Cs6g13870.1, Cs6g13870.1_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Cs6g13870.1 vs. DB:SwissProt
Match: LOG7_ARATH (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 OS=Arabidopsis thaliana OX=3702 GN=LOG7 PE=1 SV=2) HSP 1 Score: 347.436 bits (890), Expect = 5.890e-122 Identity = 181/215 (84.19%), Postives = 200/215 (93.02%), Query Frame = 1 Query: 1 MEDAKSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDXXXXXXXXXXXXXXSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKQLVRQLEEYVPEHDEVTSKLVWE--DRLNYVSESEIAT 639
ME+ KSRFKRICVFCGSSSGKK +YQEAA++LG ELVER++DLVYGGGSVGLMGLVSQAVH GGRHVLGVIPKTL PREITG+ +GEVK V+DMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDG+YNSLL+F+DKAVDEGFISP ARRII+SAP AK+LVRQLEEY PE DE+TSKLVW+ DR++YV SE+AT
Sbjct: 1 MEETKSRFKRICVFCGSSSGKKPSYQEAAIQLGNELVERRIDLVYGGGSVGLMGLVSQAVHHGGRHVLGVIPKTLMPREITGETIGEVKAVADMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGYYNSLLTFIDKAVDEGFISPMARRIIVSAPNAKELVRQLEEYEPEFDEITSKLVWDEVDRISYVPGSEVAT 215
BLAST of Cs6g13870.1 vs. DB:SwissProt
Match: LOG3_ARATH (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana OX=3702 GN=LOG3 PE=1 SV=1) HSP 1 Score: 313.923 bits (803), Expect = 1.214e-108 Identity = 160/205 (78.05%), Postives = 187/205 (91.22%), Query Frame = 1 Query: 13 KSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDXXXXXXXXXXXXXXSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKQLVRQLEEYVPEHDEVTSKLVWE-DRLNYVSE 624
KS+F+RICVFCGSS GKK++YQ+AAV+LG ELV R +DLVYGGGS+GLMGLVSQAVHDGGRHV+G+IPKTL PRE+TG+ VGEV+ V+DMHQRKAEMA+ +DAFIALPGGYGTLEELLEVITWAQLGIH KPVGLLNVDG+YNSLLSF+DKAV+EGFISPTAR II+SAPTAK+LV++LEEY P H+ V +KL WE +R+ Y SE
Sbjct: 10 KSKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGIIPKTLMPRELTGETVGEVRAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTAKELVKKLEEYAPCHERVATKLCWEMERIGYSSE 214
BLAST of Cs6g13870.1 vs. DB:SwissProt
Match: LOG4_ARATH (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 OS=Arabidopsis thaliana OX=3702 GN=LOG4 PE=1 SV=1) HSP 1 Score: 310.457 bits (794), Expect = 2.848e-107 Identity = 161/205 (78.54%), Postives = 186/205 (90.73%), Query Frame = 1 Query: 13 KSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDXXXXXXXXXXXXXXSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKQLVRQLEEYVPEHDEVTSKLVWE-DRLNYVSE 624
KS+F RICVFCGSS GKK++YQ+AAV+LG ELV R +DLVYGGGS+GLMGLVSQAVHDGGRHV+GVIPKTL PRE+TG+ VGEV+ V+DMHQRKAEMAR +DAFIALPGGYGTLEELLEVITWAQLGIH KPVGLLNVDG+YNSLLSF+DKAV+EGFIS AR+IIISAPTAK+LV++LEEY P H+ V +KL WE +R++Y SE
Sbjct: 10 KSKFGRICVFCGSSQGKKSSYQDAAVDLGNELVLRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVRAVADMHQRKAEMARHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISTNARQIIISAPTAKELVKKLEEYSPCHESVATKLCWEIERIDYSSE 214
BLAST of Cs6g13870.1 vs. DB:SwissProt
Match: LOG2_ARATH (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1) HSP 1 Score: 309.301 bits (791), Expect = 6.042e-107 Identity = 156/201 (77.61%), Postives = 181/201 (90.05%), Query Frame = 1 Query: 1 MEDAKSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDXXXXXXXXXXXXXXSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKQLVRQLEEYVPEHDEVTSKLVWED 603
ME+ KSRF+RICVFCGSSSG K TY +AA++L +LVER +DLVYGGGSVGLMGL+SQAVHDGGRHVLG+IPK+L PREITG+ +GEV TVS MHQRKAEM RQADAFIALPGGYGT EELLEVITW+QLGIH KPVGLLNVDGFY+SLL+F+DKAVDEGF+S TARRII+SAP A QL++ LEEYVP+HD+ SK+VW++
