Transcript Overview
| Name | Cs6g12510.2 |
|---|
| Unique Name | Cs6g12510.2_Hzau_Valencia_v1.0 |
|---|
| Type | mRNA |
|---|
| Organism | Citrus sinensis (Sweet orange) |
|---|
| Sequence length | 1719 |
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Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Cs6g12510.2 | Cs6g12510.2_Hzau_Valencia_v2.0-protein | Citrus sinensis | polypeptide |
| Cs6g12510.2_Hzau_Valencia_v1.0 | Cs6g12510.2_Hzau_Valencia_v1.0 | Citrus sinensis | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Cs6g12510.2.utr5.1 | Cs6g12510.2.utr5.1_Hzau_Valencia_v1.0 | Citrus sinensis | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Cs6g12510.2.exon.1 | Cs6g12510.2.exon.1_Hzau_Valencia_v1.0 | Citrus sinensis | exon |
| Cs6g12510.2.exon.2 | Cs6g12510.2.exon.2_Hzau_Valencia_v1.0 | Citrus sinensis | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Cs6g12510.2.cds.1 | Cs6g12510.2.cds.1_Hzau_Valencia_v1.0 | Citrus sinensis | CDS |
| Cs6g12510.2.cds.2 | Cs6g12510.2.cds.2_Hzau_Valencia_v1.0 | Citrus sinensis | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Cs6g12510.2.utr3.1 | Cs6g12510.2.utr3.1_Hzau_Valencia_v1.0 | Citrus sinensis | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
BLAST of Cs6g12510.2 vs. DB:SwissProt
Analysis Date: 2018-06-07 ( C. sinensis v2.0, HZAU CDS)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
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InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR009688 | Domain of unknown function DUF1279 | PFAM | PF06916 | DUF1279 | coord: 97..145
e-value: 1.1E-11
score: 45.0 |
| None | No IPR available | PANTHER | PTHR21377:SF10 | SUBFAMILY NOT NAMED | coord: 1..147 |
| None | No IPR available | PANTHER | PTHR21377 | UNCHARACTERIZED | coord: 1..147 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cs6g12510.2_Hzau_Valencia_v1.0 ID=Cs6g12510.2_Hzau_Valencia_v1.0; Name=Cs6g12510.2; organism=Citrus sinensis; type=mRNA; length=1719bp
GTGTCTCAAATTTGCTTTGCCACGGCTTTTGTACTTTTTTTTCTATTCGC
ACGACTAAAAGAGTATGCTTTGAGCGGGTTGATGATATTTTTTGTTTTTG
CTGAAAATGGCAACAACTCTGCTAAGCCATTCTCTCTTATCAGCTTCAAT
CTTGAATAGCAACAACAACTGCAAATTCTGCTATGTTGGTTCAATTCAAT
CCTCAAAACCCGTCTGGAAAAGCTTCAAAGTCAGAGCCATCAAAGAAGAA
ACAGAAGAAAAAACTTCATCTTCTGCTTCTGCTTCTGCTGAGGACATTAC
AAAGAAGTATGGCCTTGAAGCTGGCCTTTGGCAGATATTCAGGTCAAAAG
AGGAAGGAAATGCGGAAGGTGATAAAAAGAAATCAAGGGGGGATCAAGCA
AAGGAACTGCTAGCCAAATATGGAGGGGCATACCTAGCCACTTCTATAAC
ACTCTCCTTGATCTCATTCTCTCTCTGCTACGTGCTAATTGCTGCTGGAG
TTGATGTTCAAGCTTTGCTGCAGAAGGTAACTACAACCACCAAAGAAAGC
CTAAGTAGCTGTCTCATTGTGTTGCAAATTTCAGCTTTTAGATTAACAAC
TTTGTTTGGAAATTGGAACTTAATAGGTGGGCATCTCAACTGATGCAACT
