Transcript Overview
Name | Cs6g12525.1 |
Unique Name | Cs6g12525.1_Hzau_Valencia_v1.0 |
Type | mRNA |
Organism | Citrus sinensis (Sweet orange) |
Sequence length | 541 |
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Cs6g12525.1 | Cs6g12525.1_Hzau_Valencia_v2.0-protein | Citrus sinensis | polypeptide |
Cs6g12525.1_Hzau_Valencia_v1.0 | Cs6g12525.1_Hzau_Valencia_v1.0 | Citrus sinensis | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Cs6g12525.1.utr5.2 | Cs6g12525.1.utr5.2_Hzau_Valencia_v1.0 | Citrus sinensis | five_prime_UTR |
Cs6g12525.1.utr5.1 | Cs6g12525.1.utr5.1_Hzau_Valencia_v1.0 | Citrus sinensis | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Cs6g12525.1.exon.2 | Cs6g12525.1.exon.2_Hzau_Valencia_v1.0 | Citrus sinensis | exon |
Cs6g12525.1.exon.1 | Cs6g12525.1.exon.1_Hzau_Valencia_v1.0 | Citrus sinensis | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Cs6g12525.1.cds.1 | Cs6g12525.1.cds.1_Hzau_Valencia_v1.0 | Citrus sinensis | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Cs6g12525.1.utr3.1 | Cs6g12525.1.utr3.1_Hzau_Valencia_v1.0 | Citrus sinensis | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
BLAST of Cs6g12525.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 ( C. sinensis v2.0, HZAU CDS)
Total hits: 0
Match Name | E-value | Identity | Description | |
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Sequences
The
following sequences are available for this feature:
mRNA sequence >Cs6g12525.1_Hzau_Valencia_v1.0 ID=Cs6g12525.1_Hzau_Valencia_v1.0; Name=Cs6g12525.1; organism=Citrus sinensis; type=mRNA; length=541bp AATAGTTTACCCTTTTGGAAAATTAAAGAAGATAAACCTGTAAAATACTC TGTGGCTACCCTGGCCCTGTAACTTTCCCAGTCGAGCTTTCTCCATTCTT CTGGTAATCAACCACCTATCCACCGCTTCGCTAAACGCTGCACCTATTAT TACAAGCTCCGATAACGACAGCTTTTGTGTTCGAAACTAGGCAGGTAGCA TGGGGAACAAGCCTGCAGTGCCAATGACAGTAAAGCAGGAAAGGGAAGAA ATCTTGTTGAAAGTTATACCTCCCCTGGACCGTGCTTATGTCCGATGGCT TGTTCGGGATCTTGAGATGATTCATCGATTTACTTCTATAAACCCACATG CGGTAAAACCACCAGATCATTATATTGAACACATGCGCTTGTATGGAAGG TTGGATGTGGACTTGGATGATCCTGATCTTGCCCATTTGTTCAAGTAGGT CATCTTGTAATATATAGTCTGTTGTAAATGGAATATGATAATAACTTTTA AATCTCATACTCTTTTGTTGATGGCCGCAGACTAGAAAGTT back to topprotein sequence of Cs6g12525.1 >Cs6g12525.1_Hzau_Valencia_v2.0-protein ID=Cs6g12525.1_Hzau_Valencia_v2.0-protein; Name=Cs6g12525.1; organism=Citrus sinensis; type=polypeptide; length=81bp MGNKPAVPMTVKQEREEILLKVIPPLDRAYVRWLVRDLEMIHRFTSINPH AVKPPDHYIEHMRLYGRLDVDLDDPDLAHLF back to topprotein sequence of Cs6g12525.1_Hzau_Valencia_v1.0 >Cs6g12525.1_Hzau_Valencia_v1.0 ID=Cs6g12525.1_Hzau_Valencia_v1.0; Name=Cs6g12525.1_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=81bp MGNKPAVPMTVKQEREEILLKVIPPLDRAYVRWLVRDLEMIHRFTSINPH AVKPPDHYIEHMRLYGRLDVDLDDPDLAHLF back to topmRNA from alignment at chr6:14157706..14159423- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. > ID=; Name=; organism= ; type=; length=1718bp; location=Sequence derived from: chr6:14157706..14159423- (Citrus sinensis AATAGTTTACCCTTTTGGAAAATTAAAGAAGATAAACCTGTAAAATACTC
