Cs6g12560.1, Cs6g12560.1_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Cs6g12560.1 vs. DB:SwissProt
Match: NHL1_ARATH (NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=NHL1 PE=2 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 3.616e-73 Identity = 112/210 (53.33%), Postives = 159/210 (75.71%), Query Frame = 1 Query: 10 KDCGHSHDDRKKLVRXXXXXXXXXXXXXXXXXXXXXXXTRPSKPSFILQDATLYAFNLSTGPSPPNALTTNLQVTITTRNPNDQIGIYYQKADVYASYRNQQISLATLLPATYQGHKDVIVWSPFLCGNSVPVSPFVAEALGQDLNAGMVMVNIKVDGRIKWKVGTWISGRYHLHVNCPAYITFGDKSKGIASG-ASLKFQLVQSCSVDV 636 KDC + R+KL+R I +++ ++ ++ L I L WAI +PSKP FILQDAT+YAFN+S +PPN LT+N Q+T+++RNPN++IGIYY + DVYA+YR+QQI+ T +P TYQGHKDV +WSPF+ G SVP++PF +L D + G+V++ I+ DGR++WKVGT+I+G+YHLHV CPAYI FG+K+ G+ G ++K+ SCSV V Sbjct: 2 KDCENHGHSRRKLIRRIFWSIIFVLFIIFLTILLIWAILQPSKPRFILQDATVYAFNVSG--NPPNLLTSNFQITLSSRNPNNKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKDVDIWSPFVYGTSVPIAPFNGVSLDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLHVKCPAYINFGNKANGVIVGDNAVKYTFTTSCSVSV 209
BLAST of Cs6g12560.1 vs. DB:SwissProt
Match: NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=NHL12 PE=2 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 1.116e-67 Identity = 98/171 (57.31%), Postives = 128/171 (74.85%), Query Frame = 1 Query: 127 RPSKPSFILQDATLYAFNLSTGPSPPNALTTNLQVTITTRNPNDQIGIYYQKADVYASYRNQQISLATLLPATYQGHKDVIVWSPFLCGNSVPVSPFVAEALGQDLNAGMVMVNIKVDGRIKWKVGTWISGRYHLHVNCPAYITFGDKSKGIASGA-SLKFQLVQSCSVDV 636 +P+KP FILQDAT+YAFNLS PN LT+N Q+TI +RN N +IGIYY + VYA+YRNQQI+L T +P TYQGHK+ VWSPF+ GNSVP++PF A ALG + N G V + I+ DGR++WKVGT I+G+YHLHV C A+I DK+ G+ G ++K+ L+ CSV+V Sbjct: 44 QPTKPRFILQDATVYAFNLSQ----PNLLTSNFQITIASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPFNAVALGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHVRCQAFINLADKAAGVHVGENAVKYMLINKCSVNV 210
BLAST of Cs6g12560.1 vs. DB:SwissProt
Match: NHL26_ARATH (NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.061e-37 Identity = 57/145 (39.31%), Postives = 97/145 (66.90%), Query Frame = 1 Query: 130 PSKPSFILQDATLYAFNLSTGPSPPNALTTNLQVTITTRNPNDQIGIYYQKADVYASYRNQQISLATLLPATYQGHKDVIVWSPFLCGNSVPVSPFVAEALGQDLNAGMVMVNIKVDGRIKWKVGTWISGRYHLHVNCPAYITFG 564 P +P F L +A +Y+ NL+T S + L +++Q+T+ ++NPN ++GIYY K VYA+YR QQI+ LP YQ H+++ + + FL G +PV+ + ++ + G +++ +K+DG+++WK+GTW+SG Y +VNC A + FG Sbjct: 51 PERPEFSLTEADIYSLNLTT--SSTHLLNSSVQLTLFSKNPNKKVGIYYDKLLVYAAYRGQQITSEASLPPFYQSHEEINLLTAFLQGTELPVAQSFGYQISRERSTGKIIIGMKMDGKLRWKIGTWVSGAYRFNVNCLAIVAFG 193
BLAST of Cs6g12560.1 vs. DB:SwissProt
Match: NHL10_ARATH (NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 8.053e-16 Identity = 48/141 (34.04%), Postives = 74/141 (52.48%), Query Frame = 1 Query: 124 TRPSKPSFILQDATLYAFNLSTGPSPPNALTTNLQVTITTRNPNDQIGIYYQKADVYASYRNQQISLATLLPATYQGHKDVIVWSPFLCG-NSVPVSPFVAEALGQDLNAGMVMVNIKVDGRIKWKVGTWISGRYHLHVNC 543 RP F + DA+L F+ + SP N L NL +T+ RNPN +IG+YY + + +A Y ++ S TL P YQGHK+ V +P G N V + + L + +G+ + IK R+++K+G R V+C Sbjct: 63 VRPRAIKFHVTDASLTRFDHT---SPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTP-FYQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDC 199
BLAST of Cs6g12560.1 vs. DB:SwissProt
Match: NHL3_ARATH (NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=NHL3 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 9.756e-15 Identity = 44/140 (31.43%), Postives = 71/140 (50.71%), Query Frame = 1 Query: 127 RPSKPSFILQDATLYAFNLSTGPSPPNALTTNLQVTITTRNPNDQIGIYYQKADVYASYRNQQISLATLLPATYQGHKDVIVWSPFLCGNS-VPVSPFVAEALGQDLNAGMVMVNIKVDGRIKWKVGTWISGRYHLHVNC 543 RP+ F + DA L F L P N L NL + T RNPN +IG+YY + +V Y +Q+ ++ + YQGHK+ V L G V + + L +D+N+ + ++ K+ +I++K G S R+ + C Sbjct: 71 RPNAIKFHVTDAKLTEFTLD----PTNNLRYNLDLNFTIRNPNRRIGVYYDEIEVRGYYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRFKPKIKC 206
