Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Cs6g13300.2 Cs6g13300.2_Hzau_Valencia_v2.0-protein Citrus sinensis polypeptide Cs6g13300.2_Hzau_Valencia_v1.0 Cs6g13300.2_Hzau_Valencia_v1.0 Citrus sinensis polypeptide
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g13300.2.utr3.1 Cs6g13300.2.utr3.1_Hzau_Valencia_v1.0 Citrus sinensis three_prime_UTR
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g13300.2.cds.12 Cs6g13300.2.cds.12_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g13300.2.cds.11 Cs6g13300.2.cds.11_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g13300.2.cds.10 Cs6g13300.2.cds.10_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g13300.2.cds.9 Cs6g13300.2.cds.9_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g13300.2.cds.8 Cs6g13300.2.cds.8_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g13300.2.cds.7 Cs6g13300.2.cds.7_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g13300.2.cds.6 Cs6g13300.2.cds.6_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g13300.2.cds.5 Cs6g13300.2.cds.5_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g13300.2.cds.4 Cs6g13300.2.cds.4_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g13300.2.cds.3 Cs6g13300.2.cds.3_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g13300.2.cds.2 Cs6g13300.2.cds.2_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g13300.2.cds.1 Cs6g13300.2.cds.1_Hzau_Valencia_v1.0 Citrus sinensis CDS
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g13300.2.exon.13 Cs6g13300.2.exon.13_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g13300.2.exon.12 Cs6g13300.2.exon.12_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g13300.2.exon.11 Cs6g13300.2.exon.11_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g13300.2.exon.10 Cs6g13300.2.exon.10_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g13300.2.exon.9 Cs6g13300.2.exon.9_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g13300.2.exon.8 Cs6g13300.2.exon.8_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g13300.2.exon.7 Cs6g13300.2.exon.7_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g13300.2.exon.6 Cs6g13300.2.exon.6_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g13300.2.exon.5 Cs6g13300.2.exon.5_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g13300.2.exon.4 Cs6g13300.2.exon.4_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g13300.2.exon.3 Cs6g13300.2.exon.3_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g13300.2.exon.2 Cs6g13300.2.exon.2_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g13300.2.exon.1 Cs6g13300.2.exon.1_Hzau_Valencia_v1.0 Citrus sinensis exon
