Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Cs6g12540.1 Cs6g12540.1_Hzau_Valencia_v2.0-protein Citrus sinensis polypeptide Cs6g12540.1_Hzau_Valencia_v1.0 Cs6g12540.1_Hzau_Valencia_v1.0 Citrus sinensis polypeptide
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g12540.1.utr5.1 Cs6g12540.1.utr5.1_Hzau_Valencia_v1.0 Citrus sinensis five_prime_UTR Cs6g12540.1.utr5.2 Cs6g12540.1.utr5.2_Hzau_Valencia_v1.0 Citrus sinensis five_prime_UTR
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g12540.1.exon.1 Cs6g12540.1.exon.1_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g12540.1.exon.2 Cs6g12540.1.exon.2_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g12540.1.exon.3 Cs6g12540.1.exon.3_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g12540.1.exon.4 Cs6g12540.1.exon.4_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g12540.1.exon.5 Cs6g12540.1.exon.5_Hzau_Valencia_v1.0 Citrus sinensis exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g12540.1.cds.1 Cs6g12540.1.cds.1_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g12540.1.cds.2 Cs6g12540.1.cds.2_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g12540.1.cds.3 Cs6g12540.1.cds.3_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g12540.1.cds.4 Cs6g12540.1.cds.4_Hzau_Valencia_v1.0 Citrus sinensis CDS
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g12540.1.utr3.1 Cs6g12540.1.utr3.1_Hzau_Valencia_v1.0 Citrus sinensis three_prime_UTR
Homology
BLAST of Cs6g12540.1 vs. DB:SwissProt
Match:
NSRP1_BOVIN (Nuclear speckle splicing regulatory protein 1 OS=Bos taurus OX=9913 GN=NSRP1 PE=2 SV=1)
HSP 1 Score: 93.5893 bits (231), Expect = 8.217e-20
Identity = 63/154 (40.91%), Postives = 91/154 (59.09%), Query Frame = 1
Query: 127 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQK--SVRRKVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFG 582
V + R+A K +A+K+ + + +KALAED V++YD YDEM++K K+ D +PKYIH L+ + RK+E + E+K+ +ER E F DKE FVT AYKKKL+E+ + + R DVTK+ D+S FY +L N A G
Sbjct: 42 VSESLQREAAKKQAMKQTKLEIQKALAEDSTVYEYDSIYDEMQKKKEESNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEERERRAAALEARLDVTKQRDLSGFYRHL-LNQAVG 194
BLAST of Cs6g12540.1 vs. DB:SwissProt
Match:
NSRP1_HUMAN (Nuclear speckle splicing regulatory protein 1 OS=Homo sapiens OX=9606 GN=NSRP1 PE=1 SV=1)
HSP 1 Score: 91.2781 bits (225), Expect = 5.569e-19
Identity = 62/154 (40.26%), Postives = 90/154 (58.44%), Query Frame = 1
Query: 127 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFG 582
V + R+A K +A+K+ + + +KALAED V++YD YDEM++K K+ D +PKYIH L+ + RK+E + E+K+ +ER E F DKE FVT AYKKKL+E+ + + DVTK+ D+S FY +L N A G
