Cs6g12550.1, Cs6g12550.1_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Cs6g12550.1 vs. DB:SwissProt
Match: ASP63_ARATH (Probable aspartyl protease At4g16563 OS=Arabidopsis thaliana OX=3702 GN=At4g16563 PE=2 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.741e-38 Identity = 131/408 (32.11%), Postives = 189/408 (46.32%), Query Frame = 1 Query: 316 LDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCNDEPLATSKNC-------------TQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVGCSVLSSRQPAGIAGFGRGKTSLPSQLNL------DKFSYCLLSHKFDD--TTRTSSLILDNGSSHSDKKT----------------TGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGG-AEVTLPVENYFAVVGEG--------SAVCLTVVT---DREASGGPAIILGNFQMQNYYVEYDLRNQRLGFKQQLC 1392 LDTGS LVWFPC + C C S +P P SSS + H S+ D L NC + CP + YG G S++L+LP+ + NF GC+ + +P G+AGFGRG+ SLP+QL + + FSYCL+SH FD R S LIL +K+ +T + NP +Y V L+ I++G + + +D++G GG +VDSGTTFT + + + + +EF S++ R + RA E +G+ PC+ + +T P L LHF G + VTLP NYF +G CL ++ + E GG ILGN+Q Q + V YDL N+R+GF ++ C Sbjct: 100 LDTGSDLVWFPC-RPFTCILCESKPLPPSPPSSLSSSATTVSCSSPSCSAAHSSLPSSD-----LCAISNCPLDFIETGDCNTSSYPCPPFYYAYGDGSLVAKLYSDSLSLPSVSVSNFTFGCAHTTLAEPIGVAGFGRGRLSLPAQLAVHSPHLGNSFSYCLVSHSFDSDRVRRPSPLILGRFVDKKEKRVGTTDDHDDGDDEKKKKNEFVFTEMLENPK------HPYFYSVSLQGISIGKRNIPAPAMLRRIDKNGGGGVVVDSGTTFTMLPAKFYNSVVEEFDSRV--GRVHERADRVEPSSGMSPCYYL--NQTVKVPALVLHFAGNRSSVTLPRRNYFYEFMDGGDGKEEKRKIGCLMLMNGGDESELRGGTGAILGNYQQQGFEVVYDLLNRRVGFAKRKC 491
BLAST of Cs6g12550.1 vs. DB:SwissProt
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis OX=150966 GN=nep2 PE=1 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.073e-37 Identity = 114/376 (30.32%), Postives = 162/376 (43.09%), Query Frame = 1 Query: 283 FGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCNDEPLATSKNCTQICPSYLVLYGSG-LTEGIALSETLNLPNRIIPNFLVGCSV----LSSRQPAGIAGFGRGKTSLPSQLNLDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGE-KTGSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPAIILGNFQMQNYYVEYDLRNQRLGFKQQLC 1392 GTP I+DTGS L+W C C C S P F P+ SSS L C++ C + E+ +C Y YG G T+G +ET +PN GC AG+ G G G SLPSQL + +FSYC+ S+ ++ S+L L + +S + + T NP+ YYY+ L+ ITVGG + + L DG GG I+DSGTT T++ + + +A F Q+ E+ +GL CF P + T PE+ + F GG + L +N EG +CL + + + I GN Q Q V YDL+N + F C Sbjct: 102 IGTPDSSFSAIMDTGSDLIWTQCE---PCTQCFSQPTPIFNPQDSSSFSTLPCESQYCQDLPSETCNNNECQ----------------YTYGYGDGSTTQGYMATETFTFETSSVPNIAFGCGEDNQGFGQGNGAGLIGMGWGPLSLPSQLGVGQFSYCMTSYG---SSSPSTLALGSAASGVPEGSPSTTLIHSSLNPT---------YYYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQI------NLPTVDESSSGLSTCFQQPSDGSTVQVPEISMQFDGGV-LNLGEQNILISPAEG-VICLAMGSSSQLG---ISIFGNIQQQETQVLYDLQNLAVSFVPTQC 435
BLAST of Cs6g12550.1 vs. DB:SwissProt
