Cs6g12520.1, Cs6g12520.1_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis

Transcript Overview


Name	Cs6g12520.1
Unique Name	Cs6g12520.1_Hzau_Valencia_v1.0
Type	mRNA
Organism	Citrus sinensis (Sweet orange)
Sequence length	1622

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus sinensis Valencia genome v1.0 (HZAU)	2013-01-22
C. sinensis v2.0, HZAU CDS	2018-06-07
C. sinensis v2.0 peptides	2018-06-21

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cscsiL154	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
cscsiL626	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
csicsiR135	Citrus sinensis Valencia genome v1.0 (HZAU)	Citrus sinensis
cccsiL193	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cccsiL297	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cmcsiL393	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmcsiL491	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
csifhR610	Fortunella hindsii genome v1.0	Fortunella hindsii
csifhR620	Fortunella hindsii genome v1.0	Fortunella hindsii
csifhR621	Fortunella hindsii genome v1.0	Fortunella hindsii
csiptR398	Poncirus trifoliata genome v1.3.1 (JGI)	Poncirus trifoliata
csiptR405	Poncirus trifoliata genome v1.3.1 (JGI)	Poncirus trifoliata
clpcsiL391	Citrus limon L. Burm f. genome v1.0 - Primary	Citrus limon
clacsiL379	Citrus limon L. Burm f. genome v1.0 - Alternative	Citrus limon
clpcsiL492	Citrus limon L. Burm f. genome v1.0 - Primary	Citrus limon
clacsiL489	Citrus limon L. Burm f. genome v1.0 - Alternative	Citrus limon
csiswoR357	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
csidvaR345	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
csidvaR354	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
csidvbR363	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
csidvbR375	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
csiswoR377	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
csiswR423	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
csiswR443	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis

Orthologs


Gene/Transcript	Assembly	Species
Ciclev10028409m	Citrus clementina genome v1.0 (JGI)	Citrus clementina
sjg077560.1	Fortunella hindsii genome v1.0	Fortunella hindsii
sjg205290.1	Fortunella hindsii genome v1.0	Fortunella hindsii
CL8G029059011.t1_pri	Citrus limon L. Burm f. genome v1.0 - Primary	Citrus limon
Ptrif.0006s1405.1.v1.3.1	Poncirus trifoliata genome v1.3.1 (JGI)	Poncirus trifoliata
Ptrif.0008s1614.1.v1.3.1	Poncirus trifoliata genome v1.3.1 (JGI)	Poncirus trifoliata
Cg8g013080.2	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
Cg6g014760.1	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
CL8G064958012.t1_alt	Citrus limon L. Burm f. genome v1.0 - Alternative	Citrus limon

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Cs8g_pb013280.1	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
gene-KPL70_018441-mRNA11	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
gene-KPL71_024393-mRNA1	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
Cs6g13890.1	Citrus sinensis Valencia genome v1.0 (HZAU)	Citrus sinensis
orange1.1g012778m.v1.1	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
gene-KPL70_023914-mRNA1	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
Cs_ont_6g009220.1	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
Cs6g_pb012840.1	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
Cs_ont_8g008890.1	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Cs6g12520	Cs6g12520_Hzau_Valencia_v1.0	Citrus sinensis	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g12520.1	Cs6g12520.1_Hzau_Valencia_v2.0-protein	Citrus sinensis	polypeptide
Cs6g12520.1_Hzau_Valencia_v1.0	Cs6g12520.1_Hzau_Valencia_v1.0	Citrus sinensis	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g12520.1.cds.14	Cs6g12520.1.cds.14_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g12520.1.cds.13	Cs6g12520.1.cds.13_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g12520.1.cds.12	Cs6g12520.1.cds.12_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g12520.1.cds.11	Cs6g12520.1.cds.11_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g12520.1.cds.10	Cs6g12520.1.cds.10_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g12520.1.cds.9	Cs6g12520.1.cds.9_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g12520.1.cds.8	Cs6g12520.1.cds.8_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g12520.1.cds.7	Cs6g12520.1.cds.7_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g12520.1.cds.6	Cs6g12520.1.cds.6_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g12520.1.cds.5	Cs6g12520.1.cds.5_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g12520.1.cds.4	Cs6g12520.1.cds.4_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g12520.1.cds.3	Cs6g12520.1.cds.3_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g12520.1.cds.2	Cs6g12520.1.cds.2_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g12520.1.cds.1	Cs6g12520.1.cds.1_Hzau_Valencia_v1.0	Citrus sinensis	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g12520.1.exon.14	Cs6g12520.1.exon.14_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g12520.1.exon.13	Cs6g12520.1.exon.13_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g12520.1.exon.12	Cs6g12520.1.exon.12_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g12520.1.exon.11	Cs6g12520.1.exon.11_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g12520.1.exon.10	Cs6g12520.1.exon.10_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g12520.1.exon.9	Cs6g12520.1.exon.9_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g12520.1.exon.8	Cs6g12520.1.exon.8_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g12520.1.exon.7	Cs6g12520.1.exon.7_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g12520.1.exon.6	Cs6g12520.1.exon.6_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g12520.1.exon.5	Cs6g12520.1.exon.5_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g12520.1.exon.4	Cs6g12520.1.exon.4_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g12520.1.exon.3	Cs6g12520.1.exon.3_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g12520.1.exon.2	Cs6g12520.1.exon.2_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g12520.1.exon.1	Cs6g12520.1.exon.1_Hzau_Valencia_v1.0	Citrus sinensis	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g12520.1.utr5.1	Cs6g12520.1.utr5.1_Hzau_Valencia_v1.0	Citrus sinensis	five_prime_UTR

Homology

[Close]

BLAST of Cs6g12520.1 vs. DB:SwissProt
Match: E2FB_ARATH (Transcription factor E2FB OS=Arabidopsis thaliana OX=3702 GN=E2FB PE=1 SV=1)

HSP 1 Score: 493.041 bits (1268), Expect = 1.555e-171
Identity = 273/448 (60.94%), Postives = 323/448 (72.10%), Query Frame = 1

