Cs6g14930.1, Cs6g14930.1_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Cs6g14930.1 vs. DB:SwissProt
Match: TMN4_ARATH (Transmembrane 9 superfamily member 4 OS=Arabidopsis thaliana OX=3702 GN=TMN4 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.188e-28 Identity = 81/251 (32.27%), Postives = 126/251 (50.20%), Query Frame = 1 Query: 211 YFDLPFCPAGDPILNRMKSTEEIVKGDCFTKTQYELRFKVETVDKIICEKNLKTHEVRKFRDAISKEVDYHMYYNNILLRGVVGIVKEKSLTVDSRTRYYLVKHINFYPYYYENKVVGIYALPDIKSAVDITEDAEISVNFTYSVNWKVKSNPTNSVHQNETAIMRDSEDKESLIFWGAMF--CIWLMLLI----VAIDPYLQNYFDRYP---PRVITLTENGIRYKVHGDECWRPPYSSLLGAILAIGAQ 936 YFDLPFC + P+ + ++ E++ GD Y+L F E ++ C K L +V KFRD I+K+ + MYY+++ + G +G V ++ T S +YYL H+ F +Y +++V+ I D VD+TED E+ V+FTY+V WK P + E + S I W ++ C+ ++LL + L+N F +Y V E G + +HGD P + SLL A L G Q Sbjct: 57 YFDLPFCSSA-PVKEKKEALGEVLNGDRLVSAPYKLEFLGEKNSEVACRKRLSREDVAKFRDVIAKDYYFQMYYDDLPIWGFLGKVVKEGKTDPSEYKYYLFNHLQFEIFYNKDRVIEIIVRTDQNFLVDLTEDKEVQVDFTYTVRWKETEIPFEK--RMEKYSLASSMPHHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFVKYAHDEEAVDDQEETGWKL-IHGDVFRFPKHKSLLAAALGSGTQ 303
BLAST of Cs6g14930.1 vs. DB:SwissProt
Match: TMN2_ARATH (Transmembrane 9 superfamily member 2 OS=Arabidopsis thaliana OX=3702 GN=TMN2 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.364e-28 Identity = 90/288 (31.25%), Postives = 140/288 (48.61%), Query Frame = 1 Query: 121 HQLKEGDLICSLAKFFSVPM----AGDQENGAKSY--FDLPFC-PAGDPILNRMKSTEEIVKGDCFTKTQYELRFKVETVDKIICEKNLKTHEVRKFRDAISKEVDYHMYYNNILLRGVVGIVKEKSLTVDSRTRYYLVKHINFYPYYYENKVVGIYALPDIKSAVDITEDAEISVNFTYSVNWKVKSNPTNSVHQNETAIMRDSEDKESLIFWGAMF--CIWLMLLI----VAIDPYLQNYFDRYPP---RVITLTENGIRYKVHGDECWRPPYSSLLGAILAIGAQ 936 H+ KEGD +VP+ G N +++Y FDLPFC P G + + ++ E++ GD Y+L F+ E ++ C K L EV++FR A+ K+ + MYY+++ + G +G V + + S +Y+L KHI F Y +++V+ I A D S VD+TED E+ F Y+V WK P + E M S I W ++ C+ ++LL + L+N F +Y E G +Y +HGD P ++SL A L G Q Sbjct: 29 HRYKEGD---------TVPLYANKVGPFHNPSETYRYFDLPFCIPEG--VKEKKEALGEVLNGDRLVSAPYKLNFRDEKESEVYCNKKLSKEEVKQFRKAVEKDYYFQMYYDDLPIWGFIGKVDKDIKSDPSEFKYFLYKHIQFEILYNKDRVIEISARMDPHSLVDLTEDKEVDAEFMYTVKWKETETPFEK--RMEKYSMSSSLPHHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFMKYAQDEEAADDQEETGWKY-IHGDVFRFPTHNSLFAASLGSGTQ 302
BLAST of Cs6g14930.1 vs. DB:SwissProt
