
Match:
YWBO_BACSU (Uncharacterized protein YwbO OS=Bacillus subtilis (strain 168) OX=224308 GN=ywbO PE=4 SV=1)
HSP 1 Score: 54.299 bits (129), Expect = 3.433e-8
Identity = 39/131 (29.77%), Postives = 58/131 (44.27%), Query Frame = 1
Query: 40 VRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGD 432
V I V SD VCP+CFVGK ++AI D E+ W PF L PS P ++ + ++ Q I M E LG+E N ++ + + +K H +F +F + + IGD
Sbjct: 3 VHIKVYSDYVCPFCFVGKAAFEEAIKGK----DVEVEWMPFELRPS-PSPQLDPVNDPSKQYMWQTS--IQPMAE---KLGVEINFPNVSPHPYTDLAFEGFHFAKEYNKGHEYNTRVFQAFFQEDQNIGD 123
The following BLAST results are available for this feature:
BLAST of Cs6g19730.4 vs. DB:SwissProt
Analysis Date: 2018-06-07 (
C. sinensis v2.0, HZAU CDS )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 Expect = 3.43e-8 / Id = 29.77 Sequence YWBO_BACSU
Match Name E-value Identity Description
YWBO_BACSU 3.433e-8 29.77 Uncharacterized protein YwbO OS=Bacillus subtilis ... [more]
back to top
InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21
200 400 600 800 1000 1200 1400 1600 1800 2000 Expect = 3.4E-45 / Score = 156.9 Score = Score = Expect = 1.54229E-57 / Score = 176.617 Expect = 1.3E-22 / Score = 80.4 Score = Sequence G3DSA:3.40.30.10 PTHR13887 PTHR13887:SF38 cd03024 PF01323 SSF52833
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available GENE3D 3.40.30.10 coord: 5..150 None No IPR available PANTHER PTHR13887 GLUTATHIONE S-TRANSFERASE KAPPA coord: 1..145 None No IPR available PANTHER PTHR13887:SF38 FRNE PROTEIN-LIKE coord: 1..145 None No IPR available CDD cd03024 DsbA_FrnE coord: 16..144 IPR001853 DSBA-like thioredoxin domain PFAM PF01323 DSBA coord: 16..145 IPR036249 Thioredoxin-like superfamily SUPERFAMILY 52833 Thioredoxin-like coord: 14..145
Sequences
The
following sequences are available for this feature:
mRNA sequence
>Cs6g19730.4_Hzau_Valencia_v1.0 ID=Cs6g19730.4_Hzau_Valencia_v1.0; Name=Cs6g19730.4; organism=Citrus sinensis; type=mRNA; length=2020bp back to top protein sequence of Cs6g19730.4
>Cs6g19730.4_Hzau_Valencia_v2.0-protein ID=Cs6g19730.4_Hzau_Valencia_v2.0-protein; Name=Cs6g19730.4; organism=Citrus sinensis; type=polypeptide; length=168bp back to top protein sequence of Cs6g19730.4_Hzau_Valencia_v1.0
>Cs6g19730.4_Hzau_Valencia_v1.0 ID=Cs6g19730.4_Hzau_Valencia_v1.0; Name=Cs6g19730.4_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=168bp back to top mRNA from alignment at chr6:19434708..19437655+
Legend: five_prime_UTR exon polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=2948bp; location=Sequence derived from: chr6:19434708..19437655+ (Citrus sinensisAATTATAAATTATAAAACGTTTTCAATACAATTTTTCAAAAAGTTTATTT
