Cs6g12500.1, Cs6g12500.1_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Cs6g12500.1 vs. DB:SwissProt
Match: OFP6_ARATH (Transcription repressor OFP6 OS=Arabidopsis thaliana OX=3702 GN=OFP6 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 7.529e-23 Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 1 Query: 280 PKIVDSIAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVWNE 483 P S+AV KDS+DPY DFR+SMLQMI+E +IYS D+L+ELL CFL LNS +H +IV+AF+ +W + Sbjct: 62 PLATASVAVEKDSDDPYLDFRQSMLQMILENQIYSKDELRELLQCFLSLNSHYHHGIIVRAFSEIWED 129
BLAST of Cs6g12500.1 vs. DB:SwissProt
Match: OFP8_ORYSJ (Transcription repressor OFP8 OS=Oryza sativa subsp. japonica OX=39947 GN=OFP8 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.444e-20 Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 1 Query: 292 DSIAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVWNEAVSKSPKKPC 513 +S+AV +S +PYEDFR SM+QM++EKEIY+ DDL +LL+ FL LNSP +H +I+ AF +W SP PC Sbjct: 153 ESVAVAVESAEPYEDFRESMVQMVVEKEIYAWDDLNDLLHQFLSLNSPRHHPLILHAFADLWTRNGLFSPPSPC 226
BLAST of Cs6g12500.1 vs. DB:SwissProt
Match: OFP8_ARATH (Transcription repressor OFP8 OS=Arabidopsis thaliana OX=3702 GN=OFP8 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.607e-18 Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 1 Query: 289 VDSIAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVWNEAVS 492 +S AVVK S DPYEDFR SM++MI+E++I++ +L++LL CFL LNS +H VIVQ F ++ S Sbjct: 153 AESFAVVKKSKDPYEDFRTSMVEMIVERQIFAPAELQQLLQCFLSLNSRQHHKVIVQVFLEIYATLFS 220
BLAST of Cs6g12500.1 vs. DB:SwissProt
Match: OFP7_ARATH (Transcription repressor OFP7 OS=Arabidopsis thaliana OX=3702 GN=OFP7 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.759e-17 Identity = 32/64 (50.00%), Postives = 51/64 (79.69%), Query Frame = 1 Query: 286 IVDSIAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVW 477 +V+ +AVVK S DPYEDF+ SM++MI+EK+++ +L++LL+CFL LN+ +H IV+AF+ +W Sbjct: 224 MVEGVAVVKKSEDPYEDFKGSMMEMIVEKKMFEVAELEQLLSCFLSLNAKRHHRAIVRAFSEIW 287
BLAST of Cs6g12500.1 vs. DB:SwissProt
Match: OFP10_ARATH (Transcription repressor OFP10 OS=Arabidopsis thaliana OX=3702 GN=OFP10 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.764e-17 Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 1 Query: 259 PKVL-SPCPKIVDSIAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGV 474 P VL SPCPKI +S+A+ K+S +P+ED+++SM QMI E+ I + +LKELL CFL +N H++IV+AF V Sbjct: 84 PTVLRSPCPKIDESVAMAKESINPFEDYKKSMNQMIEERYIETESELKELLRCFLDINPSPQHNLIVRAFVDV 156
BLAST of Cs6g12500.1 vs. DB:SwissProt
Match: OFP4_ARATH (Transcription repressor OFP4 OS=Arabidopsis thaliana OX=3702 GN=OFP4 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.602e-15 Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 1 Query: 262 KVLSPCPKIVDSIAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVWNEAV 489 K S +I+DS AV+K S DP +DFR SM++MI E I +++D+++LL C+L LN HD+I++ F VW E + Sbjct: 233 KSRSQNKQILDSFAVIKSSIDPSKDFRESMVEMIAENNIRTSNDMEDLLVCYLTLNPKEYHDLIIKVFVQVWLEVI 308
BLAST of Cs6g12500.1 vs. DB:SwissProt
Match: OFP3_ARATH (Transcription repressor OFP3 OS=Arabidopsis thaliana OX=3702 GN=OFP3 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.160e-15 Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 1 Query: 286 IVDSIAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVW 477 +V S A+V S DP +DFR SM++MIME ++ DL++LL C+L LNS HDVI++AF W Sbjct: 222 VVKSFAIVLSSVDPEKDFRESMVEMIMENKMREQKDLEDLLACYLSLNSSEYHDVIIKAFENTW 285
BLAST of Cs6g12500.1 vs. DB:SwissProt
Match: OFP2_ARATH (Transcription repressor OFP2 OS=Arabidopsis thaliana OX=3702 GN=OFP2 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 7.820e-13 Identity = 29/64 (45.31%), Postives = 44/64 (68.75%), Query Frame = 1 Query: 286 IVDSIAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVW 477 +++S AV+K S DP +DFR SM++MI E I ++ DL++LL C+L LN HD+I+ F +W Sbjct: 250 VLESFAVMKRSVDPKKDFRESMIEMIEENNIRASKDLEDLLACYLTLNPKEYHDLIIHVFEQIW 313
BLAST of Cs6g12500.1 vs. DB:SwissProt
Match: OFP5_ARATH (Transcription repressor OFP5 OS=Arabidopsis thaliana OX=3702 GN=OFP5 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.373e-12 Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 1 Query: 292 DSIAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVWNE 483 +S AVVK S+DP +DFR SM++MIME I ++LKELL C+L+LN+ HD+I+ F V N+ Sbjct: 282 ESFAVVKCSSDPQKDFRDSMIEMIMENGINHPEELKELLVCYLRLNTDEYHDMIISVFQQVHND 345
BLAST of Cs6g12500.1 vs. DB:SwissProt
Match: OFP1_ARATH (Transcription repressor OFP1 OS=Arabidopsis thaliana OX=3702 GN=OFP1 PE=1 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 3.596e-10 Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1 Query: 304 VVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVW 477 VVK S DP DF+ SM +MI E +I + DL+ELL C+L LNS H +I+ F +W Sbjct: 202 VVKASVDPKRDFKESMEEMIAENKIRATKDLEELLACYLCLNSDEYHAIIINVFKQIW 259 The following BLAST results are available for this feature:
BLAST of Cs6g12500.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cs6g12500.1_Hzau_Valencia_v1.0 ID=Cs6g12500.1_Hzau_Valencia_v1.0; Name=Cs6g12500.1; organism=Citrus sinensis; type=mRNA; length=1000bpback to top protein sequence of Cs6g12500.1 >Cs6g12500.1_Hzau_Valencia_v2.0-protein ID=Cs6g12500.1_Hzau_Valencia_v2.0-protein; Name=Cs6g12500.1; organism=Citrus sinensis; type=polypeptide; length=179bpback to top protein sequence of Cs6g12500.1_Hzau_Valencia_v1.0 >Cs6g12500.1_Hzau_Valencia_v1.0 ID=Cs6g12500.1_Hzau_Valencia_v1.0; Name=Cs6g12500.1_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=179bpback to top mRNA from alignment at chr6:14142015..14143014- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1000bp; location=Sequence derived from: chr6:14142015..14143014- (Citrus sinensisback to top Coding sequence (CDS) from alignment at chr6:14142015..14143014- >Cs6g12500.1_Hzau_Valencia_v1.0 ID=Cs6g12500.1_Hzau_Valencia_v1.0; Name=Cs6g12500.1; organism=Citrus sinensis; type=CDS; length=537bp; location=Sequence derived from: chr6:14142015..14143014- (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|