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis OX=150966 GN=nep1 PE=1 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 5.077e-37 Identity = 117/377 (31.03%), Postives = 170/377 (45.09%), Query Frame = 1 Query: 283 FGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCNDEPLATSKNCTQICPSYLVLYGSGL-TEGIALSETLNLPNRIIPNFLVGCSV----LSSRQPAGIAGFGRGKTSLPSQLNLDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRVRVWHKYLTLD-RDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKTG-SFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPAIILGNFQMQNYYVEYDLRNQRLGFKQQLC 1392 GTP Q I+DTGS L+W C C C + P F P+ SSS L C + C + +S C+ Y YG G T+G +ETL + IPN GC AG+ G GRG SLPSQL++ KFSYC+ ++ S+L+L S ++ T G +P N ++ + + +YY+ L ++VG R+ + L+ +G GG I+DSGTT T+ ++ + EF+SQ+ N G+ + G CF P + + P +HF GG ++ LP ENYF G +CL + + + I GN Q QN V YD N + F C Sbjct: 101 IGTPAQPFSAIMDTGSDLIWTQCQ---PCTQCFNQSTPIFNPQGSSSFSTLPCSSQLCQAL----------------SSPTCSNNFCQYTYGYGDGSETQGSMGTETLTFGSVSIPNITFGCGENNQGFGQGNGAGLVGMGRGPLSLPSQLDVTKFSYCMTPIG---SSTPSNLLL---GSLANSVTAG---SP---NTTLIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQI----NLPVVNGSSS--GFDLCFQTPSDPSNLQIPTFVMHFDGG-DLELPSENYFISPSNG-LICLAMGSSSQGMS----IFGNIQQQNMLVVYDTGNSVVSFASAQC 434
BLAST of Cs6g12550.1 vs. DB:SwissProt
Match: AED3_ARATH (Aspartyl protease AED3 OS=Arabidopsis thaliana OX=3702 GN=AED3 PE=1 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 4.515e-34 Identity = 114/381 (29.92%), Postives = 170/381 (44.62%), Query Frame = 1 Query: 283 FGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCNDEPLATSKNCTQICPSYLVLYGSGLTEGIAL-SETLNLPNRIIPNFLVGC---SVLSSRQPAGIAGFGRGKTSLPSQ---LNLDKFSYCLLSHK---FDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPAIILGNFQMQNYYVEYDLRNQRLGFKQQLCK 1395 GTPPQ++ +LDT + VW PC+ C CS++ S+ S + C +C+ + C + +P S N + YG + +L +TL L +IPNF GC + +S P G+ G GRG SL SQ L FSYCL S + F + + L + + YTP + NP R + YYV L ++VG +V V YLT D + GTI+DSGT T A ++E + DEF Q+ N + LGA CF E P++ LH ++ LP+EN G+ CL++ R+ + ++ N Q QN + +D+ N R+G + C Sbjct: 110 LGTPPQLMFMVLDTSNDAVWLPCSG---CSGCSNASTSFNTNSSSTYSTV-SCSTAQCT--QARGLTCPSSSPQPSVCSFNQS---------YGGDSSFSASLVQDTLTLAPDVIPNFSFGCINSASGNSLPPQGLMGLGRGPMSLVSQTTSLYSGVFSYCLPSFRSFYFSGSLKLGLL----------GQPKSIRYTPLLRNP---RRPSL---YYVNLTGVSVGSVQVPVDPVYLTFDANSGAGTIIDSGTVITRFAQPVYEAIRDEFRKQV--NVSSFSTLGA-----FDTCFSADNENVA--PKITLHMT-SLDLKLPMENTLIHSSAGTLTCLSMAGIRQNANAVLNVIANLQQQNLRILFDVPNSRIGIAPEPCN 449
BLAST of Cs6g12550.1 vs. DB:SwissProt