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g13300.2.utr5.2 Cs6g13300.2.utr5.2_Hzau_Valencia_v1.0 Citrus sinensis five_prime_UTR Cs6g13300.2.utr5.1 Cs6g13300.2.utr5.1_Hzau_Valencia_v1.0 Citrus sinensis five_prime_UTR
Homology
BLAST of Cs6g13300.2 vs. DB:SwissProt
Match:
DONS_DROME (Protein downstream neighbor of son homolog OS=Drosophila melanogaster OX=7227 GN=hd PE=1 SV=1)
HSP 1 Score: 75.8702 bits (185), Expect = 3.692e-13
Identity = 76/323 (23.53%), Postives = 132/323 (40.87%), Query Frame = 1
Query: 709 GVEMDFLRKRQLA--WEESFRSLYYMLRKKVCNIFYVCTSYFVVMFIGADGLGTNQQSCYAYISQSTRGLRSSLKEHDVCFSMPLC---------RSKVEQITTEDL---------------------------VELSEIEKHNLGQTRRSSSLSDIDNTSQSLLAFSDNKNVHALYDFLLNYRSFLTFL--TASDVPVLYSPVPFQNATLS--APEVTCMEMKRSDQIAALPKGSIAKDSETTHNSSLGFCCSIEIKGTCLPPWIICNICSLMGSEGRNFEASLTTERTSVGLNVALGAVSDKSDAQTTDGEGLQSIIPAFG 1551
GV + ++ LA W+ SFR L+ +LR + C FY+C + F V+F A G+G +S +A ++ STRG+R +L++ + FSMPL S E+ TT L V+ E+ + R+ + ++ S + L D + +LLN +S ++ + A P L SPV F AT+ P + + D SI+IKG LP + + ++ L+ + F ++L + ++ + A + + + +D EG + FG
Sbjct: 231 GVVVGERERKALAEEWDFSFRGLFQLLRARQCPYFYLCANTFTVLFRAA-GVGGRPES-HALVTPSTRGMRQALRQEGIEFSMPLKSDNSGNAHDNSFNEESTTTSLGPEAGEDAPPPAQEDEDDDEDWLESLGVDERELRRIQSSHARKQQAAEMREDFSDNSLLLVDGVECQGFFSYLLNAKSAISTVGRLAGVPPTLLSPVAFPKATMQHLVPRSKKVRLDGVDYF------------------------SIDIKGLILPTF-LPSVAELLSETRQMFSSTLASSINTLAFSKATQKLLETPETPQSDAEGEDAAGQVFG 526
BLAST of Cs6g13300.2 vs. DB:SwissProt
Match:
DONS_HUMAN (Protein downstream neighbor of Son OS=Homo sapiens OX=9606 GN=DONSON PE=1 SV=2)
HSP 1 Score: 71.633 bits (174), Expect = 8.172e-12
Identity = 70/276 (25.36%), Postives = 115/276 (41.67%), Query Frame = 1
Query: 748 WEESFRSLYYMLRKKVCNIFYVCTSYFVVMFIGADGLGTNQQSCYAYISQSTRGLRSSLKEHDVCFSMPLCR-------------------------------SKVEQITTEDLVELSEIEKHNLGQTRRSSSLSDIDNTSQSLLAFSDNKNVHALYDFLLNYRSFL--TFLTASDVPVLYSPVPFQNATLSAPEVTCMEMKRSDQIAALPKGSIAKDSETTHNSSLGFCCSIEIKGTCLPPWIICNICSLMGSEGRNFEASLTTERTSVGLNVAL 1476
W SF SLY +L+ K+C FYVCT F V+F A G++ A IS +TRGLR +++ + FS+PL + S +E++ +D ++ +I L R+ +D+ +S++ N L +FL+N +S + + A P L SPV F+ AT M+M ++ + + +T S S+EI G +P + L S+ +F A L + N+ L
Sbjct: 262 WSVSFTSLYNLLKTKLCPYFYVCTYQFTVLFRAAGLAGSDL--ITALISPTTRGLREAMRNEGIEFSLPLIKESGHKKETASGTSLGYGEEQAISDEDEEESFSWLEEMGVQDKIKKPDILSIKL---RKEKHEVQMDHRPESVV-LVKGINTFTLLNFLINSKSLVATSGPQAGLPPTLLSPVAFRGAT--------MQMLKARSV----------NVKTQALSGYRDQFSLEITGPIMPHSLHSLTMLLKSSQSGSFSAVLYPHEPTAVFNICL 513
BLAST of Cs6g13300.2 vs. DB:SwissProt