Query:   13 QTPQDSSAFKRQL--PFSAMKPPFLAPGGDYHRFAAEPHR----LPDQE-AEAIVVKSPQLKRKSDTADHDAESSEKTTGPGYTEIVNSPLQTPVSGKGGKAQKTSRLAKNSKIGPQISASNLGSPGNNLTPTGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEIHGAE------------AEAPPNLPSNSGFNENQTATV-ITEESRGKEIEVQE-QDSQRICTDLSSSQDFVSGIMKIVPSEVDSDADYWLLSDAG-VSITDIWRTEPGVEWNDLGTLQEDYG 1290
            + PQ   + KRQL    S+MKPP +APG +YHRF A   R    + DQ  ++AIV+KS  LKRK+D  +   E +E  TG          LQTPVSGKGGKA+KTSR AK++K G   S SN GSPGNN    G CRYDSSLGLLTKKFINLIK AEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEK LKNRIQWKGLDVS+PGE  E+ ++LQ EV++L  +E RLD+QIR  QERL  LSEDENN++ LFVTE+DIK+LPCFQN+TLIA+KAPHGTTLEVPDPDEA  Y QRRYRI+LRSTMGPIDVYLVSQFEE FE+I  A+             + P NLPS SG  EN   ++ + EES  + +E QE  D+QR+ +D+  S DFV GIMKIVP ++D   DYW  S+ G VSITD+W  E G +WN + T  +D+ 
Sbjct:    4 EVPQQFPSSKRQLHPSLSSMKPPLVAPG-EYHRFDAAETRGGGAVADQVVSDAIVIKS-TLKRKTDLVNQIVEVNELNTGV---------LQTPVSGKGGKAKKTSRSAKSNKSGTLASGSNAGSPGNNFAQAGTCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKTLKNRIQWKGLDVSKPGETIESIANLQDEVQNLAAEEARLDDQIRESQERLTSLSEDENNKRLLFVTENDIKNLPCFQNKTLIAVKAPHGTTLEVPDPDEAGGY-QRRYRIILRSTMGPIDVYLVSQFEESFEDIPQADEPSNVPDEPSNVPDVPSNLPSTSGLPENHDVSMPMKEESTERNMETQEVDDTQRVYSDI-ESHDFVDGIMKIVPPDLDMGVDYWFRSEVGEVSITDMWPDESGPDWNQMITFDQDHA 438

[Close]

BLAST of Cs6g12520.1 vs. DB:SwissProt
Match: E2FA_ARATH (Transcription factor E2FA OS=Arabidopsis thaliana OX=3702 GN=E2FA PE=1 SV=1)

HSP 1 Score: 427.172 bits (1097), Expect = 2.001e-145
Identity = 242/441 (54.88%), Postives = 304/441 (68.93%), Query Frame = 1

Query:   37 FKRQLPFSAMKPPFLAPGGDYHRFAAEPHRLP--------------DQEAEAIVVKSPQLKRKSDTADHDAESSEKTTGPGYTEIVNSPLQTPVSGKGGKAQKTSRLAKNSKIGPQISAS-NLGSPGNNLTPTGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADENAS--SLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEIHGAEAEAPPNLP--SNSGFNENQTATVITEESRGKEIEVQEQDSQRI--CTDLSSSQDFVSGIMKIVPSEVDSD-ADYWLLSDAGVSITDIWRTEPGVEWNDLGTLQEDYGM 1293
             +R L F++ KPPF  P  DYHRF   P  L               D+E +A+VV+SP  KRK+      A S+   T  G+T I +SP QTP   KGG+    S+ AK +K  PQ   S N GSP   LTP+G CRYDSSLGLLTKKF+NLIK A+DG+LDLNKAA+TLEVQKRRIYDITNVLEGI LIEK  KNRI WKG+D   PG+ D + S   LQAE+E+L ++E+ LD QIR  +ERLRDLSE+E NQKWLFVTE+DIKSLP FQN+TLIA+KAPHGTTLEVPDPDEA D+PQRRYRI+LRSTMGPIDVYLVS+FE KFE+ +G+ A  P  LP  S+SG   +     +T ++    I   +    +    +DL+  Q+ V G++KI PS+V++D +DYWLLS+A +S+TDIW+T+ G++W        DYG+
Sbjct:   38 IRRHLAFASTKPPF-HPSDDYHRF--NPSSLSNNNDRSFVHGCGVVDREEDAVVVRSPSRKRKATMDMVVAPSNNGFTSSGFTNIPSSPCQTP--RKGGRVNIKSK-AKGNKSTPQTPISTNAGSP-ITLTPSGSCRYDSSLGLLTKKFVNLIKQAKDGMLDLNKAAETLEVQKRRIYDITNVLEGIDLIEKPFKNRILWKGVDAC-PGDEDADVSVLQLQAEIENLALEEQALDNQIRQTEERLRDLSENEKNQKWLFVTEEDIKSLPGFQNQTLIAVKAPHGTTLEVPDPDEAADHPQRRYRIILRSTMGPIDVYLVSEFEGKFEDTNGSGAAPPACLPIASSSGSTGHHDIEALTVDNPETAIVSHDHPHPQPGDTSDLNYLQEQVGGMLKITPSDVENDESDYWLLSNAEISMTDIWKTDSGIDW--------DYGI 462

[Close]

BLAST of Cs6g12520.1 vs. DB:SwissProt
Match: E2FC_ARATH (Transcription factor E2FC OS=Arabidopsis thaliana OX=3702 GN=E2FC PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 2.882e-76
Identity = 142/279 (50.90%), Postives = 177/279 (63.44%), Query Frame = 1