Sbjct: 1 MEETKSRFRRICVFCGSSSGNKTTYHDAALQLAHQLVERNIDLVYGGGSVGLMGLISQAVHDGGRHVLGIIPKSLAPREITGESIGEVITVSTMHQRKAEMGRQADAFIALPGGYGTFEELLEVITWSQLGIHTKPVGLLNVDGFYDSLLTFIDKAVDEGFVSSTARRIIVSAPNAPQLLQLLEEYVPKHDDFVSKMVWDN 201
BLAST of Cs6g13870.1 vs. DB:SwissProt
Match: LOGL6_ORYSJ (Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL6 OS=Oryza sativa subsp. japonica OX=39947 GN=LOGL6 PE=2 SV=1) HSP 1 Score: 302.753 bits (774), Expect = 7.960e-104 Identity = 158/208 (75.96%), Postives = 183/208 (87.98%), Query Frame = 1 Query: 13 KSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDXXXXXXXXXXXXXXSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKQLVRQLEEYVPEHDEVTSKLVWE-DRLNYVSESEI 633
+SRF+RICVFCGSS GKK +YQ+AAVELGKELV R +DLVYGGGSVGLMGLVSQAV++GGRHV+GVIPKTL PREITG+ VGEVK V+DMHQRKAEMARQ+DAFIALPGGYGTLEELLEVI WAQLGIH KPVGLLNVDG+YNSLLSF+DKAV+E FISP+AR II+ APT K+L+ +LE Y P HD+V K+ WE ++++Y EI
Sbjct: 24 QSRFRRICVFCGSSQGKKKSYQDAAVELGKELVARNIDLVYGGGSVGLMGLVSQAVYNGGRHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMARQSDAFIALPGGYGTLEELLEVIAWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEEFISPSARHIIVLAPTPKELLEKLEAYSPRHDKVVPKMQWEMEKMSYCKSCEI 231
BLAST of Cs6g13870.1 vs. DB:SwissProt
Match: LOGL2_ORYSJ (Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOGL2 PE=3 SV=1) HSP 1 Score: 301.597 bits (771), Expect = 2.413e-103 Identity = 156/208 (75.00%), Postives = 184/208 (88.46%), Query Frame = 1 Query: 13 KSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDXXXXXXXXXXXXXXSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKQLVRQLEEYVPEHDEVTSKLVWE-DRLNYVSESEI 633
+SRF+R+CVFCGSS GKK YQ+AA+ELGKELV R +DLVYGGGSVGLMGLVSQAVH+GGRHV+GVIPKTL PREI+G+ VGEVK VSDMHQRKAEMARQ+DAFIALPGGYGTLEELLEVI WAQLGIH KPVGLLNVDG+YN LLSF+DKAV+EGFI P+AR II+ APT K+L+ +LEEY P+H++V SK+ WE ++++Y +I
Sbjct: 17 QSRFRRVCVFCGSSHGKKKIYQDAAIELGKELVARNIDLVYGGGSVGLMGLVSQAVHNGGRHVIGVIPKTLMPREISGETVGEVKAVSDMHQRKAEMARQSDAFIALPGGYGTLEELLEVIAWAQLGIHDKPVGLLNVDGYYNPLLSFIDKAVEEGFIRPSARHIIVLAPTPKELIEKLEEYSPQHEKVVSKMKWEMEQMSYPQNYDI 224
BLAST of Cs6g13870.1 vs. DB:SwissProt
Match: LOG1_ARATH (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 OS=Arabidopsis thaliana OX=3702 GN=LOG1 PE=1 SV=1) HSP 1 Score: 300.056 bits (767), Expect = 3.135e-103 Identity = 152/198 (76.77%), Postives = 181/198 (91.41%), Query Frame = 1 Query: 7 DAKSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDXXXXXXXXXXXXXXSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKQLVRQLEEYVPEHDEVTSKLVWE 600
+ +S+FKRICVFCGSS+G K +Y++AA+ELG ELV R +DLVYGGGS+GLMGL+SQAV +GGRHV+GVIPKTL PREITG+ VGEVK V+DMHQRKAEMA+ +DAFIALPGGYGTLEELLEVITWAQLGIH KPVGLLNV+G+YNSLLSF+DKAV+EGFISPTAR II+SAP+AK+LV++LE+YVP H++V SK WE
Sbjct: 2 EIESKFKRICVFCGSSAGNKVSYKDAAIELGTELVSRNIDLVYGGGSIGLMGLISQAVFNGGRHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVEGYYNSLLSFIDKAVEEGFISPTARHIIVSAPSAKELVKKLEDYVPRHEKVASKKSWE 199
BLAST of Cs6g13870.1 vs. DB:SwissProt
Match: LOGL3_ORYSJ (Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOGL3 PE=2 SV=1) HSP 1 Score: 294.278 bits (752), Expect = 4.559e-101 Identity = 154/196 (78.57%), Postives = 176/196 (89.80%), Query Frame = 1 Query: 13 KSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDXXXXXXXXXXXXXXSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKQLVRQLEEYVPEHDEVTSKLVWE 600