Match:
DONS_XENLA (Protein downstream neighbor of son homolog OS=Xenopus laevis OX=8355 GN=donson PE=2 SV=1)
HSP 1 Score: 71.2478 bits (173), Expect = 9.190e-12
Identity = 71/287 (24.74%), Postives = 112/287 (39.02%), Query Frame = 1
Query: 748 WEESFRSLYYMLRKKVCNIFYVCTSYFVVMFIGADGLGTNQQSCYAYISQSTRGLRSSLKEHDVCFSMPLCR------------------------------------------SKVEQITTEDLVELSEIEKHNLGQTRRSSSLSDIDNTSQSLLAFSDNKNVHALYDFLLNYRSFLTF--LTASDVPVLYSPVPFQNATLSAPEVTCMEMKRSDQIAALPKGSIAKDSETTHNSSLGFCCSIEIKGTCLPPWIICNICSLMGSEGRNFEASLTTERTSVGLNVAL 1476
W SF SLY +L+ K+C FYVCT F V+F A G++ A +S +TRGLR ++K + FS PL S +E++ ED ++ + L R+ + +D+ +S++ N L +FL+N +S + L A P L SPV F+ AT+ A + + +K T NS S+EI G +P + L ++ +F A L T + N +
Sbjct: 268 WALSFTSLYNLLKAKLCPYFYVCTYQFTVLFRAAGLAGSD--VITAVMSPTTRGLREAMKNEGITFSQPLVEDDTGKKQKKPEAASQGDINPEKENGTAEADEASDESDEDESFSWLEEMGVEDKIKKPDSISIKL---RKEKNEVKLDHKPESVV-LVKGTNTFTLLNFLINCKSIVAAAGLQAGLPPTLLSPVAFRGATMHALKARSVNVK------------------TRVNSGYKDQFSLEITGPIMPHSLHSLTMLLQSAQRGSFSAGLYTHEPTAVFNTPI 530
BLAST of Cs6g13300.2 vs. DB:SwissProt
Match:
DONS_MOUSE (Protein downstream neighbor of Son OS=Mus musculus OX=10090 GN=Donson PE=1 SV=2)
HSP 1 Score: 67.0106 bits (162), Expect = 1.965e-10
Identity = 68/275 (24.73%), Postives = 112/275 (40.73%), Query Frame = 1
Query: 748 WEESFRSLYYMLRKKVCNIFYVCTSYFVVMFIGADGLGTNQQSCYAYISQSTRGLRSSLKEHDVCFSMPLCR------------------------------SKVEQITTEDLVELSEIEKHNLGQTRRSSSLSDIDNTSQSLLAFSDNKNVHALYDFLLNYRSFL--TFLTASDVPVLYSPVPFQNATLSAPEVTCMEMKRSDQIAALPKGSIAKDSETTHNSSLGFCCSIEIKGTCLPPWIICNICSLMGSEGRNFEASLTTERTSVGLNVAL 1476
W SF SLY +L+ K+C FYVC+ F V+F A G++ A IS +TRGLR +++ + FS+PL S +E+I +D ++ ++ L R+ +D+ +S++ N L +FL+N +S + + A P L SP+ F+ A++ M RS + +T S S++I G +P + L S+ +F A L + NV L
Sbjct: 257 WSVSFTSLYNLLKTKLCPYFYVCSYQFTVLFRAAGLAGSS--VITALISPTTRGLREAMRNEGIEFSLPLLEEIGHKKKVRDPSLESEEEQAVSDEDEEESFSWLEEIGVQDQIKKPDVISIKL---RKEKHEVQMDHRPESVV-LVKGLNTFKLLNFLINCKSLVATSGAQAGLPPTLLSPIAFRGASMQ------MLKARSSNV------------KTQALSGYRDKFSLDITGPVMPHALHSMSMLLRSSQRGSFSAGLYAHEPTAVFNVGL 507
BLAST of Cs6g13300.2 vs. DB:SwissProt
Match:
DONS_XENTR (Protein downstream neighbor of son homolog OS=Xenopus tropicalis OX=8364 GN=donson PE=2 SV=1)
HSP 1 Score: 64.6994 bits (156), Expect = 1.171e-9
Identity = 53/202 (26.24%), Postives = 84/202 (41.58%), Query Frame = 1
Query: 748 WEESFRSLYYMLRKKVCNIFYVCTSYFVVMFIGADGLGTNQQSCYAYISQSTRGLRSSLKEHDVCFSMPLCR------------------------------------------SKVEQITTEDLVELSEIEKHNLGQTRRSSSLSDIDNTSQSLLAFSDNKNVHALYDFLLNYRSFLTFL--TASDVPVLYSPVPFQNATL 1221