TGTGGCTACCCTGGCCCTGTAACTTTCCCAGTCGAGCTTTCTCCATTCTT
CTGGTAATCAACCACCTATCCACCGCTTCGCTAAACGCTGCACCTATTAT
TACAAGCTCCGATAACGGTAAGTTTCTTGAAAATTTTCACTCATCTTCTA
TGCTCATGCTTAGATTGTCGTTTTTTCTGTTGGTCATGAACGAAATGTGT
TTGATTTAAAGATTCGATTATATGGTGTCTCATGCTTTATGGGTTTAACA
TACATGTGGTATAATTTGAATTTGCAGTATGACAATGATCAGATTGATTG
GTTTTGCTTCAACTCATTGGATTTTATCTTTTATTTTTTTTTACTTCTTC
GAGCATAACTGCACAGTTGATTGTAGGAATGAATTTTTCATCTTAATAGG
GAGAATGGCTGCCTATAATCTTAGTTGATAGTGTATTGGTTCTTACGATG
TGTTTCTTGTTAATATGAAACGGAATGCCGGCGATTGAAACCAATTGTTC
AGTTGTTAAAAACCCACTATTTGCCAATTTGATGGTTGTTACAATCTAAT
ACTACTACAGCAGCTTCACTGGTGGGTGTTGGTCTAAATTTATGTTTCAA
AGATGATCAAATTTTTTAGGTTGATATAATGCCTTCAAATTAATGCTATA
TTGCAATTTGTAGGTGTTAAAGAGTTTCTTTTAGCATGTGTGTCAAAATA
ATGGTGCTTATTGGCCTTCTGATCCTAGGTATTGAAAGAAAATGTAGGAT
AGTCTGTGCATTTGTGTATTGTATTCTTAGTTTTTATTTGTAAGCACTAA
GCAGCTTCTGTGCAGAAATGCGTTTGATAAGTGTCTCTAGTGCTACTGGT
GAACAAATCATGTTTGCATTTTTTGGAGCTAAAATTTCTAATGCAATCTT
AAGCAAGTAGTATTTTGATTGGCTTGAAAAGAGGTTCCAGTGTTTCTAAG
TTTTGATGGTATACTAAATTTTAATGCTTGTATTTTAAGTTCTCAGACAA
TTTGAGTTCCTGCTCTCATTTAGTTGGTGGGTTAATTCGATATGTTGCTT
ATTTGAGCAATAGTTGGCTTGTCGCCTCTGATAATGTTGAGGGATTCTTG
CCATCTGAGCTTATTTTACATATAACTTGAAAGCTTCTGGTTCGTACGAA
ACTGTTATTAGGCAAGCCTTTTACAGTCACAGAGTTGTGTGTGAATAAAC
TTTTGGCAGATGCAGCAATGGTAGCTTATTCGGATAGAATTCTAGTTGTG
TATATTTTTATCTGTTTTTGAACTGATCTAACTCATTTCAGCAGACAGCT
TTTGTGTTCGAAACTAGGCAGGTAGCATGGGGAACAAGCCTGCAGTGCCA
ATGACAGTAAAGCAGGAAAGGGAAGAAATCTTGTTGAAAGTTATACCTCC
CCTGGACCGTGCTTATGTCCGATGGCTTGTTCGGGATCTTGAGATGATTC
ATCGATTTACTTCTATAAACCCACATGCGGTAAAACCACCAGATCATTAT
ATTGAACACATGCGCTTGTATGGAAGGTTGGATGTGGACTTGGATGATCC
TGATCTTGCCCATTTGTTCAAGTAGGTCATCTTGTAATATATAGTCTGTT
GTAAATGGAATATGATAATAACTTTTAAATCTCATACTCTTTTGTTGATG
GCCGCAGACTAGAAAGTT back to topCoding sequence (CDS) from alignment at chr6:14157706..14159423- >Cs6g12525.1_Hzau_Valencia_v1.0 ID=Cs6g12525.1_Hzau_Valencia_v1.0; Name=Cs6g12525.1; organism=Citrus sinensis; type=CDS; length=245bp; location=Sequence derived from: chr6:14157706..14159423- (Citrus sinensis ATGGGGAACAAGCCTGCAGTGCCAATGACAGTAAAGCAGGAAAGGGAAGA AATCTTGTTGAAAGTTATACCTCCCCTGGACCGTGCTTATGTCCGATGGC TTGTTCGGGATCTTGAGATGATTCATCGATTTACTTCTATAAACCCACAT GCGGTAAAACCACCAGATCATTATATTGAACACATGCGCTTGTATGGAAG GTTGGATGTGGACTTGGATGATCCTGATCTTGCCCATTTGTTCAA back to top
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