Match: TMN3_ARATH (Transmembrane 9 superfamily member 3 OS=Arabidopsis thaliana OX=3702 GN=TMN3 PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.393e-27 Identity = 90/288 (31.25%), Postives = 141/288 (48.96%), Query Frame = 1 Query: 121 HQLKEGDLICSLAKFFSVPM----AGDQENGAKSY--FDLPFC-PAGDPILNRMKSTEEIVKGDCFTKTQYELRFKVETVDKIICEKNLKTHEVRKFRDAISKEVDYHMYYNNILLRGVVGIVKEKSLTVDSRTRYYLVKHINFYPYYYENKVVGIYALPDIKSAVDITEDAEISVNFTYSVNWKVKSNPTNSVHQNETAIMRDSEDKESLIFWGAMF--CIWLMLLI----VAIDPYLQNYFDRYPP---RVITLTENGIRYKVHGDECWRPPYSSLLGAILAIGAQ 936 H+ K+GD SVP+ G N +++Y FDLPFC P G + ++ ++ E++ GD Y+L F+ E ++ C+K L EV FR A+ K+ + MYY+++ + G +G V ++S + S +Y+L KHI F Y +++V+ I A D S VD+TED E+ F Y+V W K T+ + + M S I W ++ C+ ++LL + L+N F +Y E G +Y +HGD P SL A L G Q Sbjct: 29 HRYKDGD---------SVPLYANKVGPFHNPSETYRYFDLPFCIPEG--VKDKKEALGEVLNGDRLVSAPYKLNFRDEKDSEVYCKKKLSREEVEHFRRAVEKDYYFQMYYDDLPIWGFIGKVDKESKSDPSEFKYFLYKHIQFEILYNKDRVIEINARMDPHSLVDLTEDKEVDAEFMYTVKW--KETETSFEKRMDKYAMSSSLPHHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFMKYAQDEEAADDQEETGWKY-IHGDVFRFPKNKSLFAASLGSGTQ 302
BLAST of Cs6g14930.1 vs. DB:SwissProt
Match: TMN5_ARATH (Transmembrane 9 superfamily member 5 OS=Arabidopsis thaliana OX=3702 GN=TMN5 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.689e-26 Identity = 72/252 (28.57%), Postives = 132/252 (52.38%), Query Frame = 1 Query: 211 YFDLPFCPAGDPILNRMKSTEEIVKGDCFTKTQYELRFKVETVDKIICEKNLKTHEVRKFRDAISKEVDYHMYYNNILLRGVVGIVKEKSLTVDSR-TRYYLVKHINFYPYYYENKVVGIYALPDIKSAVDITEDAEISVNFTYSVNWKVKSNPTNSVHQNETAIMRDSEDKESLIFWGAMFCIWLMLLIVAIDPYLQNYFDRYPPRVITLTENGIRYK-----VHGDECWRPPYSSLLGAILAIGAQQLLM 948 Y+DLPFC G P++ + ++ E++ GD + Y+L+F+ + ++C K L + ++ +FRD I+++ + MYY+++ L G VG V+ + T+YY+ H+ F Y +KV+ I + D VDI+E+ EI V FTYSV+W + S + + N+ + + + F+ + I +++L++ + +L + R ++ + R + VH D P S L AIL G Q L++ Sbjct: 54 YYDLPFCRRG-PVIEKQETLGEVLNGDRLMSSLYKLKFREDKTHFVLCRKRLTSSDIARFRDIIAQDYYFQMYYDDLPLWGFVGKVEGDYFGQGEKHTKYYIFSHLKFNVLYNADKVIEINSFSDPSYMVDISENTEIDVQFTYSVSWNLTSERSET-RMNKYSRASFHPISQKIHFFSFLNSITVVVLLIGLISFLFMRHLKNELRSYSIGDEEERKEAGWKLVHSDVFRCPRNISWLCAILGTGTQLLIL 303
BLAST of Cs6g14930.1 vs. DB:SwissProt
Match: PHG1B_DICDI (Putative phagocytic receptor 1b OS=Dictyostelium discoideum OX=44689 GN=phg1b PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.153e-18 Identity = 80/287 (27.87%), Postives = 124/287 (43.21%), Query Frame = 1 Query: 121 HQLKEGDLICSLAKFFSVPMAGDQENGAKSY--FDLPFCPAGDPILNRMKSTEEIVKGDCFTKTQYELRFKVETVDKIICEKNLKTHEVRKFRDAISKEVDYHMYYNNILLRGVVGIVKEKSLTVDSRTRYYLVKHINFYPYYYENKVVGIYALPDIKSAVDITEDAEISVNFTYSVNWKVKSNPTNSVHQNETAIMRDSEDKESLIFW----GAMFCIWLM--LLIVAIDPYLQNYFDRYPPRVITLTENGIRYK-------VHGDECWRPPYSSLLGAILAIGAQ 