Query:  397 CRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEIHGAEAEAPPNLPSNSGFNENQTATVITEESRGKEIEVQEQDSQRICTDLSSSQDFVSGIMKIVPSEVDSDADYWLLSDAGVSITDIW 1233
            CRYDSSLGLLTKKF+ LI+ AEDG LDLN  A  LEVQKRRIYDITNVLEGIGLIEK  KN I+WKG D     +  +  S L++EVES+  +E RLD+ IR  QE LR L ED+  ++++F+TE+DI SLP FQN+TL+AIKAP  + +EVPDPDE + +PQ +YR+V+RS MGPIDVYL+S+++       G  AE    L    G   +Q A V                      D  S        +KIV S+ D  ADYW  SDA VS+TD+W
Sbjct:  154 CRYDSSLGLLTKKFVKLIQEAEDGTLDLNYCAVVLEVQKRRIYDITNVLEGIGLIEKTTKNHIRWKGADNLGQKDLGDQISRLKSEVESMQSEESRLDDLIRERQEALRSLEEDDYCRRYMFMTEEDITSLPRFQNQTLLAIKAPTASYIEVPDPDE-MSFPQ-QYRMVIRSRMGPIDVYLLSKYK-------GDSAETSDKL----GNESDQKAPV--------------------GVDTPS--------LKIVTSDTDLKADYWFESDAEVSLTDLW 391

[Close]

BLAST of Cs6g12520.1 vs. DB:SwissProt
Match: E2F5_RAT (Transcription factor E2F5 (Fragment) OS=Rattus norvegicus OX=10116 GN=E2f5 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.890e-50
Identity = 96/188 (51.06%), Postives = 131/188 (69.68%), Query Frame = 1

Query:  391 GPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEV-QKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDV-SRPGEADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQ 948
            G  R++ SLGLLT KF++L++ A+DG+LDL  AADTL V QKRRIYDITNVLEGI LIEKK KN IQWKG+       E  +    L+AE+E L ++ER LD+Q   +Q+ ++++ ED  N ++ +VT +DI S  CF  +TL+AI+AP GT LEVP P E     Q++Y+I L+S  GPI V L+++
Sbjct:    2 GSSRHEKSLGLLTTKFVSLLQEAQDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAGCNTKEVIDRLRCLKAEIEDLELKERELDQQKLWLQQSIKNVMEDSINNRFSYVTHEDICS--CFNGDTLLAIQAPSGTQLEVPIP-EMGQNGQKKYQINLKSHSGPIHVLLINK 186

[Close]

BLAST of Cs6g12520.1 vs. DB:SwissProt
Match: E2F5_MOUSE (Transcription factor E2F5 OS=Mus musculus OX=10090 GN=E2f5 PE=1 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 3.080e-50
Identity = 95/188 (50.53%), Postives = 131/188 (69.68%), Query Frame = 1

Query:  391 GPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEV-QKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDV-SRPGEADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQ 948
            G  R++ SLGLLT KF++L++ A+DG+LDL  AADTL V QKRRIYDITNVLEGI LIEKK KN IQWKG+       E  +    L+AE+E L ++ER LD+Q   +Q+ ++++ ED  N ++ +VT +DI +  CF  +TL+AI+AP GT LEVP P E     Q++Y+I L+S  GPI V L+++
Sbjct:   37 GSSRHEKSLGLLTTKFVSLLQEAQDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAGCNTKEVIDRLRCLKAEIEDLELKERELDQQKLWLQQSIKNVMEDSINNRFSYVTHEDICN--CFHGDTLLAIQAPSGTQLEVPIP-EMGQNGQKKYQINLKSHSGPIHVLLINK 221

[Close]

BLAST of Cs6g12520.1 vs. DB:SwissProt
Match: E2F3_MOUSE (Transcription factor E2F3 OS=Mus musculus OX=10090 GN=E2f3 PE=1 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 4.274e-49
Identity = 105/242 (43.39%), Postives = 143/242 (59.09%), Query Frame = 1

Query:  358 LGSPGNNLTPTGP---CRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEIHGAEAEAPPNLP---------SNSGFNENQTATV 1047
            L SP +  TP  P    RYD+SLGLLTKKFI L+  + DG+LDLNKAA+ L+VQKRRIYDITNVLEGI LI+KK KN +QW G  +S  G        L  EV  L+ +E++LDE I+     L+ L+ED  NQ+  +VT  DI+ +   +++T+I +KAP  T LEVPD  E++       +I L ST GPI+VYL  +  E    +     +   N+P         +NSG ++   +T 
Sbjct:  153 LRSPDSPKTPKSPSEKTRYDTSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDITNVLEGIHLIKKKSKNNVQWMGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAPPETRLEVPDSIESL-------QIHLASTQGPIEVYLCPEETETHRPMKTNNQDHNGNIPKPTSKDLASNNSGHSDCSVSTA 387

[Close]

BLAST of Cs6g12520.1 vs. DB:SwissProt
Match: E2F3_HUMAN (Transcription factor E2F3 OS=Homo sapiens OX=9606 GN=E2F3 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.442e-49
Identity = 98/198 (49.49%), Postives = 128/198 (64.65%), Query Frame = 1

Query:  358 LGSPGNNLTPTGP---CRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLV 942
            L SP +  TP  P    RYD+SLGLLTKKFI L+  + DG+LDLNKAA+ L+VQKRRIYDITNVLEGI LI+KK KN +QW G  +S  G        L  EV  L+ +E++LDE I+     L+ L+ED  NQ+  +VT  DI+ +   +++T+I +KAP  T LEVPD  E++       +I L ST GPI+VYL 
Sbjct:  161 LRSPDSPKTPKSPSEKTRYDTSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDITNVLEGIHLIKKKSKNNVQWMGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAPPETRLEVPDSIESL-------QIHLASTQGPIEVYLC 351

[Close]

BLAST of Cs6g12520.1 vs. DB:SwissProt
Match: E2F5_HUMAN (Transcription factor E2F5 OS=Homo sapiens OX=9606 GN=E2F5 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.056e-48
Identity = 93/185 (50.27%), Postives = 130/185 (70.27%), Query Frame = 1

