Transcript Overview
Name | Cs6g14810.1 |
Unique Name | Cs6g14810.1_Hzau_Valencia_v1.0 |
Type | mRNA |
Organism | Citrus sinensis (Sweet orange) |
Sequence length | 1482 |
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Cs6g14810.1 | Cs6g14810.1_Hzau_Valencia_v2.0-protein | Citrus sinensis | polypeptide |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Cs6g14810.1.exon.1 | Cs6g14810.1.exon.1_Hzau_Valencia_v1.0 | Citrus sinensis | exon |
Cs6g14810.1.exon.2 | Cs6g14810.1.exon.2_Hzau_Valencia_v1.0 | Citrus sinensis | exon |
Cs6g14810.1.exon.3 | Cs6g14810.1.exon.3_Hzau_Valencia_v1.0 | Citrus sinensis | exon |
Cs6g14810.1.exon.4 | Cs6g14810.1.exon.4_Hzau_Valencia_v1.0 | Citrus sinensis | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Cs6g14810.1.cds.1 | Cs6g14810.1.cds.1_Hzau_Valencia_v1.0 | Citrus sinensis | CDS |
Cs6g14810.1.cds.2 | Cs6g14810.1.cds.2_Hzau_Valencia_v1.0 | Citrus sinensis | CDS |
Cs6g14810.1.cds.3 | Cs6g14810.1.cds.3_Hzau_Valencia_v1.0 | Citrus sinensis | CDS |
Cs6g14810.1.cds.4 | Cs6g14810.1.cds.4_Hzau_Valencia_v1.0 | Citrus sinensis | CDS |
Homology
The following BLAST results are available for this feature:
BLAST of Cs6g14810.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 ( C. sinensis v2.0, HZAU CDS)
Total hits: 0
Match Name | E-value | Identity | Description | |
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InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 57..77 |
None | No IPR available | COILS | Coil | Coil | coord: 306..326 |
None | No IPR available | PANTHER | PTHR31549 | FAMILY NOT NAMED | coord: 28..83 |
None | No IPR available | PANTHER | PTHR31549:SF40 | SUBFAMILY NOT NAMED | coord: 337..464 |
None | No IPR available | PANTHER | PTHR31549 | FAMILY NOT NAMED | coord: 337..464 coord: 89..215 |
None | No IPR available | PANTHER | PTHR31549:SF40 | SUBFAMILY NOT NAMED | coord: 276..332 |
None | No IPR available | PANTHER | PTHR31549:SF40 | SUBFAMILY NOT NAMED | coord: 28..83 coord: 89..215 |
None | No IPR available | PANTHER | PTHR31549 | FAMILY NOT NAMED | coord: 276..332 |