W SF SLY +L+ K+C FYVCT F V+F A G++ A +S +TRGLR ++K + F+ PL S +E++ ED ++ + L R+ + +D+ +S++ N L +FL+N +S + A P L SPV F+ AT+
Sbjct: 265 WALSFTSLYNLLKAKLCPYFYVCTYQFTVLFRAAGLAGSD--VITAVMSPTTRGLREAMKNEGITFTQPLVEEDPSKKQKNSEANSQGDITPKKENGNTETDEVSDESDEDESFSWLEEMGVEDKIKKPDSISIKL---RKEKNEVKLDHKPESVV-LVKGTNTFTLLNFLINCKSIVAAAGPQAGLPPTLLSPVAFRGATM 460
The following BLAST results are available for this feature:
BLAST of Cs6g13300.2 vs. DB:SwissProt
Analysis Date: 2018-06-07 (
C. sinensis v2.0, HZAU CDS )
Total hits: 5
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 Expect = 3.69e-13 / Id = 23.53 Expect = 8.17e-12 / Id = 25.36 Expect = 9.19e-12 / Id = 24.74 Expect = 1.96e-10 / Id = 24.73 Expect = 1.17e-9 / Id = 26.24 Sequence DONS_DROME DONS_HUMAN DONS_XENLA DONS_MOUSE DONS_XENTR
Match Name E-value Identity Description
DONS_DROME 3.692e-13 23.53 Protein downstream neighbor of son homolog OS=Dros... [more] DONS_HUMAN 8.172e-12 25.36 Protein downstream neighbor of Son OS=Homo sapiens... [more] DONS_XENLA 9.190e-12 24.74 Protein downstream neighbor of son homolog OS=Xeno... [more] DONS_MOUSE 1.965e-10 24.73 Protein downstream neighbor of Son OS=Mus musculus... [more] DONS_XENTR 1.171e-9 26.24 Protein downstream neighbor of son homolog OS=Xeno... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>Cs6g13300.2_Hzau_Valencia_v1.0 ID=Cs6g13300.2_Hzau_Valencia_v1.0; Name=Cs6g13300.2; organism=Citrus sinensis; type=mRNA; length=2652bp back to top protein sequence of Cs6g13300.2
>Cs6g13300.2_Hzau_Valencia_v2.0-protein ID=Cs6g13300.2_Hzau_Valencia_v2.0-protein; Name=Cs6g13300.2; organism=Citrus sinensis; type=polypeptide; length=550bp back to top protein sequence of Cs6g13300.2_Hzau_Valencia_v1.0
>Cs6g13300.2_Hzau_Valencia_v1.0 ID=Cs6g13300.2_Hzau_Valencia_v1.0; Name=Cs6g13300.2_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=550bp back to top mRNA from alignment at chr6:14773882..14778556-
Legend: exon five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=4675bp; location=Sequence derived from: chr6:14773882..14778556- (Citrus sinensisCGGAAAGTTAACGGAAAGCTAACGGCGTCAATGAGAGGAGGGAAATCAAA
TTTGTTTCAAAACCAAAACACTCAAAAATCCACACTTTTCACCGCGATTT
CTCCGCTTCTCACTTTCTGCATCTCACACACTCTCTTCGTAATGTTTTTT
TGGCCCTAATTTGATTAATGACATCGTTTCTCCCTTTATACATCTCCCTC
TCTCATTCTTGACGATTTTGCCCTAATTTCGTCATTTTTAGGGCAAATCG
AATTCGATCTTTTGGCAGAATGCTTAAGTTAATTGTATTGGCCGAATCCA
TTGGTAAAGCGTCTCACTTGTAATCTTTAAGTTTCACAATATGGCGAAGG
TTGCTGCTGCTCCTTCCAATTCTCTTCAAATGGTCGGAGGTTCTCATAAG
ATGGGCCTGACTGTCAAAAGGAAGACACCATCGGAGCTTCGA GGGGAGCAGTTGAAGCAGAAAAAAGTTA