GGGTAAATTTGTCTATGTGCGTAGGTGGGTAGCAGCATCTTGCTAACTCT
CAACTGTCAACGGTCAACCTTTCACCAACCTTCGTTTCATTTTACAAATA
TAAAAATTTTAAAACCGGCTATGGCTTTCATCTCTGTCACAAGATCCCTG
CTTGTTCATCCAG ATACATAAGAATC ATGGCTCAGTCG
GTAGGTAGCAGTGCTGGGAAAAAGCTTGTTCGAATTGATGTCAGTTCGGA
TACTGTATGCCCATGGTGTTTCGTGGGAAAAAGGAATTTGGACAAAGCTA
TAGCTTCTTCTAAGGATCAATATGATTTTGAG ATTAGATGGCATCCTTTTTTCCTGAATCCT
TCTGCACCTAAGGAAGGGGTTAACAAGAAAGATTTTTATGAGAATAAGTT
TGGATCTCAAAATCAAGGGATCATAGCTCGAATGACTGAG GTTTTTAGGGGTCTTG
GGTTGGAATATAACATGTCCGGACTGAC AGGAAA
TACACTAGATAGCCACAGGCTATTATATCTCGCTGGGCAGCAGGGTCTTG
ACAAGCAACACAATCTTGCGGAGGAATTGTTCCTTGGATACTTCACCCAG
GGGAAATACATTGGTGACAAGTGTGCTTACTTCTCATTGGACGAGTTTTT
TTTTTTTTTTTTTCCCGTCTCTAGTGAATATAAATCATGA ACTCACTCAC
CTAAAATGAAAAACACAACAACATTAGCTGATTTGTTTTGCCTGCTATAA
TTGCTATTTATGGTAGCACAGTTAGTTACAATAAGTTGTAAGCAATTGTA
AGTGTATGTCACTCATATCAACTTTAACCTAAGGAAAAGAAGAACAAGAT
TGAAAACTGAAACAAGCTTGCTATCAATCTTCAATTGAGTGGGGACTCGT
GACTGAACTGTGCTTTGGTGATGAAGTGCTGCATCATTACATTTCACAAC
AATGGTCAGTAACAGTCATGATTGGATGCAGAGAATTTCTTGTTGAATGC
GCTAGGAAGGTTGGGGTGGAAGGGGCAGCAGAATTTCTTGACGAACCCAA
CAATGGATTGAGTGAG GTTCATGAGGAGCTGAAGAACTACTCGGCAAACATTTCAGGCGTTCCT
CATTTTGTG CTTAATGGA
AAGCATGAGTTGAGCGGTGGTCAACCCCCGGAGGTTTTCCTAAGAGCTTT
TCAAGTTGCTGCTAACTGAAATTACTTGCAGCATGAAGCTTCTATGTTCA
GTCTTCAATAAGGATGCTTCTGCTTTTGTGGATTGTCGGCTTAAAACCAT
AATCTCTCTTATTATGCTAGCGTGTTCTAATACCTTGAAACTGGTTTGTA
AATTATATAACAAATGTTCAGATGAAATAAAAGTTAAGGCTTGTTGATTG
GGGGGTCTAATCATTTGTGATATGGTATGCATTGCTAATCTGCTAGACTA
CTCGGCTTCATAAACATTATTTTTACTTTTTTCCATGAGATCTGAGTCAT
GTAAGACACAGGAAAGACAAATATACCACAACTAAAATCATGTTTCTCTT
CATTCCACTCACACTTCAATGTAAAATGCTATTTTTCTGGAGGCTAAAGC
CAGATTTTCAGTAACACAAGGGGAAAATCATCAATGATTTGAATGACACT
TTTTGTATTTACTGTAGCCGACACAAATGACTTCATATTCACAAATGGAT
TTACAGGTCTCTTTTGATTTAAACATTCTTCCTTCAGTTGTTGCTGGTTC
CATCCACGAACAAAACCTTTGAAAGATCAAGTCGTTTCATCAAAAACCAT
CACCTACGAAAAGGTCAACGAGATGAAATTTTAGTAAAAATAATCAGAGA
AAAAGGTACAGGATAATATGGTTCATTCTAATGAAGAAAGCTTTAGAAGT
AAACCTTGCCACTTCTGCTTAACTAAATGCAATGTTGTCGCAATTAGATA
CTAAAAAATGATAAAATGGCAGGGCCAGAAACCTTAATCCCATGTTTT back to top Coding sequence (CDS) from alignment at chr6:19434708..19437655+
>Cs6g19730.4_Hzau_Valencia_v1.0 ID=Cs6g19730.4_Hzau_Valencia_v1.0; Name=Cs6g19730.4; organism=Citrus sinensis; type=CDS; length=504bp; location=Sequence derived from: chr6:19434708..19437655+ (Citrus sinensis back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term Definition
IPR001853 DSBA-like_thioredoxin_dom IPR036249 Thioredoxin-like_sf
Vocabulary: Molecular Function
Term Definition
GO:0015035 protein-disulfide reductase activity