Match: APF2_ARATH (Aspartyl protease family protein 2 OS=Arabidopsis thaliana OX=3702 GN=APF2 PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 6.151e-32 Identity = 117/377 (31.03%), Postives = 165/377 (43.77%), Query Frame = 1 Query: 286 GTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCNDEPLATSKNCTQICPSYLVLYGSG-LTEGIALSETLNLPNRIIPNFLVGCSVLSSR---QPAGIAGFGRGKTSLPSQLNL---DKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRV-RVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPAIILGNFQMQNYYVEYDLRNQRLGFKQQLC 1392 GTP + + +LDTGS +VW C C+ C S P F P+ S + + C +P C + R K C Y V YG G T G +ETL + +GC + AG+ G G+GK S P Q KFSYCL+ +++ SS++ N + + +TP ++NP + +YYVGL I+VGG RV V LD+ GNGG I+DSGT+ T + + + D F V + R A + CFD+ P + LHF+ GA+V+LP NY V C + G I+GN Q Q + V YDL + R+GF C Sbjct: 149 GTPARYVYMVLDTGSDIVWLQCA---PCRRCYSQSDPIFDPRKSKTYATIPCSSPHCRRLDSAGCNTR---------RKTCL-----YQVSYGDGSFTVGDFSTETLTFRRNRVKGVALGCGHDNEGLFVGAAGLLGLGKGKLSFPGQTGHRFNQKFSYCLVDRS--ASSKPSSVVFGNAAVSRIAR-----FTPLLSNPKL------DTFYYVGLLGISVGGTRVPGVTASLFKLDQIGNGGVIIDSGTSVTRLIRPAYIAMRDAF---RVGAKTLKR---APDFSLFDTCFDLSNMNEVKVPTVVLHFR-GADVSLPATNYLIPVDTNGKFCFAFA----GTMGGLSIIGNIQQQGFRVVYDLASSRVGFAPGGC 484
BLAST of Cs6g12550.1 vs. DB:SwissProt
Match: AP25_ORYSJ (Aspartyl protease 25 OS=Oryza sativa subsp. japonica OX=39947 GN=AP25 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.726e-30 Identity = 111/383 (28.98%), Postives = 158/383 (41.25%), Query Frame = 1 Query: 283 FGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCNDE---PLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVGCSVLSSRQPA------GIAGFGRGKTSLPSQ---LNLDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPAIILGNFQMQNYYVEYDLRNQRLGFKQQLCK 1395 G+P Q + LDT + W C+ C C SS + F P SSS L C + C ++ + P AT C P + + S+TL L IPN+ GC V S P G+ G GRG +L SQ L FSYCL S++ + SL L G + YTP + NP R++ YYV + ++VG V+V D GT+VDSGT T ++ L +EF Q+ YT +LGA CF+ G P + +H GG ++ LP+EN CL + + ++ N Q QN V +D+ N R+GF ++ C Sbjct: 85 LGSPSQQLLLALDTSADATWAHCS---PCGTCPSSSL--FAPANSSSYASLPCSSSWCPLFQGQACPAPQGGGDAAPPPATLPTCAFSKP-----FADASFQAALASDTLRLGKDAIPNYTFGC-VSSVTGPTTNMPRQGLLGLGRGPMALLSQAGSLYNGVFSYCLPSYR--SYYFSGSLRLGAGGGQPRS----VRYTPMLRNP---HRSSL---YYVNVTGLSVGHAWVKVPAGSFAFDAATGAGTVVDSGTVITRWTAPVYAALREEFRRQVAAPSGYT-SLGA-----FDTCFNTDEVAAGGAPAVTVHMDGGVDLALPMENTLIHSSATPLACLAMAEAPQNVNSVVNVIANLQQQNIRVVFDVANSRVGFAKESCN 438
BLAST of Cs6g12550.1 vs. DB:SwissProt
Match: ASPG1_ARATH (Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana OX=3702 GN=ASPG1 PE=1 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 5.515e-29 Identity = 107/374 (28.61%), Postives = 159/374 (42.51%), Query Frame = 1 Query: 286 GTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCNDEPLATSKNCTQICPSYLVLYGSG-LTEGIALSETLNLPNR-IIPNFLVGCSVLSS---RQPAGIAGFGRGKTSLPSQLNLDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPAIILGNFQMQNYYVEYDLRNQRLGFKQQLC 1392 GTP + + +LDTGS + W C C C P F P SS+ + L C P+CS + E+ CR S C Y V YG G T G ++T+ N I N +GC + AG+ G G G S+ +Q+ FSYCL+ D+ ++SSL +S + G P + N + +YYVGL +VGG++V + +D G+GG I+D GT T + + + L D F+ V + G+ +++ C+D T P + HF GG + LP +NY V + C + I+GN Q Q + YDL +G C Sbjct: 169 GTPAKEMYLVLDTGSDVNWIQCE---PCADCYQQSDPVFNPTSSSTYKSLTCSAPQCSLL--ETSACR---------SNKCL-----YQVSYGDGSFTVGELATDTVTFGNSGKINNVALGCGHDNEGLFTGAAGLLGLGGGVLSITNQMKATSFSYCLVDR---DSGKSSSLDF-----NSVQLGGGDATAPLLRNKKI------DTFYYVGLSGFSVGGEKVVLPDAIFDVDASGSGGVILDCGTAVTRLQTQAYNSLRDAFLKLTVNLKK-----GSSSISLFDTCYDFSSLSTVKVPTVAFHFTGGKSLDLPAKNYLIPVDDSGTFCFAFA----PTSSSLSIIGNVQQQGTRITYDLSKNVIGLSGNKC 500
BLAST of Cs6g12550.1 vs. DB:SwissProt
Match: ASPA_ARATH (Aspartyl protease family protein At5g10770 OS=Arabidopsis thaliana OX=3702 GN=At5g10770 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.487e-23 Identity = 111/379 (29.29%), Postives = 154/379 (40.63%), Query Frame = 1 Query: 283 FGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCNDEPLATSKNCTQICPSYLVLYGS-GLTEGIALSETLNLPNR-IIPNFLVGCSVLSS---RQPAGIAGFGRGKTSLPSQLNL---DKFSYCLLSHKFDDTTRTSSLILDN-GSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPAIILGNFQMQNYYVEYDLRNQRLGFKQQLC 1392 GTP + I DTGS L W C + C K P F P S+S + C + C + + C ++ NC Y + YG + G E L N + GC + AG+ G GR K S PSQ FSYCL S + T L + G S S K +TP ++ + +F Y + + ITVGGQ++ + + G ++DSGT T + P+ + L F ++M K Y G L CFD+ G KT + P++ F GGA V L + F V + S VCL + + S A I GN Q Q V YD R+GF C Sbjct: 138 LGTPKNDLSLIFDTGSDLTWTQC--QPCVRTCYDQKEPIFNPSKSTSYYNVSCSSAACGSLSSATGNAGSC------SASNCI-----YGIQYGDQSFSVGFLAKEKFTLTNSDVFDGVYFGCGENNQGLFTGVAGLLGLGRDKLSFPSQTATAYNKIFSYCLPS----SASYTGHLTFGSAGISRSVK------FTPI---STITDGTSF---YGLNIVAITVGGQKLPIPSTVFSTP-----GALIDSGTVITRLPPKAYAALRSSFKAKMSK---YPTTSGVSIL---DTCFDLSGFKTVTIPKVAFSFSGGAVVELGSKGIFYVF-KISQVCLAFAGNSDDSN--AAIFGNVQQQTLEVVYDGAGGRVGFAPNGC 473
BLAST of Cs6g12550.1 vs. DB:SwissProt
Match: ASPR1_ARATH (Probable aspartic protease At2g35615 OS=Arabidopsis thaliana OX=3702 GN=At2g35615 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 3.229e-22 Identity = 111/401 (27.68%), Postives = 160/401 (39.90%), Query Frame = 1 Query: 283 FGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCNDEPLATSKNCTQICPSYLVLYGS-GLTEGIALSETLNLPNR-----IIPNFLVGCSVLSSRQPAGIAGFGRGKT----------------SLPSQLNLD---KFSYCLLSHKFDDTTRTSSLILDNGSSHSD-KKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRVRVWHKYLTLDRDG-----NGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPAIILGNFQMQNYYVEYDLRNQRLGFKQQLC 1392 GTPP + I DTGS L W C C+ C P F K SS+ + C + C + C + N+ IC Y YG ++G +ET+++ + P + GC G+ G T SL SQL KFSYC LSHK T TS + L S S K +G+ TP V+ + YYY+ L I+VG +++ + DG +G I+DSGTT T + F+ + + + + G L CF + G PE+ +HF GA+V L N F + E VCL++V E + I GNF ++ V YDL + + F+ C Sbjct: 91 IGTPPIKVFAIADTGSDLTWVQCK---PCQQCYKENGPIFDKKKSSTYKSEPCDSRNCQALSSTERGCDESNN-----------IC-KYRYSYGDQSFSKGDVATETVSIDSASGSPVSFPGTVFGC------------GYNNGGTFDETGSGIIGLGGGHLSLISQLGSSISKKFSYC-LSHKSATTNGTSVINLGTNSIPSSLSKDSGVVSTPLVDKEPL-------TYYYLTLEAISVGKKKIPYTGSSYNPNDDGILSETSGNIIIDSGTTLTLLEAGFFDKFSSAVEESVTGAKRVSDPQGL-----LSHCFKSGSAEIG-LPEITVHFT-GADVRLSPINAFVKLSE-DMVCLSMVPTTEVA-----IYGNFAQMDFLVGYDLETRTVSFQHMDC 443