Query:  400 RYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEV-QKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDV-SRPGEADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQ 948
            R++ SLGLLT KF++L++ A+DG+LDL  AADTL V QKRRIYDITNVLEGI LIEKK KN IQWKG+       E  +    L+AE+E L ++ER LD+Q   +Q+ ++++ +D  N ++ +VT +DI +  CF  +TL+AI+AP GT LEVP P E     Q++Y+I L+S  GPI V L+++
Sbjct:   50 RHEKSLGLLTTKFVSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAGCNTKEVIDRLRYLKAEIEDLELKERELDQQKLWLQQSIKNVMDDSINNRFSYVTHEDICN--CFNGDTLLAIQAPSGTQLEVPIP-EMGQNGQKKYQINLKSHSGPIHVLLINK 231

[Close]

BLAST of Cs6g12520.1 vs. DB:SwissProt
Match: E2F4_HUMAN (Transcription factor E2F4 OS=Homo sapiens OX=9606 GN=E2F4 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 2.106e-47
Identity = 97/188 (51.60%), Postives = 133/188 (70.74%), Query Frame = 1

Query:  400 RYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEV-QKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPG----EADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQ 948
            R++ SLGLLT KF++L++ A+DG+LDL  AADTL V QKRRIYDITNVLEGIGLIEKK KN IQWKG+    PG    E  +    L+AE+E L  +E+ LD+    +Q+ +R+++ED  N    +VT +DI    CF  +TL+AI+AP GT+LEVP P E ++  Q++Y+I L+S  GPI+V LV++
Sbjct:   17 RHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVG---PGCNTREIADKLIELKAEIEELQQREQELDQHKVWVQQSIRNVTEDVQNSCLAYVTHEDICR--CFAGDTLLAIRAPSGTSLEVPIP-EGLNG-QKKYQIHLKSVSGPIEVLLVNK 197

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BLAST of Cs6g12520.1 vs. DB:SwissProt
Match: E2F4_MOUSE (Transcription factor E2F4 OS=Mus musculus OX=10090 GN=E2f4 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.489e-47
Identity = 97/188 (51.60%), Postives = 133/188 (70.74%), Query Frame = 1

Query:  400 RYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEV-QKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPG----EADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQ 948
            R++ SLGLLT KF++L++ A+DG+LDL  AADTL V QKRRIYDITNVLEGIGLIEKK KN IQWKG+    PG    E  +    L+AE+E L  +E+ LD+    +Q+ +R+++ED  N    +VT +DI    CF  +TL+AI+AP GT+LEVP P E ++  Q++Y+I L+S  GPI+V LV++
Sbjct:   17 RHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVG---PGCNTREIADKLIELKAEIEELQQREQELDQHKVWVQQSIRNVTEDVQNSCLAYVTHEDICR--CFAGDTLLAIRAPSGTSLEVPIP-EGLNG-QKKYQIHLKSMSGPIEVLLVNK 197

The following BLAST results are available for this feature:

BLAST of Cs6g12520.1 vs. DB:SwissProt

BLAST of Cs6g12520.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
E2FB_ARATH	1.555e-171	60.94	Transcription factor E2FB OS=Arabidopsis thaliana ...	[more]
E2FA_ARATH	2.001e-145	54.88	Transcription factor E2FA OS=Arabidopsis thaliana ...	[more]
E2FC_ARATH	2.882e-76	50.90	Transcription factor E2FC OS=Arabidopsis thaliana ...	[more]
E2F5_RAT	1.890e-50	51.06	Transcription factor E2F5 (Fragment) OS=Rattus nor...	[more]
E2F5_MOUSE	3.080e-50	50.53	Transcription factor E2F5 OS=Mus musculus OX=10090...	[more]
E2F3_MOUSE	4.274e-49	43.39	Transcription factor E2F3 OS=Mus musculus OX=10090...	[more]
E2F3_HUMAN	9.442e-49	49.49	Transcription factor E2F3 OS=Homo sapiens OX=9606 ...	[more]
E2F5_HUMAN	3.056e-48	50.27	Transcription factor E2F5 OS=Homo sapiens OX=9606 ...	[more]
E2F4_HUMAN	2.106e-47	51.60	Transcription factor E2F4 OS=Homo sapiens OX=9606 ...	[more]
E2F4_MOUSE	3.489e-47	51.60	Transcription factor E2F4 OS=Mus musculus OX=10090...	[more]

InterPro

Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 212..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 427..458
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..131
None	No IPR available	PANTHER	PTHR12081:SF72	SUBFAMILY NOT NAMED	coord: 9..454
IPR003316	E2F/DP family, winged-helix DNA-binding domain	SMART	SM01372	E2F_TDP_2	coord: 134..199 e-value: 9.2E-35 score: 131.5
IPR003316	E2F/DP family, winged-helix DNA-binding domain	PFAM	PF02319	E2F_TDP	coord: 136..199 e-value: 1.7E-24 score: 85.5
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 128..202 e-value: 1.2E-29 score: 103.6
IPR032198	E2F transcription factor, CC-MB domain	PFAM	PF16421	E2F_CC-MB	coord: 215..314 e-value: 6.2E-36 score: 122.6
IPR032198	E2F transcription factor, CC-MB domain	CDD	cd14660	E2F_DD	coord: 210..316 e-value: 2.59349E-50 score: 164.228
IPR015633	E2F Family	PANTHER	PTHR12081	TRANSCRIPTION FACTOR E2F	coord: 9..454
IPR037241	E2F-DP heterodimerization region	SUPERFAMILY	144074	E2F-DP heterodimerization region	coord: 212..316
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 134..197