CAGAGCTTGTAGATGAATCTCCGGCGGCTTTGTTTGGTTCTACAAGGTAA
AACCTTCCACAACTTCCTTTTTGTTTTTTTGTTTTTTTGTTTTGTTGTTT
TAAGGTGGTAGCTGAAATATTGATATTTGTCTTTCTGTGGTAACAATAGT
GAAGTGGGTAATGGGCTAAAGAAATCAGAATTATCGCGTAATCCGAGATA
CATTGACACCCGT ATGGATGAAGTTTATCCCGTCAAAAAATCCAGGTTTA
GGATGCTTTCAGGGAAAGAAAATGCTAAG GAAAATAGTTCAAAT
GAGCGGCCTGGCAGCCTGAAGAATCTTTCTCTGCTTTCAAATATTGCTGC
AAAGAAAGGAGATCAACACTCACT TCCTGGTAATAATGTTGCGTCAGCTGAAGCTTC
CAAAGATGGTGTGTTGGAAGCTCGTCAAATTATTGAAAAGTGTAGTCAAA
GTACATTCCGTAGTGTTACTGAACTTTCGCAGGGTAGTGAAAGATCATTT
GGCCTGGCTACTGTGGACATG GATAAAGCACTAAAAGGACTGGTTGCCTGTGAACCTGCTCCTGAT
TTACCTTCTAGTTCTTCTGAGAGATTAGATGATCCTTCATCAACCTATTC
GGGCAATTTTCGATCTGAATTCCATATTCCTGGCCAAAAGGTTCCTCTGG
ATTTTACCCTGAAAACTTACATGCGAGTGGTTTCTTCTTCGTCTGTGAGT
TG GATTCATAGG
TCAATCATGAGTTGTGTCTACAATGGTTTGCCACAGTCCACATCCCATTC
TGGTTATGCTGATGATAGCAACAGCTCAGGGATTACATTGGCTTCCCAAA
TCTTAAGTCCTAAGGCCTTGCATTCATGGGTTTACCCTCAATCTTCCCTG
CCACCTTCTCTCATATCCATATTGACCTCATCAGCAACAGAGGGAG TGGAGATGG
ATTTCTTAAGAAAACGGCAACTTGCATGGGAAGAATCATTTCGAAGTCTT
TACTACATGCTTAGGAAGAAAGTTTGCAATATCTTTTATG TTTG
TACTTCATATTTTGTGGTTATGTTCATCGGTGCTGATGGCTTGGGGACAA
ACCAGCAGTCATGCTATGCATATATTTCCCAGTCAACCAGAGGCTTGAGG
TCTTCACTAAAAGAACAT GATGTTTGTTTCTCTATGCCTCTTTGCCGGTCTAAAG
TCGAACAAATCACCACGGAAGATCTGGTCGAGCTCTCAGAAATCGAGAAG
CATAATCTAGGCCAG ACTCGACGGTCAAGTTCTTTGTCTGACATTGATAATACTTCCCAATCTT
TGCTGGCATTCAGTGATAATAAGAACGTACATGCTTTATATGATTTTTTA
TTAAATTATAG ATCTTTCTTGACTTTTTTGACTGCTTCAGATGTTCCCGTG
CTGTATTCACCTGTGCCATTCCAAAATGCAACTCTTTCTGCCCCAGAG GTTACCTGTATGGAGATGAAGAGATCTGACCAAATTGCTGCT
CTTCCTAAAGGATCTATTGCAAAAGATTCCGAAACCACTCATAATTCATC
TCTGGGTTTCTGCTGCAGCATTGAAATTAAGGGTACATGTCTTCCACCGT
GGATTATCTGCAATATATGTTCACTCATGGGCTCTGAAGGGAGGAACTTT
GAGGCAAG CCTTACGACAG
AGCGTACCTCAGTTGGCTTGAATGTTGCACTCGGGGCAGTTAGTGACAAA
TCTGATGCTCAAACCACAGATGGTGAAGGCTTGCAGTCAATCATCCCAGC
TTTTGGAATTCCAGATGCTGTCATTAGTCCTCACATGCGTTCAGGTTTCT
TGAAAGGCTTGGAACACTGTAATGGTTCATATACAGCTTCTCTCTGTCCT
GTATGA TCTACTCTTTCCTATCTGTGATGGAGATGCAACAATGAGGAAGT
TGTGCTCACTATATCATTTTGTGATCTGATTTGAACCCTTAATCCTCCCT
TCATGGCCCATGTCCTTATATTATCTTATTCAAACAGATTGTCATTGATT
AATGCCATGGTAAAATTTGTTTTGTTTCTTGCCTTCGGAAGTGTTCTAAG
ATTCAAGATTAATTTTCCATGCTATAAAACTGGAGTCTCGATAGAAGCTT
CCAATTTCCAAAATCCAAAGATATTTGGGCTTTTCTTGTTTTAAGAGTTA
ATACTATTTGAAGTTTTTCAGTGCA back to top Coding sequence (CDS) from alignment at chr6:14773882..14778556-
>Cs6g13300.2_Hzau_Valencia_v1.0 ID=Cs6g13300.2_Hzau_Valencia_v1.0; Name=Cs6g13300.2; organism=Citrus sinensis; type=CDS; length=1650bp; location=Sequence derived from: chr6:14773882..14778556- (Citrus sinensis back to top