BLAST of Cs6g12560.1 vs. DB:SwissProt
Match: NHL6_ARATH (NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=NHL6 PE=1 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 4.442e-9 Identity = 41/144 (28.47%), Postives = 65/144 (45.14%), Query Frame = 1 Query: 127 RPSKPSFILQDATLYAFNLSTGPSPPNALTTNLQVTITTRNPNDQIGIYYQK-ADVYASYRNQQISLATLLPATYQGHKDVIVWSPFLCGNSVPVSPFVAEALGQDLNAGMVMVNIKVDGRIKWKVGTWISGRYHLHVNCPAYI 555 +P P + + L F L+ S LTT VTIT +NPN++IGIYY+ + + Y Q+S + LP YQGH++ V + G + S Q G + + I+V+ ++ K G V C ++ Sbjct: 92 KPKLPDYSIDRLQLTRFALNQDSS----LTTAFNVTITAKNPNEKIGIYYEDGSKITVWYMEHQLSNGS-LPKFYQGHENTTVIYVEMTGQTQNASGLRTTLEEQQQRTGNIPLRIRVNQPVRVKFGKLKLFEVRFLVRCGVFV 230
BLAST of Cs6g12560.1 vs. DB:SwissProt
Match: NHL2_ARATH (NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 9.127e-9 Identity = 50/172 (29.07%), Postives = 77/172 (44.77%), Query Frame = 1 Query: 127 RPSKPSFILQDATLYAFNLSTGPSPPNALTTNLQVTITTRNPNDQIGIYYQKADVYASYRNQQISLATLLPATYQGHKDVIVWSPFLCG-NSVPVSPFVAEALGQDLNAGMVMVNIKVDGRIKWKVGTWISGRYHLHVNCPAY-ITFGDKSKGIASGASLKFQLVQSCSVDV 636 RP+ F + DA L F+ P N L +L + T RNPN ++G+YY + V Y +Q+ A + + YQGHK+ V + G N V + L D +G+ +N K+ +++K S + + C I G + S KFQ VQ C D+ Sbjct: 78 RPNAVKFYVADANLNRFSFD----PNNNLHYSLDLNFTIRNPNQRVGVYYDEFSVSGYYGDQRFGSAN-VSSFYQGHKNTTVILTKIEGQNLVVLGDGARTDLKDDEKSGIYRINAKLRLSVRFKFWFIKSWKLKPKIKCDDLKIPLGSSN----STGGFKFQPVQ-CDFDL 239
BLAST of Cs6g12560.1 vs. DB:SwissProt
Match: NHL13_ARATH (NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 7.154e-8 Identity = 35/140 (25.00%), Postives = 69/140 (49.29%), Query Frame = 1 Query: 127 RPSKPSFILQDATLYAFNL-STGPSPPNALTTNLQVTITTRNPNDQIGIYYQKADVYASYRNQQISLATLLPATYQGHKDVIVWSPFLCGNSVPVSPFVAEALGQDLNAGMVMVNIKVDGRIKWKVGTWISGRYHLHVNC 543 RP P + ++ ++ NL ST P ++ + VT+ +RN N +IG+YY+K Y N ++P YQ K+V V L G+ + ++ + + + +++ V +K+ +K K G+ + ++V+C Sbjct: 101 RPEAPKYSIEGFSVSGINLNSTSP-----ISPSFNVTVRSRNGNGKIGVYYEKESSVDVYYNDVDISNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKTVPFKLKIKAPVKIKFGSVKTWTMIVNVDC 235 The following BLAST results are available for this feature:
BLAST of Cs6g12560.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS) Total hits: 8 Position : 0 Zoom : x 1
InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cs6g12560.1_Hzau_Valencia_v1.0 ID=Cs6g12560.1_Hzau_Valencia_v1.0; Name=Cs6g12560.1; organism=Citrus sinensis; type=mRNA; length=942bpback to top protein sequence of Cs6g12560.1 >Cs6g12560.1_Hzau_Valencia_v2.0-protein ID=Cs6g12560.1_Hzau_Valencia_v2.0-protein; Name=Cs6g12560.1; organism=Citrus sinensis; type=polypeptide; length=213bpback to top protein sequence of Cs6g12560.1_Hzau_Valencia_v1.0 >Cs6g12560.1_Hzau_Valencia_v1.0 ID=Cs6g12560.1_Hzau_Valencia_v1.0; Name=Cs6g12560.1_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=213bpback to top mRNA from alignment at chr6:14175756..14176697- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=942bp; location=Sequence derived from: chr6:14175756..14176697- (Citrus sinensisback to top Coding sequence (CDS) from alignment at chr6:14175756..14176697- >Cs6g12560.1_Hzau_Valencia_v1.0 ID=Cs6g12560.1_Hzau_Valencia_v1.0; Name=Cs6g12560.1; organism=Citrus sinensis; type=CDS; length=639bp; location=Sequence derived from: chr6:14175756..14176697- (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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