+SRFKR CVFCGSS G K TY++AAV+L KELV R +DLVYGGGS+GLMGLVSQAV+DGGRHV+GVIPKTL EI G+ VGEV+ VSDMHQRKAEMARQ+DAFIALPGGYGTLEELLEVITWAQLGIH KPVGLLNVDG+YNSLL+F+D+AV+EGFISP+ARRII+SAPTA++L+ +LEEYVP HD V S L WE
Sbjct: 10 ESRFKRTCVFCGSSQGNKTTYRDAAVDLAKELVARGIDLVYGGGSIGLMGLVSQAVYDGGRHVIGVIPKTLMTPEIIGETVGEVRPVSDMHQRKAEMARQSDAFIALPGGYGTLEELLEVITWAQLGIHHKPVGLLNVDGYYNSLLTFIDQAVEEGFISPSARRIIVSAPTAQELMDKLEEYVPYHDRVASGLNWE 205
BLAST of Cs6g13870.1 vs. DB:SwissProt
Match: LOGLA_ORYSJ (Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10 OS=Oryza sativa subsp. japonica OX=39947 GN=LOGL10 PE=2 SV=1) HSP 1 Score: 293.893 bits (751), Expect = 5.317e-101 Identity = 153/196 (78.06%), Postives = 176/196 (89.80%), Query Frame = 1 Query: 13 KSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDXXXXXXXXXXXXXXSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKQLVRQLEEYVPEHDEVTSKLVWE 600
+SRFKRICVFCGSS GKK +Y +AA+ELG ELV R +DLVYGGGS+GLMGLVSQAV DGGRHV+GVIPKTL EI+G+ VGEV+ V+DMHQRKAEMARQ+DAFIALPGGYGTLEELLEVITWAQLGIH KPVGLLNVDG+YNSLL+F+DKAV+EGFI+ +ARRII+ APTA++L+ +LEEYVP HD V SKL WE
Sbjct: 3 QSRFKRICVFCGSSQGKKRSYHDAAIELGNELVARSIDLVYGGGSIGLMGLVSQAVFDGGRHVIGVIPKTLMTPEISGETVGEVRPVADMHQRKAEMARQSDAFIALPGGYGTLEELLEVITWAQLGIHHKPVGLLNVDGYYNSLLTFIDKAVEEGFINTSARRIIVMAPTAEELMDKLEEYVPYHDRVASKLNWE 198
BLAST of Cs6g13870.1 vs. DB:SwissProt
Match: LOG_ORYSJ (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG OS=Oryza sativa subsp. japonica OX=39947 GN=LOG PE=1 SV=1) HSP 1 Score: 294.278 bits (752), Expect = 1.567e-100 Identity = 154/209 (73.68%), Postives = 184/209 (88.04%), Query Frame = 1 Query: 13 KSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDXXXXXXXXXXXXXXSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKQLVRQLEEYVPEHDEVTSKLVWEDRLNYVSESEIAT 639
+SRF+RICV+CGS+ G+KA+YQ+AAVELGKELVER +DLVYGGGS+GLMGLVS AVHDGGRHV+GVIPK+L PRE+TG+PVGEV+ VS MH+RKAEMAR ADAFIALPGGYGTLEELLEVITWAQLGIH+KPVGLLNVDGFY+ LSF+D AV EGFI+ ARRIIISAPTA++LV +LEEYVPE++ LVW+D++ + ++ T
Sbjct: 32 RSRFRRICVYCGSAKGRKASYQDAAVELGKELVERGIDLVYGGGSIGLMGLVSHAVHDGGRHVIGVIPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPGGYGTLEELLEVITWAQLGIHKKPVGLLNVDGFYDPFLSFIDMAVSEGFIAEDARRIIISAPTARELVLKLEEYVPEYE---VGLVWDDQMPHSFAPDLET 237 The following BLAST results are available for this feature:
BLAST of Cs6g13870.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cs6g13870.1_Hzau_Valencia_v1.0 ID=Cs6g13870.1_Hzau_Valencia_v1.0; Name=Cs6g13870.1; organism=Citrus sinensis; type=mRNA; length=1108bpback to top protein sequence of Cs6g13870.1 >Cs6g13870.1_Hzau_Valencia_v2.0-protein ID=Cs6g13870.1_Hzau_Valencia_v2.0-protein; Name=Cs6g13870.1; organism=Citrus sinensis; type=polypeptide; length=214bpback to top mRNA from alignment at chr6:15274870..15278780+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=3911bp; location=Sequence derived from: chr6:15274870..15278780+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at chr6:15274870..15278780+ >Cs6g13870.1_Hzau_Valencia_v1.0 ID=Cs6g13870.1_Hzau_Valencia_v1.0; Name=Cs6g13870.1; organism=Citrus sinensis; type=CDS; length=642bp; location=Sequence derived from: chr6:15274870..15278780+ (Citrus sinensisback to top |