Sbjct: 41 VSESLQREAAKKQAMKQTKLEIQKALAEDATVYEYDSIYDEMQKKKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHL-LNQAVG 193
BLAST of Cs6g12540.1 vs. DB:SwissProt
Match:
NSRP1_DANRE (Nuclear speckle splicing regulatory protein 1 OS=Danio rerio OX=7955 GN=nsrp1 PE=1 SV=2)
HSP 1 Score: 90.1225 bits (222), Expect = 1.335e-18
Identity = 57/144 (39.58%), Postives = 89/144 (61.81%), Query Frame = 1
Query: 139 ISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSV--RRKVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQ----RWAREQALRDLRDERDDVTKKTDVSDFY 552
+ ++AIK + +K+ + +KAL ED V++YD YD+++++ + +K+ D +PKYI++L+ +ERK+E + ERK+ KER E FADKE FVT AY++KL+E+Q R RE L DV K+ D+S FY
Sbjct: 43 LQKEAIKKKMMKQTRLEMQKALEEDSTVYEYDNVYDDIQKQRLESNKKLLGGEDKKPKYINQLLRAVEERKKEQERRDERKIQKEREAEGEKFADKEAFVTSAYRQKLKERQEELEREKREAELEAAL----DVKKQKDLSGFY 182
BLAST of Cs6g12540.1 vs. DB:SwissProt
Match:
NSRP1_MOUSE (Nuclear speckle splicing regulatory protein 1 OS=Mus musculus OX=10090 GN=Nsrp1 PE=1 SV=1)
HSP 1 Score: 86.6557 bits (213), Expect = 1.650e-17
Identity = 63/154 (40.91%), Postives = 91/154 (59.09%), Query Frame = 1
Query: 127 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFG 582
V + R+A K +A+K+ + + +KALAED V++YD YDEM++K K+ D +PKYIH L+ + RK+E + E+K+ +ER E+ F DKE FVT AYKKKLEE+ + + DVTK+ D+S FY +L N A G
Sbjct: 40 VSESLQREAAKKQAMKQTKLEIQKALAEDSTVYEYDSVYDEMQKKKEENNPKLLPGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMENGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEAHLDVTKQKDLSGFYRHL-LNQAVG 192
BLAST of Cs6g12540.1 vs. DB:SwissProt
Match:
NSRP1_RAT (Nuclear speckle splicing regulatory protein 1 OS=Rattus norvegicus OX=10116 GN=Nsrp1 PE=1 SV=1)
HSP 1 Score: 86.2705 bits (212), Expect = 2.748e-17
Identity = 63/154 (40.91%), Postives = 91/154 (59.09%), Query Frame = 1
Query: 127 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFG 582
V + R+A K +A+++ + + +KALAED V++YD YDEM++K K+ D +PKYIH L+ + RK+E + E+K+ +ER E F DKE FVT AYKKKLEE+ + + R DVTK+ D+S FY +L N A G
Sbjct: 40 VSESLQREAAKKQAMRQTKLEIQKALAEDSTVYEYDSIYDEMQKKKEENNPKLLMGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEARLDVTKQKDLSGFYRHL-LNQAVG 192
BLAST of Cs6g12540.1 vs. DB:SwissProt
Match:
NSRP1_CAEBR (Nuclear speckle splicing regulatory protein 1 homolog OS=Caenorhabditis briggsae OX=6238 GN=ccdc-55 PE=3 SV=1)
HSP 1 Score: 67.0106 bits (162), Expect = 4.372e-11
Identity = 48/120 (40.00%), Postives = 66/120 (55.00%), Query Frame = 1
Query: 163 RALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRA---DTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRW----AREQALRDL 501