IPR004158 | Protein of unknown function DUF247, plant | PFAM | PF03140 | DUF247 | coord: 282..330 e-value: 3.9E-9 score: 36.2 coord: 33..81 e-value: 3.9E-9 score: 36.2 coord: 89..207 e-value: 1.2E-9 score: 37.9 coord: 338..456 e-value: 8.1E-10 score: 38.4 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cs6g14810.1_Hzau_Valencia_v1.0 ID=Cs6g14810.1_Hzau_Valencia_v1.0; Name=Cs6g14810.1; organism=Citrus sinensis; type=mRNA; length=1482bp ATGAATAATTCAATAACAATTGTTGCCATTGAAGAACGAAAAGAGTTGAT AATTGACGTTGGTGAAAACTTGGAGCCCCGAGCAAAGCGTTGTACTTACA GGGTCCCTACAGATCTCCGCCAAATTAATGAAGAAGCCCACCCTCCCAGG GTGATATCAATAGGCCCGCTCCAACACGGTAAAGACGAATTGGCTGATAA GGAAAAGCAGAAAATAAGATATAAAAGAGAATATTGTAAAAGAATTACAC CTGAGAAATGGCAACAAATTCCATTCCTCGTTGTGGATGGATTATACAAC TTGGCGTTCCCAAACCTAGGCCCTGGAAAGGGCTATCCTTCCTTCATTTT GCTTTCTTCTCTGTTCTTAAGTCAAGGTAAGTCCGATGATGAAATATATG TCGAAGTTGCGATCGAAGTTAAACACTTGACCGATTTGGGTAGATATTTT GTTACAATCAAGTACCTAGATCCACAATCCATAGAATGTATCAGAGATTT ACCTTGTGCTTTCAAATTGCAAGAGTCAGGAATGAAGTTTAATGGCACTG AAGGAGAATGCATCCTTGACGTAAGATTTGTAAAGAAGAAGCTCCGGATC CCGTTCTTGAAATTTGACGAGCTGCAGATTCCACGGATTGAAGTAACACC ACGGAATGCTAGATGTGGAACTTGGTGGCCTTGGACCAGTGTCACTATCC GGACAAAACCCTCGTGCCCAATTATAGACTTGAAACTTCGAGGTGGAATG AATAATTCAATAACAATTGTTGCCATTGAAGAACGAAAAGAGTTGATAAT TGACGTTGGTGAAAACTTGGAGCCCCGAGCAAAGCGTTGTACTTACAGGG TCCCTACAGATCTCCGCCAAATTAATGAAGAAGCCCACCCTCCCAGGGTG ATATCAATAGGCCCGCTCCAACACGGTAAAGACGAATTGGCTGATAAGGA AAAGCAGAAAATAAGATATAAAAGAGAATATTGTAAAAGAATTACACCTG AGAAATGGCAACAAATTCCATTCCTCGTTGTGGATGGATTATACAACTTG GCGTTCCCAAACCTAGGCACTGGAAAGGGTTATCTTTCCTTCATTTTGCT TTCTTCTCTGTTCTTAAGTCAAGGTAAGTCCGATGATGAAATATATGTCG AAGTTGCGATCGAAGTTAAACACTTGACCGATTTGGGTAGATATTTTGTT ACAATCAAGTACCTAGATCCACAATCCATAGAATGTATCAGAGATTTACC TTGTGCTTTCAAATTGCAAGAGTCAGGAATGAAGTTTAATGGCACTGAAG GAGAATGCATCCTTGACGTAAGATTTGTAAAGAAGAAGCTCCGGATCCCG TTCTTGAAATTTGACGAGCTGCAGATTCCACGGATTGAAGTAACACCACG GAATGCTAGATGTGGAACTTGGTGGCCTTGGACCAGTGTCACTATCCGGA CAAAACCCTCGTGCCCAATTATAGTGATCTAA back to topprotein sequence of Cs6g14810.1 >Cs6g14810.1_Hzau_Valencia_v2.0-protein ID=Cs6g14810.1_Hzau_Valencia_v2.0-protein; Name=Cs6g14810.1; organism=Citrus sinensis; type=polypeptide; length=494bp MNNSITIVAIEERKELIIDVGENLEPRAKRCTYRVPTDLRQINEEAHPPR VISIGPLQHGKDELADKEKQKIRYKREYCKRITPEKWQQIPFLVVDGLYN LAFPNLGPGKGYPSFILLSSLFLSQGKSDDEIYVEVAIEVKHLTDLGRYF VTIKYLDPQSIECIRDLPCAFKLQESGMKFNGTEGECILDVRFVKKKLRI PFLKFDELQIPRIEVTPRNARCGTWWPWTSVTIRTKPSCPIIDLKLRGGM NNSITIVAIEERKELIIDVGENLEPRAKRCTYRVPTDLRQINEEAHPPRV