BLAST of Cs6g12550.1 vs. DB:SwissProt
Match: ASPG2_ARATH (Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana OX=3702 GN=ASPG2 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 8.222e-22 Identity = 105/376 (27.93%), Postives = 151/376 (40.16%), Query Frame = 1 Query: 286 GTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCNDEPLATSKNCTQICPSYLVLYGSG-LTEGIALSETLNLPNRIIPNFLVGCSVLSS---RQPAGIAGFGRGKTSLPSQLNLD---KFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPAIILGNFQMQNYYVEYDLRNQRLGFKQQLC 1392 G+PP+ ++D+GS +VW C CK C P F P S S + C + C I + C Y V+YG G T+G ETL ++ N +GC + AG+ G G G S QL+ F YCL+S D T SL+ + G ++ P V NP +YYVGL+ + VGG R+ + L G+GG ++D+GT T + + D F SQ N RA G C+D+ G + P + +F G +TLP N+ V + C AS I+GN Q + V +D N +GF +C Sbjct: 138 GSPPRDQYMVIDSGSDMVWVQCQ---PCKLCYKQSDPVFDPAKSGSYTGVSCGSSVCDRIENSGCHSGGCR----------------YEVMYGDGSYTKGTLALETLTFAKTVVRNVAMGCGHRNRGMFIGAAGLLGIGGGSMSFVGQLSGQTGGAFGYCLVSRGTDST---GSLVFGR-----EALPVGASWVPLVRNPRAPS------FYYVGLKGLGVGGVRIPLPDGVFDLTETGDGGVVMDTGTAVTRLPTAAYVAFRDGFKSQTA---NLPRASGVSIFD---TCYDLSGFVSVRVPTVSFYFTEGPVLTLPARNFLMPVDDSGTYCFAFA----ASPTGLSIIGNIQQEGIQVSFDGANGFVGFGPNVC 470 The following BLAST results are available for this feature:
BLAST of Cs6g12550.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cs6g12550.1_Hzau_Valencia_v1.0 ID=Cs6g12550.1_Hzau_Valencia_v1.0; Name=Cs6g12550.1; organism=Citrus sinensis; type=mRNA; length=2084bpback to top protein sequence of Cs6g12550.1 >Cs6g12550.1_Hzau_Valencia_v2.0-protein ID=Cs6g12550.1_Hzau_Valencia_v2.0-protein; Name=Cs6g12550.1; organism=Citrus sinensis; type=polypeptide; length=466bpback to top protein sequence of Cs6g12550.1_Hzau_Valencia_v1.0 >Cs6g12550.1_Hzau_Valencia_v1.0 ID=Cs6g12550.1_Hzau_Valencia_v1.0; Name=Cs6g12550.1_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=466bpback to top mRNA from alignment at chr6:14171107..14173190+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2084bp; location=Sequence derived from: chr6:14171107..14173190+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at chr6:14171107..14173190+ >Cs6g12550.1_Hzau_Valencia_v1.0 ID=Cs6g12550.1_Hzau_Valencia_v1.0; Name=Cs6g12550.1; organism=Citrus sinensis; type=CDS; length=1398bp; location=Sequence derived from: chr6:14171107..14173190+ (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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