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
protein sequence
mRNA from alignment at chr6:14149209..14155617-
coding sequence from alignment at chr6:14149209..14155617-

mRNA sequence

>Cs6g12520.1_Hzau_Valencia_v1.0 ID=Cs6g12520.1_Hzau_Valencia_v1.0; Name=Cs6g12520.1; organism=Citrus sinensis; type=mRNA; length=1622bp
TTCTCTCTCTTTCTATCTCCCGCTTTTTTTATTTTCCTTCTAACCAAACA
CCCTTCTCCAGATCTCTCCCCTCATCCCCTCCAATTTCTCCTGTCCAATT
CCTTACGATTACTTCCACTACATCGCTCTTTGATCTGCTTTGCTGTCTTT
AAAATCCCCAAACCCTCACAAAATTAAAAAAAAATAATTATTAAAATTTC
GTTTTTGTTTTATTTGAATTTGTATTTGTATTTTTTAAATTGGAGATGTC
GAATTCTCAAACGCCGCAGGACAGTTCCGCGTTTAAGCGGCAGCTCCCGT
TTTCGGCTATGAAGCCGCCGTTTTTAGCTCCCGGTGGTGATTATCACCGC
TTCGCGGCCGAGCCTCACCGCCTACCCGATCAGGAAGCCGAGGCCATCGT
TGTTAAATCTCCTCAATTAAAGCGAAAGAGTGACACAGCAGATCACGATG
CTGAGTCAAGTGAGAAGACTACTGGTCCTGGATACACTGAAATAGTTAAC
AGCCCTCTTCAGACACCTGTATCAGGAAAAGGAGGAAAGGCACAAAAAAC
ATCAAGGCTTGCGAAGAATAGTAAAATTGGACCACAGATTTCTGCTTCTA
ATCTTGGTTCTCCTGGCAATAATCTCACACCGACTGGTCCCTGCCGATAT
GACAGCTCTCTTGGGCTTCTGACAAAGAAGTTCATCAATTTGATCAAACA
CGCTGAAGATGGTATTCTTGATCTGAATAAAGCTGCTGACACTTTAGAGG
TGCAAAAGAGACGCATTTATGACATAACAAATGTCCTAGAAGGTATTGGT
CTCATAGAAAAGAAGCTCAAGAACAGAATTCAGTGGAAGGGACTTGATGT
ATCAAGGCCTGGGGAGGCTGATGAAAATGCTTCGAGTTTACAGGCAGAAG
TGGAGAGCCTTACTATTCAAGAGCGCCGATTAGATGAACAAATAAGAATA
ATGCAAGAGCGATTGAGGGATCTTAGCGAAGATGAAAATAATCAGAAGTG
GCTTTTTGTCACGGAAGATGATATCAAGAGCTTACCCTGCTTCCAGAATG
AAACCTTGATAGCTATAAAAGCTCCACATGGCACCACTCTGGAAGTCCCA
GATCCTGATGAGGCTGTTGACTATCCCCAGAGAAGATACAGAATAGTTCT
CAGAAGTACAATGGGTCCTATAGATGTTTACCTTGTCAGTCAATTTGAAG
AAAAATTTGAGGAGATACATGGTGCAGAAGCAGAGGCACCTCCAAACTTG
CCATCAAATTCGGGCTTTAATGAGAACCAGACAGCAACAGTGATAACAGA
GGAGAGCAGAGGCAAGGAAATTGAAGTGCAAGAGCAAGATTCTCAAAGAA
TTTGCACAGATCTTAGTTCCTCTCAGGACTTTGTGAGTGGGATCATGAAG
ATTGTTCCCTCAGAAGTCGATAGTGATGCAGATTACTGGCTTTTATCAGA
TGCTGGAGTTAGCATCACAGACATTTGGCGAACTGAACCTGGGGTGGAAT
GGAATGATTTGGGTACACTTCAAGAGGATTATGGCATGCCTACTGTCAGC
ACACCACAGCCCCAAACTCCACCATCCAATACTGCAGAAGCGCCACCTGC
TGCTGCTAATACTGGAAGGTGA

protein sequence of Cs6g12520.1

>Cs6g12520.1_Hzau_Valencia_v2.0-protein ID=Cs6g12520.1_Hzau_Valencia_v2.0-protein; Name=Cs6g12520.1; organism=Citrus sinensis; type=polypeptide; length=459bp
MSNSQTPQDSSAFKRQLPFSAMKPPFLAPGGDYHRFAAEPHRLPDQEAEA
IVVKSPQLKRKSDTADHDAESSEKTTGPGYTEIVNSPLQTPVSGKGGKAQ
KTSRLAKNSKIGPQISASNLGSPGNNLTPTGPCRYDSSLGLLTKKFINLI
KHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGL
DVSRPGEADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQ
KWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRI
VLRSTMGPIDVYLVSQFEEKFEEIHGAEAEAPPNLPSNSGFNENQTATVI
TEESRGKEIEVQEQDSQRICTDLSSSQDFVSGIMKIVPSEVDSDADYWLL
SDAGVSITDIWRTEPGVEWNDLGTLQEDYGMPTVSTPQPQTPPSNTAEAP
PAAANTGR*

protein sequence of Cs6g12520.1_Hzau_Valencia_v1.0

>Cs6g12520.1_Hzau_Valencia_v1.0 ID=Cs6g12520.1_Hzau_Valencia_v1.0; Name=Cs6g12520.1_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=459bp
MSNSQTPQDSSAFKRQLPFSAMKPPFLAPGGDYHRFAAEPHRLPDQEAEA
IVVKSPQLKRKSDTADHDAESSEKTTGPGYTEIVNSPLQTPVSGKGGKAQ
KTSRLAKNSKIGPQISASNLGSPGNNLTPTGPCRYDSSLGLLTKKFINLI
KHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGL
DVSRPGEADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQ
KWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRI
VLRSTMGPIDVYLVSQFEEKFEEIHGAEAEAPPNLPSNSGFNENQTATVI
TEESRGKEIEVQEQDSQRICTDLSSSQDFVSGIMKIVPSEVDSDADYWLL
SDAGVSITDIWRTEPGVEWNDLGTLQEDYGMPTVSTPQPQTPPSNTAEAP
PAAANTGR*