ISIGPLQHGKDELADKEKQKIRYKREYCKRITPEKWQQIPFLVVDGLYNL AFPNLGTGKGYLSFILLSSLFLSQGKSDDEIYVEVAIEVKHLTDLGRYFV TIKYLDPQSIECIRDLPCAFKLQESGMKFNGTEGECILDVRFVKKKLRIP FLKFDELQIPRIEVTPRNARCGTWWPWTSVTIRTKPSCPIIVI* back to topmRNA from alignment at chr6:15915447..15917593+ Legend: mRNApolypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. > ID=; Name=; organism= ; type=; length=2147bp; location=Sequence derived from: chr6:15915447..15917593+ (Citrus sinensis ATGAATAATTCAATAACAATTGTTGCCATTGAAGAACGAAAAGAGTTGAT
AATTGACGTTGGTGAAAACTTGGAGCCCCGAGCAAAGCGTTGTACTTACA
GGGTCCCTACAGATCTCCGCCAAATTAATGAAGAAGCCCACCCTCCCAGG
GTGATATCAATAGGCCCGCTCCAACACGGTAAAGACGAATTGGCTGATAA
GGAAAAGCAGAAAATAAGATATAAAAGAGAATATTGTAAAAGAATTACAC
CTGAGAAATGGCAACAAGTTATAAACTTCATAGAGGAAAACGAAAAAAAA
TTCCGCAATAGTTATGAAGAAAACTCTACGCTCGAAAAACTTGAGTTCAT
AACCATGATTCTATATGATGTTGTGTTTATCGTTGAACTCTTTTTGAGAA
AATATAGAAATGAAAGTGATTTTCTGCTAGATAGACCAGGCATTTTAGCC
ACTATTTGGCTGGACTTGATATTACTTGAAATCAGATTCCATTCCTCGTT
GTGGATGGATTATACAACTTGGCGTTCCCAAACCTAGGCCCTGGAAAGGG
CTATCCTTCCTTCATTTTGCTTTCTTCTCTGTTCTTAAGTCAAGGTAAGT
CCGATGATGAAATATATGTCGAAGTTGCGATCGAAGTTAAACACTTGACC
GATTTGGGTAGATATTTTGTTACAATCAAGTACCTAGATCCACAATCCAT
AGAATGTATCAGAGATTTACCTTGTGCTTTCAAATTGCAAGAGTCAGGAA
TGAAGTTTAATGGCACTGAAGGAGAATGCATCCTTGACGTAAGATTTGTA
AAGAAGAAGCTCCGGATCCCGTTCTTGAAATTTGACGAGCTGCAGATTCC
ACGGATTGAAGTAACACCACGGAATGCTAGATGTGGAACTTGGTGGCCTT
GGACCAGTGTCACTATCCGGACAAAACCCTCGTGCCCAATTATAGTGATC
TAATGGATATCCCTATCGACACCGAAGAAGATGTAAATTTGCTTGTTGAA
GTAGGGATTACATCCAATAATATGGGCGAAAGAGCAAGAATAGCGAAGAT
GTTTAATGCACTCCGCCAACAAATTTCGATCACTCCTTCCACTCATTAAA
ATGACATCATCAAGGATCTGGAAGACACTATGATAGTTACTAATCACCAT
ATTTTCTGTTTTGTTATGTTTAGGACTTGAAACTTCGAGGTGGAATGAAT
AATTCAATAACAATTGTTGCCATTGAAGAACGAAAAGAGTTGATAATTGA
CGTTGGTGAAAACTTGGAGCCCCGAGCAAAGCGTTGTACTTACAGGGTCC
CTACAGATCTCCGCCAAATTAATGAAGAAGCCCACCCTCCCAGGGTGATA
TCAATAGGCCCGCTCCAACACGGTAAAGACGAATTGGCTGATAAGGAAAA
GCAGAAAATAAGATATAAAAGAGAATATTGTAAAAGAATTACACCTGAGA
AATGGCAACAAGTTATAAACTTCATAGAGGAAAACGAAAAAAAATTCCGC
AATAGTTATGAAGAAAACTCTACGCTCGAAAAACTTGAGTTCATAACCAT
GATTCTATATGATGTTGTGTTTATCGTTGAACTCTTTTTGAGAAAATATA
GAAATGAAAGTGATTTTCTGCTAGATAGACCAGGCATTTTAGCCACTATT
TGGCTGGACTTGATATTACTTGAAATCAGATTCCATTCCTCGTTGTGGAT
GGATTATACAACTTGGCGTTCCCAAACCTAGGCACTGGAAAGGGTTATCT
TTCCTTCATTTTGCTTTCTTCTCTGTTCTTAAGTCAAGGTAAGTCCGATG
