Cs6g12490.1, Cs6g12490.1_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Cs6g12490.1 vs. DB:SwissProt
Match: OPF13_ARATH (Transcription repressor OFP13 OS=Arabidopsis thaliana OX=3702 GN=OFP13 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.924e-24 Identity = 60/142 (42.25%), Postives = 82/142 (57.75%), Query Frame = 1 Query: 244 VNVCDTATCQLQALTAGDAGEELLEMAIKAL-RSKRLHFQPGNTGSILETAKFQFKD---------------------CVALAIDSEDAYSDFRRSMEEMVEAYG--LKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIFS 597 N +TA+ ++ DA E LEM ++ + RS+RL F PG T SILE + + K VA+A++SED Y DFRRSMEEMV ++G K WE LE +LA +LRMN +K+HG+IV AF+D+ S Sbjct: 71 TNSSETASHSTESDQDLDA--ESLEMVVRGVVRSERLFFDPGVTSSILEEIEEKSKSDLKSKETVAVGEDRSTPIEEISVAVAMESEDPYGDFRRSMEEMVTSHGELAKDWESLESMLAWYLRMNGRKSHGVIVSAFVDLLS 210
BLAST of Cs6g12490.1 vs. DB:SwissProt
Match: OPF15_ARATH (Transcription repressor OFP15 OS=Arabidopsis thaliana OX=3702 GN=OFP15 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.493e-15 Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 1 Query: 313 LEMAIKALRS-KRLHFQP-GNTGSILETAKFQ------FKDCVALAIDSEDAYSDFRRSMEEMVEAYGLKY-WEHLEELLALFLRMNKKKNHGIIVGAFIDIF 594 +E IK LRS +RL F+ G T SILE A + + + +++S+D YSDF+RSMEEMVEA+ L + W+ LE+LL FL++N K +H I AF+D+ Sbjct: 68 VENVIKGLRSSERLIFESKGETNSILEEATSKREEEDEEEGFMLFSLESDDPYSDFKRSMEEMVEAHALHHDWKSLEKLLLQFLKVNAKTSHRYIFAAFVDLL 170
BLAST of Cs6g12490.1 vs. DB:SwissProt
Match: OFP18_ARATH (Transcription repressor OFP18 OS=Arabidopsis thaliana OX=3702 GN=OFP18 PE=2 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 4.387e-11 Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 1 Query: 307 ELLEMAIKALRS-KRLHFQP-GNTGSILETA------KFQFKDCVALAIDSEDAYSDFRRSMEEMVEAYGLKY-WEHLEELLALFLRMNKKKNHGIIVGAFIDI 591 E +E IK L+S KRL F+ G + SILE A + + + L+++S D Y+DF+ SME+MVE + L + W LE+LL FL++N K +H I AF+D+ Sbjct: 93 ESIENVIKGLKSSKRLIFERRGTSNSILEEATKRDDHEEEEDGLMLLSLESNDPYTDFKNSMEKMVEVHVLHHDWISLEKLLFWFLKVNVKASHRYIFAAFVDL 196
BLAST of Cs6g12490.1 vs. DB:SwissProt
Match: OFP10_ARATH (Transcription repressor OFP10 OS=Arabidopsis thaliana OX=3702 GN=OFP10 PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 1.299e-9 Identity = 27/85 (31.76%), Postives = 50/85 (58.82%), Query Frame = 1 Query: 352 HFQPGN--TGSILETAKFQFKDCVALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIFSQ 600 H+ PG + ++L + + + VA+A +S + + D+++SM +M+E ++ L+ELL FL +N H +IV AF+D+ S Sbjct: 75 HYTPGPPVSPTVLRSPCPKIDESVAMAKESINPFEDYKKSMNQMIEERYIETESELKELLRCFLDINPSPQHNLIVRAFVDVCSH 159
BLAST of Cs6g12490.1 vs. DB:SwissProt
Match: OFP12_ARATH (Transcription repressor OFP12 OS=Arabidopsis thaliana OX=3702 GN=OFP12 PE=1 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 3.472e-9 Identity = 36/105 (34.29%), Postives = 52/105 (49.52%), Query Frame = 1 Query: 334 LRSKRLHFQ-PGNTGSILETAKFQFKD-------------CVALAIDSEDAYSDFRRSMEEMVEAY----GLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIF 594 L S+R F PG + SI ++ + +D V + S D Y+DFRRSM+EM++A L+ +E L ELL +L +N H I+ AF DI Sbjct: 111 LASRRFFFSSPGCSNSITDSPDLRCRDNYDTATRLLTGGTAVKHYVQSPDPYNDFRRSMQEMIDAVTNAGDLRRYEFLHELLLSYLSLNAADTHKFIIRAFADIL 215
BLAST of Cs6g12490.1 vs. DB:SwissProt
Match: OFP8_ORYSJ (Transcription repressor OFP8 OS=Oryza sativa subsp. japonica OX=39947 GN=OFP8 PE=1 SV=1) HSP 1 Score: 56.6102 bits (135), Expect = 1.666e-8 Identity = 25/65 (38.46%), Postives = 43/65 (66.15%), Query Frame = 1 Query: 406 KDCVALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIFSQ 600 K+ VA+A++S + Y DFR SM +MV + W+ L +LL FL +N ++H +I+ AF D++++ Sbjct: 152 KESVAVAVESAEPYEDFRESMVQMVVEKEIYAWDDLNDLLHQFLSLNSPRHHPLILHAFADLWTR 216
BLAST of Cs6g12490.1 vs. DB:SwissProt
Match: OFP6_ARATH (Transcription repressor OFP6 OS=Arabidopsis thaliana OX=3702 GN=OFP6 PE=1 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 2.217e-7 Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 1 Query: 415 VALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIF 594 VA+ DS+D Y DFR+SM +M+ + + L ELL FL +N +HGIIV AF +I+ Sbjct: 68 VAVEKDSDDPYLDFRQSMLQMILENQIYSKDELRELLQCFLSLNSHYHHGIIVRAFSEIW 127 The following BLAST results are available for this feature:
BLAST of Cs6g12490.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS) Total hits: 7 Position : 0 Zoom : x 1
InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cs6g12490.1_Hzau_Valencia_v1.0 ID=Cs6g12490.1_Hzau_Valencia_v1.0; Name=Cs6g12490.1; organism=Citrus sinensis; type=mRNA; length=987bpback to top protein sequence of Cs6g12490.1 >Cs6g12490.1_Hzau_Valencia_v2.0-protein ID=Cs6g12490.1_Hzau_Valencia_v2.0-protein; Name=Cs6g12490.1; organism=Citrus sinensis; type=polypeptide; length=223bpback to top protein sequence of Cs6g12490.1_Hzau_Valencia_v1.0 >Cs6g12490.1_Hzau_Valencia_v1.0 ID=Cs6g12490.1_Hzau_Valencia_v1.0; Name=Cs6g12490.1_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=223bpback to top mRNA from alignment at chr6:14140716..14141702+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=987bp; location=Sequence derived from: chr6:14140716..14141702+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at chr6:14140716..14141702+ >Cs6g12490.1_Hzau_Valencia_v1.0 ID=Cs6g12490.1_Hzau_Valencia_v1.0; Name=Cs6g12490.1; organism=Citrus sinensis; type=CDS; length=669bp; location=Sequence derived from: chr6:14140716..14141702+ (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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