GGTGAAAAGGTGGGGATATTTGCTTTGGCATATGCTGCACACAAGGCTGC
ATCTCCAATTAGGTTTCCTCCAACAGTAGCTCTGACTCCTATTGTTGCTA
GGTGGATCGGAAAGAAAGTTGAAAACGAGAAATAACTTGCTTAGGTTCTT
GCTTAGATGCAAGGCGCTTCATGTATAATGCTCATCTTTTTGTCTAGTTT
CTCTGGTGTTAGATTCACGTGTTCTCTTAAATATTAATGACATTTTGGTT
AACAGAAAATGGGGATGCGAATATGATCTTTTTCTGGCAGCAGAAATCAT
AGCACTTTCACCTAAAGTGTCATGATACCAATAAAAAGCAAAAGAATAGT
TTGGATCAATTGTTGACGTTACGATCAAACCGAATTTTTAGCATTACATT
ACATGATACTATATAATCCTATCTGTTGCCAGTCAAGCTTACCATCTGAG
CTTGTCGCTACAACAAAGTGAAAAGGTATGCTGTAATATACAGGGCTCTT
AACTACAAATACATACTTTATTTACTAAGATCGTATCGGATCATATATAT
TACTCGACTGTACAATCCCGATACCTCTTCCTATTCTTTAGTGCATTGGA
ATCTTGATGACTCCTCAGGACCTTCAGCCGCACCTCCAATTATCAAAATG
AACAATAGGTGGACATCAAACTGAACAATGGGTAGACATCCCAGTTTCTA
GACAACAAGACCACGTATCTTCACTTTCTCGTTTATCAACATATCTCGCT
CACCTTCCAGTATTAGCAGCAGCAGGTGGCGCTTCTGCAGTATTGGATGG
TGGAGTTTGGGGCTGTGGTGTGCTGACAGTAGGCATGCCATAATCCTCTT
GAAGTGTACCCAAATCATTCCATTCCACCCCAGCTATTAGGTGAGTCAAG
TTTGGCATTTATTTTTTGCTCAAAGATATTATGTAGCAAAAGGGGAAAAA
AGGGGGCGGGGGGTGTGTGGGAAGAAATAATGATTGAAACATGTTAATGA
AAAGGATACGTTCAGTTCGCCAAATGTCTGTGATGCTAACTCCAGCATCT
GATAAAAGCCAGTAATCTG back to topprotein sequence of Cs6g12510.2 >Cs6g12510.2_Hzau_Valencia_v2.0-protein ID=Cs6g12510.2_Hzau_Valencia_v2.0-protein; Name=Cs6g12510.2; organism=Citrus sinensis; type=polypeptide; length=179bp
MATTLLSHSLLSASILNSNNNCKFCYVGSIQSSKPVWKSFKVRAIKEETE
EKTSSSASASAEDITKKYGLEAGLWQIFRSKEEGNAEGDKKKSRGDQAKE
LLAKYGGAYLATSITLSLISFSLCYVLIAAGVDVQALLQKVTTTTKESLS
SCLIVLQISAFRLTTLFGNWNLIGGHLN* back to topprotein sequence of Cs6g12510.2_Hzau_Valencia_v1.0 >Cs6g12510.2_Hzau_Valencia_v1.0 ID=Cs6g12510.2_Hzau_Valencia_v1.0; Name=Cs6g12510.2_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=179bp
MATTLLSHSLLSASILNSNNNCKFCYVGSIQSSKPVWKSFKVRAIKEETE
EKTSSSASASAEDITKKYGLEAGLWQIFRSKEEGNAEGDKKKSRGDQAKE
LLAKYGGAYLATSITLSLISFSLCYVLIAAGVDVQALLQKVTTTTKESLS
SCLIVLQISAFRLTTLFGNWNLIGGHLN* back to topmRNA from alignment at chr6:14147326..14149528+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. > ID=; Name=; organism= ; type=; length=2203bp; location=Sequence derived from: chr6:14147326..14149528+ (Citrus sinensis
GTGTCTCAAATTTGCTTTGCCACGGCTTTTGTACTTTTTTTTCTATTCGC
ACGACTAAAAGAGTATGCTTTGAGCGGGTTGATGATATTTTTTGTTTTTG
CTGAAAATGGCAACAACTCTGCTAAGCCATTCTCTCTTATCAGCTTCAAT
CTTGAATAGCAACAACAACTGCAAATTCTGCTATGTTGGTTCAATTCAAT
CCTCAAAACCCGTCTGGAAAAGCTTCAAAGTCAGAGCCATCAAAGAAGAA
ACAGAAGAAAAAACTTCATCTTCTGCTTCTGCTTCTGCTGAGGACATTAC
AAAGAAGTATGGCCTTGAAGCTGGCCTTTGGCAGGTACCCATTTCACTTA
TCTTTCTTATTTGGGCATCTCAAGTGTAAATTCTAATAGTAATGATCGAA
GAATTTATCTGTTTTTATTTTTTATTTTTTGTATGATTGTGGATGTAGTT
ATTTGAGAAGTAATTTTGGCAATTGTGTTCATAGGATGAAAGAAACTGCT