mRNA from alignment at chr6:14149209..14155617-

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=6409bp; location=Sequence derived from: chr6:14149209..14155617- (Citrus sinensis
TTCTCTCTCTTTCTATCTCCCGCTTTTTTTATTTTCCTTCTAACCAAACA
CCCTTCTCCAGATCTCTCCCCTCATCCCCTCCAATTTCTCCTGTCCAATT
CCTTACGATTACTTCCACTACATCGCTCTTTGATCTGCTTTGCTGTCTTT
AAAATCCCCAAACCCTCACAAAATTAAAAAAAAATAATTATTAAAATTTC
GTTTTTGTTTTATTTGAATTTGTATTTGTATTTTTTAAATTGGAGATGTC
GAATTCTCAAACGCCGCAGGACAGTTCCGCGTTTAAGCGGCAGCTCCCGT
TTTCGGCTATGAAGCCGCCGTTTTTAGCTCCCGGTGGTGATTATCACCGC
TTCGCGGCCGAGCCTCACCGCCTACCCGATCAGGAAGCCGAGGCCATCGT
TGTTAAATCTCCTGTGAGTTTTCTCTTTTCAAGTTGTTTCTATTTTTTAA
TTTTCTGTTTTTGCCTGTGTTTTACTTTTTTGGGGTTCTGTGTTACTTAG
CAATTTTAAAGTTGTGGTTTATGTTTTAAGTGTAATTGCGAGTTAGTGGT
ATGTGTTGTGTTAATTGTATGAGGATCTGGTTCTTTAGTGATTAAACTTG
TGAATTTAGGATATTGGGTTGGTGACATTACTGATAAGAATTAGTTCTTG
GTGACTGTTAGATTTGTTGCTGGGCAGTGATTGTTTGTTCATCTGATAAG
AATATCTGTTTGGTTGTGCTGATTTTTGGGAGTTCCGGTGCCTTTTTGAC
TATTGTCTTTACCAAGTTTTCTTTCATTAATGGTGGCTTAGTGGGTTTGT
TTAATATGTTGTATGTTAAGCTGCAGCAGATTTGGAGTCGTATGAATTTA
GATGTCAATTGGGTGATTGTTTGTGTTTTTATTCTTGGTTTTGTATGTGA
ATCAGAGTGCTAATCAGGATTGATCTCGACCGTTTATTTGTGCCTGGTGT
TGACGGTTTCTGAGTATCAGTGTAGTCAGAAGAGGGAAAGGGAATGACCT
ATTTTGTCATGAAATTACTAGTTTGACTTTTCATTTATTTGATTGCCTGT
TCTTTGGCTTGTCATTATGAACTTTTGGATGTTGTGAATTTGACTGACAG
CATTCCCTGTAGTGTGTTAATCTCTTTTGTCTTTTTAATGGATCTGGATT
TAGTTGACCTATGCCTTCATGAGTGTCAGTCAACTGTTTGTTGGGACCCT
AGTAAATAAAGAAAAAAGTCTTCTCTTTGCCATTGAGGGTAAAAGGGGAT
TAATAGCAAAGCATCAAGTATTTTCACGCTCTGATCTTTCACAGTTGGCT
GTTGTTACTTATTGCACTCTTACAGGTTCAGAATTTTGTTTCATGCTTAA
TAGCATCTCTCCATATTTTGATATATCACTTGTTATTCTTCAAGTAAAAT
GTAAAACACATAAGAAACAAGGAACTTATGCATGGCTAAGCTTAGTTTCA
GTTTCTGCTTCTACTCTTTCCTCATAATGTTAAATAGTTGCCAATTTCAG
TTGTTTGATAATATGCATAGTTTGGAAGTTTATGTCTATTGTCTAGGTAC
CCTCAGAAAAGCTTCCACTAGCAAAGAAAAAGCCTACTGAGTTCCCATTT
AGGCTTAAAGTTTACAGTCTCGAATCTTTTTTAGTCTCAAGTGCTTGTGT
ATTCTTATGGCATAAAAATTGATTTGTGTAGCATACCAAATCTGGGACGT
TGCTAATGTTTTAACTTTAAAGAATCTTACAGTGGGCACAACTGAGATAG
TGACCAACATTGATTTCATGAAGCAATGCTGTCATTGGTTAATATGGTTA
GATTTTAGGTTGCATGTTTGCAGGTAGTTCTTAGTCCATCATTCGCTTAT
GTTGTGAAAAATTATTTAATTAGGAAGGAAAATGATGAGCTATATGCATA
AAATGTTAGAGTATGTTCCAGTAACTTTCTAATGAGTGCTATAGAAGTTT
GTGCCGCATTGTAGACTTGATATACATGCCATAGATTTTCTGGTTCTTAA
CTAATAATACAGGAGCCCAAATTTGAAACATTGATGTTGGATATGTAATT
AAGTAGTTAAAAGCATGTGATCAATCTTCTATCTTGTCATATGGACTTTC
TTAAAAATGACACAGAGTTGTGACTATTTACTTTGCCATAGTACAATGAT
GCAGTGAGAGAAGCTGTATTTATCATGGAGTATTTCACCAGGGGAAATGG
TTAACAATAAAGTTTGACCTCATTAAATGGTGCCAGAGAGGTGGTACTGT
GAATGACTAAATTGTTGAAACTTAAAGGATGGTGAGCATGCATCTTCGTG
TTTTCTTCTCATTGAATATGGAAAGATCGAGATTTTACAGATAAGATACC
ATACATAGTGCATGATTTAGGTTATGCTAGGTGTGTTGCAGTTCTTTGTT
TTATTTAAACAAATGGTTTGGATATTTTCCCCTGTTTTTGGGTGGGAATA
TGCTTAGGATTTCCAATTGTATGTATGTGATGAGATAGGAAAAGATTTGA
TCTTCTTTGTGTCATTGTCCATCTCCTTTCAATTCAGGTGGTTGTATGTT
CTAGAGTCTAGTCTAGAGTGTGAAAAAAAGGCTATTAACTGGAGTTGGTT
TCTCTTGACTGAAATCCTGTACTTGGCTCAGCTTATGTGTGTGTTCTATA
TGATTCTTTTAATTTGCTTTCCTTAATTTTCATGCTTTTCTTTTGGATTA
ACCATGCACTGAAATTTATTTGCTCATTTTGCTTATTGTGGTTTGCAAAA
CTGATTGGTTCTTTTAGCAATTAAAGCGAAAGAGTGACACAGCAGATCAC
GATGCTGAGTCAAGTGAGAAGACTACTGGTCCTGGATACACTGAAATAGT
TAACAGCCCTCTTCAGACACCTGTATCAGGAAAAGGAGGAAAGGCACAAA
AAACATCAAGGCTTGCGAAGAATAGTAAAATTGGACCACAGATTTCTGCT
TCTAATCTTGGTGAGTACCACTGCTTAAATCTTGTGTAGGAAGTTCTCTG
CTTAATTCTGCAATAGATTAACTATAGGCTGGTATCAAACTGGAAAATCG
GTTGTTGCCACCTTAGTATTTGCAGAAACAGGCTTATTTTCTGTTGACAC