ATGAAATATATGTCGAAGTTGCGATCGAAGTTAAACACTTGACCGATTTG
GGTAGATATTTTGTTACAATCAAGTACCTAGATCCACAATCCATAGAATG
TATCAGAGATTTACCTTGTGCTTTCAAATTGCAAGAGTCAGGAATGAAGT
TTAATGGCACTGAAGGAGAATGCATCCTTGACGTAAGATTTGTAAAGAAG
AAGCTCCGGATCCCGTTCTTGAAATTTGACGAGCTGCAGATTCCACGGAT
TGAAGTAACACCACGGAATGCTAGATGTGGAACTTGGTGGCCTTGGACCA
GTGTCACTATCCGGACAAAACCCTCGTGCCCAATTATAGTGATCTAA back to topCoding sequence (CDS) from alignment at chr6:15915447..15917593+ >Cs6g14810.1_Hzau_Valencia_v1.0 ID=Cs6g14810.1_Hzau_Valencia_v1.0; Name=Cs6g14810.1; organism=Citrus sinensis; type=CDS; length=1482bp; location=Sequence derived from: chr6:15915447..15917593+ (Citrus sinensis ATGAATAATTCAATAACAATTGTTGCCATTGAAGAACGAAAAGAGTTGAT AATTGACGTTGGTGAAAACTTGGAGCCCCGAGCAAAGCGTTGTACTTACA GGGTCCCTACAGATCTCCGCCAAATTAATGAAGAAGCCCACCCTCCCAGG GTGATATCAATAGGCCCGCTCCAACACGGTAAAGACGAATTGGCTGATAA GGAAAAGCAGAAAATAAGATATAAAAGAGAATATTGTAAAAGAATTACAC CTGAGAAATGGCAACAAATTCCATTCCTCGTTGTGGATGGATTATACAAC TTGGCGTTCCCAAACCTAGGCCCTGGAAAGGGCTATCCTTCCTTCATTTT GCTTTCTTCTCTGTTCTTAAGTCAAGGTAAGTCCGATGATGAAATATATG TCGAAGTTGCGATCGAAGTTAAACACTTGACCGATTTGGGTAGATATTTT GTTACAATCAAGTACCTAGATCCACAATCCATAGAATGTATCAGAGATTT ACCTTGTGCTTTCAAATTGCAAGAGTCAGGAATGAAGTTTAATGGCACTG AAGGAGAATGCATCCTTGACGTAAGATTTGTAAAGAAGAAGCTCCGGATC CCGTTCTTGAAATTTGACGAGCTGCAGATTCCACGGATTGAAGTAACACC ACGGAATGCTAGATGTGGAACTTGGTGGCCTTGGACCAGTGTCACTATCC GGACAAAACCCTCGTGCCCAATTATAGACTTGAAACTTCGAGGTGGAATG AATAATTCAATAACAATTGTTGCCATTGAAGAACGAAAAGAGTTGATAAT TGACGTTGGTGAAAACTTGGAGCCCCGAGCAAAGCGTTGTACTTACAGGG TCCCTACAGATCTCCGCCAAATTAATGAAGAAGCCCACCCTCCCAGGGTG ATATCAATAGGCCCGCTCCAACACGGTAAAGACGAATTGGCTGATAAGGA AAAGCAGAAAATAAGATATAAAAGAGAATATTGTAAAAGAATTACACCTG AGAAATGGCAACAAATTCCATTCCTCGTTGTGGATGGATTATACAACTTG GCGTTCCCAAACCTAGGCACTGGAAAGGGTTATCTTTCCTTCATTTTGCT TTCTTCTCTGTTCTTAAGTCAAGGTAAGTCCGATGATGAAATATATGTCG AAGTTGCGATCGAAGTTAAACACTTGACCGATTTGGGTAGATATTTTGTT ACAATCAAGTACCTAGATCCACAATCCATAGAATGTATCAGAGATTTACC TTGTGCTTTCAAATTGCAAGAGTCAGGAATGAAGTTTAATGGCACTGAAG GAGAATGCATCCTTGACGTAAGATTTGTAAAGAAGAAGCTCCGGATCCCG TTCTTGAAATTTGACGAGCTGCAGATTCCACGGATTGAAGTAACACCACG GAATGCTAGATGTGGAACTTGGTGGCCTTGGACCAGTGTCACTATCCGGA CAAAACCCTCGTGCCCAATTATAGTGATCTAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term | Definition |
IPR004158 | DUF247_pln |
|