TACATGAGTTACTAGTTGTGTAAATTAATTAAAGATTGTTCTTTCAATAG
CAAGGCCATAGTAACCGTCTTGTTTATTAATTTACTTGCACATATAGATA
AAGTAGAAGAAGGCTTCGTTTGGTATTTCACTGCTCTGGCTAAAGCCACT
GCCGTGAAATCAAAGCTCTAGCCGTGAAGTAAAGGTTGCTAGTGTCATCT
CCAATATTTAGGAGATACCAAAAAATTTAGTGAAATTAATGACAATTTTG
CTTCTGCAGTTGTATATTATTATATCCCCTGATTGGTAAAATTAATTGAT
CCATCTTTTACTCTATAGATATTCAGGTCAAAAGAGGAAGGAAATGCGGA
AGGTGATAAAAAGAAATCAAGGGGGGATCAAGCAAAGGAACTGCTAGCCA
AATATGGAGGGGCATACCTAGCCACTTCTATAACACTCTCCTTGATCTCA
TTCTCTCTCTGCTACGTGCTAATTGCTGCTGGAGTTGATGTTCAAGCTTT
GCTGCAGAAGGTAACTACAACCACCAAAGAAAGCCTAAGTAGCTGTCTCA
TTGTGTTGCAAATTTCAGCTTTTAGATTAACAACTTTGTTTGGAAATTGG
AACTTAATAGGTGGGCATCTCAACTGATGCAACTGGTGAAAAGGTGGGGA
TATTTGCTTTGGCATATGCTGCACACAAGGCTGCATCTCCAATTAGGTTT
CCTCCAACAGTAGCTCTGACTCCTATTGTTGCTAGGTGGATCGGAAAGAA
AGTTGAAAACGAGAAATAACTTGCTTAGGTTCTTGCTTAGATGCAAGGCG
CTTCATGTATAATGCTCATCTTTTTGTCTAGTTTCTCTGGTGTTAGATTC
ACGTGTTCTCTTAAATATTAATGACATTTTGGTTAACAGAAAATGGGGAT
GCGAATATGATCTTTTTCTGGCAGCAGAAATCATAGCACTTTCACCTAAA
GTGTCATGATACCAATAAAAAGCAAAAGAATAGTTTGGATCAATTGTTGA
CGTTACGATCAAACCGAATTTTTAGCATTACATTACATGATACTATATAA
TCCTATCTGTTGCCAGTCAAGCTTACCATCTGAGCTTGTCGCTACAACAA
AGTGAAAAGGTATGCTGTAATATACAGGGCTCTTAACTACAAATACATAC
TTTATTTACTAAGATCGTATCGGATCATATATATTACTCGACTGTACAAT
CCCGATACCTCTTCCTATTCTTTAGTGCATTGGAATCTTGATGACTCCTC
AGGACCTTCAGCCGCACCTCCAATTATCAAAATGAACAATAGGTGGACAT
CAAACTGAACAATGGGTAGACATCCCAGTTTCTAGACAACAAGACCACGT
ATCTTCACTTTCTCGTTTATCAACATATCTCGCTCACCTTCCAGTATTAG
CAGCAGCAGGTGGCGCTTCTGCAGTATTGGATGGTGGAGTTTGGGGCTGT
GGTGTGCTGACAGTAGGCATGCCATAATCCTCTTGAAGTGTACCCAAATC
ATTCCATTCCACCCCAGCTATTAGGTGAGTCAAGTTTGGCATTTATTTTT
TGCTCAAAGATATTATGTAGCAAAAGGGGAAAAAAGGGGGCGGGGGGTGT
GTGGGAAGAAATAATGATTGAAACATGTTAATGAAAAGGATACGTTCAGT
TCGCCAAATGTCTGTGATGCTAACTCCAGCATCTGATAAAAGCCAGTAAT
CTG back to topCoding sequence (CDS) from alignment at chr6:14147326..14149528+ >Cs6g12510.2_Hzau_Valencia_v1.0 ID=Cs6g12510.2_Hzau_Valencia_v1.0; Name=Cs6g12510.2; organism=Citrus sinensis; type=CDS; length=537bp; location=Sequence derived from: chr6:14147326..14149528+ (Citrus sinensis
ATGGCAACAACTCTGCTAAGCCATTCTCTCTTATCAGCTTCAATCTTGAA
TAGCAACAACAACTGCAAATTCTGCTATGTTGGTTCAATTCAATCCTCAA
AACCCGTCTGGAAAAGCTTCAAAGTCAGAGCCATCAAAGAAGAAACAGAA
GAAAAAACTTCATCTTCTGCTTCTGCTTCTGCTGAGGACATTACAAAGAA
GTATGGCCTTGAAGCTGGCCTTTGGCAGATATTCAGGTCAAAAGAGGAAG
GAAATGCGGAAGGTGATAAAAAGAAATCAAGGGGGGATCAAGCAAAGGAA
CTGCTAGCCAAATATGGAGGGGCATACCTAGCCACTTCTATAACACTCTC
CTTGATCTCATTCTCTCTCTGCTACGTGCTAATTGCTGCTGGAGTTGATG
TTCAAGCTTTGCTGCAGAAGGTAACTACAACCACCAAAGAAAGCCTAAGT
AGCTGTCTCATTGTGTTGCAAATTTCAGCTTTTAGATTAACAACTTTGTT
TGGAAATTGGAACTTAATAGGTGGGCATCTCAACTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009688 | FAM210A/B-like_dom |
|