CAGCAGGACATAAGGAAACAAAAGTTAATAGATTTGATGAGAAAAACTCT
TTATTTGACAGGTTCTCCTGGCAATAATCTCACACCGACTGGTCCCTGCC
GATATGACAGCTCTCTTGGTAATTGTTTATTCCATATTCATTTGTTTGTT
CTTTTATATTTTATTTTTAGATGAAACAAGGTTTCTCTTCTCAAAGCTTG
ATTCATACCTTGTGGAACAGAGAAATTACCTAACAATTTTGTTTACTGTA
TTCCAGGGCTTCTGACAAAGAAGTTCATCAATTTGATCAAACACGCTGAA
GATGGTATTCTTGATCTGAATAAAGCTGCTGACACTTTAGAGGTGACTGT
TTTACTTGTTAAATTAATCCCTCCCTATATGATAACTTTCAGTTACTAGA
AGGTTCTCCCTTGCCACAGGTGCAAAAGAGACGCATTTATGACATAACAA
ATGTCCTAGAAGGTATTGGTCTCATAGAAAAGAAGCTCAAGAACAGAATT
CAGTGGAAGTATGGACACAGAATGATTTTTAACCTTGATGTCGTTTGTGA
TTGTTTAACTATCTTAGTTTCTTAATCTTTGTTAACCTGTACCCTCTTCA
ATGTTAGGGGACTTGATGTATCAAGGCCTGGGGAGGCTGATGAAAATGCT
TCGAGTTTACAGGTATATAAATTTCCAAAATCTTGGCTTGAAAGGTCTTG
GAAAACTTTGCTAAATCAGCCCTAAAATCTTCTTAACAACTTTCAATACT
CTATTCGTCTTCAACACTTCGTTTTTAAATTTGTTTCCTAAAATTATCAT
ATAACCTCTATTGCTACCACTACCACCACAATAAAATAACTGGTGCAGTG
ATATTTATGTTACTTTAGACAGTACTCCCTTACACAGGTTTTAGTGGATG
TTACTTTATTGGATTTAATTAATTACAAAATAGTTCTTTTTTCCCCCTCC
CTACTCTTCAGATTTCAAACATTTTGTTATACCATATGAGTAGCAAAGCA
TTAGAAATTTCCACTTGCGAATTCTCATTTTTCAGCCCTAAGCTTCCAAT
TTCATTTGATAGCTTCTTTGGCTTTGCAGAGTTCTTCATTTTTTCTTTAT
TCTCTTCATTTTTTTTTCTTTGTTTAGTTATCAATATGACTTTAATCAAA
ATAAATGTGATTTTGCAGACAAACTCGATAATTCCCTGTGTCGACTAGTT
AGCATGGGAACAAGAAACTTTGCCAACTAGTTAGTGTAGGAACAAGAAAC
TTTCCCCTCATGTCAACCCTCAAGCCAATCTTCTGTTGTAGTTTCTTTAT
CTTATTTATTTCCTGCTGACAATACTAACGATGATGAGCAATTAAATAGG
ATTTGCTCATTCAAGCCCAAATAGTTAGGACGAGACTTCCCGAGTTGCAT
CTGGTTGGTTATGCATGTACTGATAGTGATGGATCATTCACAGTTCCTGT
GGTCAATTAGCAGAATATTAACAAAAATATGGTTGGGAAATTGGGAATTC
CAGGATTTGACTTAATCAACTCTTTCTTTTCTGGCAGGCAGAAGTGGAGA
GCCTTACTATTCAAGAGCGCCGATTAGATGAACAAATAAGGTTATGCAGT
CACGTTTTTTATTCCTCTCTTTAACACTGCTTATTTGCAACCATTAGTTT
GCTCTGACGTTTCCAACTTCTTGCAGAATAATGCAAGAGCGATTGAGGGA
TCTTAGCGAAGATGAAAATAATCAGAAGTACTTTCCTTTTCCTTTTACCC
ATTACAAATTATTAGCAACTTACAATTGTTTATTAATTGATCAGCCAATG
ATTTAATATTTTATGATCTTAGGTGGCTTTTTGTCACGGAAGATGATATC
AAGAGCTTACCCTGCTTCCAGGTTAACTTTTTCGTTTGTCAGGCTGGCAC
TTGTGTTTTAGAGTTGGTGGTTGTATGATCGACGTACATCCTGAAAACAG
AATTTCTTGATTGTATGTAGTGAATTGAGTATGGTTCAATTGTTTCCTGC
AGAATGAAACCTTGATAGCTATAAAAGCTCCACATGGCACCACTCTGGAA
GTCCCAGATCCTGATGAGGTAAACCCAAAAGCATGCAAAAGGCAAGGAAA
GTTCATTTGCTTTTGTATGTGCAGATTCTGATTTTTCATCCTTTCCTTTC
CAGGCTGTTGACTATCCCCAGAGAAGATACAGAATAGTTCTCAGAAGTAC
AATGGGTCCTATAGATGTTTACCTTGTCAGGTACAGTTACTTCTTATTGG
TTAAGAACAATGACCACTCAAAGCAGTTTTTGGAGGCCCTCTCATTCTGT
CCTTGTCTCTCTGTCATTCTAGTCAATTTGAAGAAAAATTTGAGGAGATA
CATGGTGCAGAAGCAGAGGCACCTCCAAACTTGCCATCAAATTCGGGCTT
TAATGAGAACCAGACAGCAACAGTGATAACAGAGGAGAGCAGAGGCAAGG
AAATTGAAGTGCAAGAGCAAGATTCTCAAAGAATTTGCACAGATCTTAGT
TCCTCTCAGGACTTTGTGAGTGGGATCATGAAGATTGTTCCCTCAGAAGT
CGATGTAAGTTTATGTTCTTGCTTGGGTTCTGTATTATTGCTTTCAGGAA
GATAGAATCTAGCCAGTTACAAGTGATTTTGTCTTTATAAGCACAAGCAG
CATGCTTCAGTTTTCCAGTTATCTGAAAATTGTACATGCTTCAGTTTAAG
CTGAACTCCTAAGGCCTAGGCATTCAAGTGACATAATTCTCATTTAGAAA
AAAACATCCTTCACAATCATTTCAAGTGACTCGGGTGGGGTTAAGCTGTT
TATGTAGTTCCAGGTTTAAATCTTAATGATAAAATAACCAGGAAACAGGG
TTTACTTTTGAAACAAAATCATTCTTGGACAAATAGTTTATACAGGTGTA
ACTTGAAAATTTCTATGCTATATTGTCAAAGAAAGGAGTTATACTAATTA
CAAGCATTCATTTTATCTGGTTGACTTTGCAGAGTGATGCAGATTACTGG
CTTTTATCAGATGCTGGAGTTAGCATCACAGACATTTGGCGAACTGAACG
TATCCTTTTCATTAACATGTTTCAATCATTATTTCTTCCCACACACCCCC
CGCCCCCTTTTTTCCCCTTTTGCTACATAATATCTTTGAGCAAAAAATAA
ATGCCAAACTTGACTCACCTAATAGCTGGGGTGGAATGGAATGATTTGGG
TACACTTCAAGAGGATTATGGCATGCCTACTGTCAGCACACCACAGCCCC
AAACTCCACCATCCAATACTGCAGAAGCGCCACCTGCTGCTGCTAATACT
GGAAGGTGA