R K E + +KA AEDP +FDYDG YDE++ +K + R + + KY +I R+ E ER+ KER KE F DKE FVTGAY+K+ EE +++ A E A D+
Sbjct: 51 RIQKAAEREHQKAEAEDPTIFDYDGNYDEIQAIKNEKKEEARKADKNKESKYAEAIIKAHARRQLEQFSREERQQIKEREKEAGEFDDKEVFVTGAYRKQQEEVKKYREQEAEEAAFNDM 170
BLAST of Cs6g12540.1 vs. DB:SwissProt
Match:
NSRP1_CAEEL (Nuclear speckle splicing regulatory protein 1 homolog OS=Caenorhabditis elegans OX=6239 GN=ccdc-55 PE=2 SV=1)
HSP 1 Score: 65.0846 bits (157), Expect = 1.612e-10
Identity = 47/120 (39.17%), Postives = 66/120 (55.00%), Query Frame = 1
Query: 163 RALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRA---DTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEE----QQRWAREQALRDL 501
R K E + +KA AEDP +FDYDG YDE++ +K + R + + KY +I R+ E ER+ +ER KE F DKE FVTGAY+K+ EE +++ A E A D+
Sbjct: 51 RVQKAAEREHQKAEAEDPTIFDYDGNYDEIQAIKNEKKEEARKADKNRESKYAENIIKAHARRQLEQFSREERQQLREREKEGDEFDDKEVFVTGAYRKQQEEVKKHREQEAEEAAFNDM 170
The following BLAST results are available for this feature:
BLAST of Cs6g12540.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 (
C. sinensis v2.0, HZAU CDS )
Total hits: 7
200 400 600 800 1000 1200 1400 1600 1800 Expect = 8.22e-20 / Id = 40.91 Expect = 5.57e-19 / Id = 40.26 Expect = 1.33e-18 / Id = 39.58 Expect = 1.65e-17 / Id = 40.91 Expect = 2.75e-17 / Id = 40.91 Expect = 4.37e-11 / Id = 40.00 Expect = 1.61e-10 / Id = 39.17 Sequence NSRP1_BOVIN NSRP1_HUMAN NSRP1_DANRE NSRP1_MOUSE NSRP1_RAT NSRP1_CAEBR NSRP1_CAEEL
Match Name E-value Identity Description
NSRP1_BOVIN 8.217e-20 40.91 Nuclear speckle splicing regulatory protein 1 OS=B... [more] NSRP1_HUMAN 5.569e-19 40.26 Nuclear speckle splicing regulatory protein 1 OS=H... [more] NSRP1_DANRE 1.335e-18 39.58 Nuclear speckle splicing regulatory protein 1 OS=D... [more] NSRP1_MOUSE 1.650e-17 40.91 Nuclear speckle splicing regulatory protein 1 OS=M... [more] NSRP1_RAT 2.748e-17 40.91 Nuclear speckle splicing regulatory protein 1 OS=R... [more] NSRP1_CAEBR 4.372e-11 40.00 Nuclear speckle splicing regulatory protein 1 homo... [more] NSRP1_CAEEL 1.612e-10 39.17 Nuclear speckle splicing regulatory protein 1 homo... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>Cs6g12540.1_Hzau_Valencia_v1.0 ID=Cs6g12540.1_Hzau_Valencia_v1.0; Name=Cs6g12540.1; organism=Citrus sinensis; type=mRNA; length=1932bp back to top protein sequence of Cs6g12540.1
>Cs6g12540.1_Hzau_Valencia_v2.0-protein ID=Cs6g12540.1_Hzau_Valencia_v2.0-protein; Name=Cs6g12540.1; organism=Citrus sinensis; type=polypeptide; length=331bp back to top protein sequence of Cs6g12540.1_Hzau_Valencia_v1.0
>Cs6g12540.1_Hzau_Valencia_v1.0 ID=Cs6g12540.1_Hzau_Valencia_v1.0; Name=Cs6g12540.1_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=331bp back to top mRNA from alignment at chr6:14166197..14170729+
Legend: five_prime_UTR exon polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=4533bp; location=Sequence derived from: chr6:14166197..14170729+ (Citrus sinensisAATCTGCAAATTAATTTCACCAATTCCTCCCTTTCAGAATTCAGTTCGCC
TTTCCTATGCTTTCGTGAACACTTCAGAAGAAGCAGATTATCACAGCTTT
AAATTGATCACGTGCTCTGTGCTCAATTCTGTACGAAAAGAACCTTTAAT
CAGCTTTGTAAACTCGTTCGCTGGAGCCGATGAATCGACTCAG C
GTATAATTGAAAAATC ATGAGTAAATACGGCTTGCAACTTAGGGTTAATC
CATCACAACAAAAGAAACAGCCAACAAATAAGCCTCCGTTGCCACCGCCT
AAGGCTTTTGGTCTTGATGACGACGGCGGCGGCGGCGACGACGTGGAGGG
AGAAATCTCCCGCCAAGCTATCAAGAACAGGGCTCTCAAAGAG ATTGAGGAGCAGCAAAGGAAGGCCTTGGCAGAGG
ATCCAAATGTGTTTGATTATGACGGATGTTATGATGAGATGAAGCAGAAA
AGTGTCCGACGTAAAGTGCAGGATCGTGCAGACACACAG CCGA
AATATATTCATAAACTGATTCACAAAGCTGACGAGCGAAAGCGGGAGCAT
GACATAATCTATGAGAGGAAACTTACTAAAGAGAGAAGCAAGGAAGACCA
CCTTTTTGCAGACAAGGAAAAATTTGTTACAGGTGCTTACAAGAAGAAAC
TTGAAGAGCAGCAAAGGTGGGCTCGTGAACAAGCCTTGCGTGATCTTCGA
GATGAGAGAGATGAT GTCACCAAGAAGACTGATGT
GAGTGATTTTTACTTCAACCTTCATAAAAATGTTGCCTTTGGTGGAGGCA
ACAAGGACTCAATGAATTTAGACAAGAAGGCTGAAGTAACAAAGCCAGAG
AAAGAGGTAGACAAGAAGGCCGAACAAAGAAGGCCAGAGAAAGAGGAAAT
ACAAAGAGCTGCTGACACACCAGAGAAAGAACGTTTGTCTGCCTACTCAA
ACTCTGCTGCGGAGTCTTCCAGAGGGAAAGAAGGGCATCAGGCTGAAACT
TCGACTTCTAGAAGAAGCATCGAGTCCTCAGAATCAAACCCAGCATCTGA
CAGGCCAGTTTCAGACAGTTCAGAGCAAGAAAAACCTTCGGTTGAGAAAC
CATCTGATGGCCAACCAAAGCCTGACCATCACAAAAGAGGTCAAGATGCA
CTAGCTGCTGCTAAAGAGCGGTTTATGGCACGCAAGAAAGCGAAGGAACA
ATAA TGTTTCTGTCTATGGCCACAACTATTCTAACTTTACAAGCTTCAAC
ATTGAACTATTCATTTTCCCGTAATATGTGCTAACCGTAGAGACTGTTTC
TCTACAAATCATTTAGGCCTCCCAATCTGTGCTAGTTCGTTATTTATGAA
GTGATCAACATTGCCGTACTTGCTGATTTTGCCTTGTTCAGTTCATTAAG
TATTGGTTTTGCACATGTTCTGTTTACTTGAGCAGTAATAATACAGCACG
AAAAACTTGGTTTGGATGGTTCTATCAAGCATTATGTTGTAGTAGGGTAC
TTTTCTCTGCCATTGTTGCTGAAGAGGTCAACTTTAGTGGGATCGCCCTG
GTAGTGGATAACTTTGGCTGCTTGTATTAAATTTTGCCAACTGCACATCC
TAACTTTAACGTTACATGAGATGAACGGGGGGCCATTCAGAATGTGGTCC
ACGTGCCTGCCTGTTCCCTACGAACAGATATAGTATTCCGCCAAAAAGCT
ATGTACGCTGTTGCCCTACCCAACAGCAGATCAGAAAGCTTAATCACCTA
AGCTCCAGTGGCCTCGTGACCCACACAGCTCATGAGGGAAAAAAAGGTCT
GCAGTAGATCGATTGTATTATTCCATTCAATAATTAATACTTTTGATAAT
GAAATGTATTCATGTTGTATCCATGCCTGTTACCGAGTGACAGTTGTCTT
TTGCTATTCCAAATTTAATGCATTAGAGCATTG back to top Coding sequence (CDS) from alignment at chr6:14166197..14170729+
>Cs6g12540.1_Hzau_Valencia_v1.0 ID=Cs6g12540.1_Hzau_Valencia_v1.0; Name=Cs6g12540.1; organism=Citrus sinensis; type=CDS; length=993bp; location=Sequence derived from: chr6:14166197..14170729+ (Citrus sinensis back to top