Coding sequence (CDS) from alignment at chr6:14149209..14155617-

>Cs6g12520.1_Hzau_Valencia_v1.0 ID=Cs6g12520.1_Hzau_Valencia_v1.0; Name=Cs6g12520.1; organism=Citrus sinensis; type=CDS; length=1377bp; location=Sequence derived from: chr6:14149209..14155617- (Citrus sinensis
ATGTCGAATTCTCAAACGCCGCAGGACAGTTCCGCGTTTAAGCGGCAGCT
CCCGTTTTCGGCTATGAAGCCGCCGTTTTTAGCTCCCGGTGGTGATTATC
ACCGCTTCGCGGCCGAGCCTCACCGCCTACCCGATCAGGAAGCCGAGGCC
ATCGTTGTTAAATCTCCTCAATTAAAGCGAAAGAGTGACACAGCAGATCA
CGATGCTGAGTCAAGTGAGAAGACTACTGGTCCTGGATACACTGAAATAG
TTAACAGCCCTCTTCAGACACCTGTATCAGGAAAAGGAGGAAAGGCACAA
AAAACATCAAGGCTTGCGAAGAATAGTAAAATTGGACCACAGATTTCTGC
TTCTAATCTTGGTTCTCCTGGCAATAATCTCACACCGACTGGTCCCTGCC
GATATGACAGCTCTCTTGGGCTTCTGACAAAGAAGTTCATCAATTTGATC
AAACACGCTGAAGATGGTATTCTTGATCTGAATAAAGCTGCTGACACTTT
AGAGGTGCAAAAGAGACGCATTTATGACATAACAAATGTCCTAGAAGGTA
TTGGTCTCATAGAAAAGAAGCTCAAGAACAGAATTCAGTGGAAGGGACTT
GATGTATCAAGGCCTGGGGAGGCTGATGAAAATGCTTCGAGTTTACAGGC
AGAAGTGGAGAGCCTTACTATTCAAGAGCGCCGATTAGATGAACAAATAA
GAATAATGCAAGAGCGATTGAGGGATCTTAGCGAAGATGAAAATAATCAG
AAGTGGCTTTTTGTCACGGAAGATGATATCAAGAGCTTACCCTGCTTCCA
GAATGAAACCTTGATAGCTATAAAAGCTCCACATGGCACCACTCTGGAAG
TCCCAGATCCTGATGAGGCTGTTGACTATCCCCAGAGAAGATACAGAATA
GTTCTCAGAAGTACAATGGGTCCTATAGATGTTTACCTTGTCAGTCAATT
TGAAGAAAAATTTGAGGAGATACATGGTGCAGAAGCAGAGGCACCTCCAA
ACTTGCCATCAAATTCGGGCTTTAATGAGAACCAGACAGCAACAGTGATA
ACAGAGGAGAGCAGAGGCAAGGAAATTGAAGTGCAAGAGCAAGATTCTCA
AAGAATTTGCACAGATCTTAGTTCCTCTCAGGACTTTGTGAGTGGGATCA
TGAAGATTGTTCCCTCAGAAGTCGATAGTGATGCAGATTACTGGCTTTTA
TCAGATGCTGGAGTTAGCATCACAGACATTTGGCGAACTGAACCTGGGGT
GGAATGGAATGATTTGGGTACACTTCAAGAGGATTATGGCATGCCTACTG
TCAGCACACCACAGCCCCAAACTCCACCATCCAATACTGCAGAAGCGCCA
CCTGCTGCTGCTAATACTGGAAGGTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003316	E2F_WHTH_DNA-bd_dom
IPR036388	WH-like_DNA-bd_sf
IPR032198	E2F_CC-MB
IPR015633	E2F
IPR037241	E2F-DP_heterodim
IPR036390	WH_DNA-bd_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	DNA-binding transcription factor activity
GO:0046983	protein dimerization activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005667	transcription regulator complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of DNA-templated transcription