936 H KE D + F V G N ++Y + LPFC + K EI++GD + Y+ FK +K +CE LK ++ KF+ AI + M Y+++ + VG V + LT RYYL HI F Y ++V+ + + +++++ EI++ TYS W+ PT + + KE I W + F + L+ L + I L+N + RY T E Y+ VHGD PPY ++ A IG Q Sbjct: 27 HHFKENDEVP-----FYVNNVGPYSNPTETYEFYTLPFCKPSSISYKKTK-LGEILQGDSAVLSDYQFPFKSSFENKQLCEYTLKKEDIEKFKKAIGEYYYAEMIYDDLPIFSFVGTVDDSDLT---NIRYYLYNHIPFEFDYNGDQVIRVNIDTEHIKVIELSDQDEITLKLTYSAKWQ----PTEHEFSKRMDLYEEFFTKELEIHWLSVMNSFFLVVLLTAFLAIMIMKILKNDYSRYSK---TDEEEDSDYQEDYGWKLVHGDVFRFPPYKNVFSAFYGIGWQ 297
BLAST of Cs6g14930.1 vs. DB:SwissProt
Match: TM9S1_MOUSE (Transmembrane 9 superfamily member 1 OS=Mus musculus OX=10090 GN=Tm9sf1 PE=2 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 1.777e-13 Identity = 64/264 (24.24%), Postives = 122/264 (46.21%), Query Frame = 1 Query: 211 YFDLPFCPAGDPILNRMKSTEEIVKGDCFTKTQYELRFKVETVDKIICEKNLKTHEVRKFRDAISKEVDYHMYYNNILLRGVVGIVKEKSLTVDSRTRYYLVKHINFYPYYYENKVV-GIYALPDIK--SAVDITEDAEISVNFTYSVNWKVKS--NPTNSVHQNETAIMRDSEDKESLIFWGAMFCIWLMLLIVAI--DPYLQNYFDRYPPRVITLTENGIRYKVHGDECWR---------PPYSSLLGAILAIGAQQLLMYT 954 Y+ LP C + I ++ S E++ GD ++ YE+RF+ +I+C L + +V + R AI + + +++ +RG VG ++E S + L H++F+ ++ ++++ ++ D+K S + D + + TYSV W S + ++ ++ + + L +M ++L++ VA+ L+N RY T + GD W+ PPY LL A+L +GAQ L + T Sbjct: 61 YYQLPVC-CPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFLPHSH-KIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSLDGLRSDELLGLTHTYSVRWSETSVEHRSDRRRGDDGGFFPRTLEIHWLSIINSMVLVFLLVGFVAVILMRVLRNDLARYNLDEETSSGGSSDDFDQGDNGWKIIHTDVFRFPPYRGLLCAVLGVGAQFLALGT 322
BLAST of Cs6g14930.1 vs. DB:SwissProt
Match: TM9S1_PONAB (Transmembrane 9 superfamily member 1 OS=Pongo abelii OX=9601 GN=TM9SF1 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.297e-13 Identity = 64/264 (24.24%), Postives = 120/264 (45.45%), Query Frame = 1 Query: 211 YFDLPFCPAGDPILNRMKSTEEIVKGDCFTKTQYELRFKVETVDKIICEKNLKTHEVRKFRDAISKEVDYHMYYNNILLRGVVGIVKEKSLTVDSRTRYYLVKHINFYPYYYENKVV-GIYALPDIK--SAVDITEDAEISVNFTYSVNWKVKS--NPTNSVHQNETAIMRDSEDKESLIFWGAMFCIWLMLLIVAI--DPYLQNYFDRYPPRVITLTENGIRYKVHGDECWR---------PPYSSLLGAILAIGAQQLLMYT 954 Y+ LP C + I ++ S E++ GD ++ YE+RF+ +I+C L + +V + R AI + + +++ +RG VG ++E S + L H++F+ + ++++ ++ D+K S + D + + YSV W S ++ H ++ + + L +M ++L++ VA+ L+N RY T + GD W+ PPY LL A+L +GAQ L + T Sbjct: 61 YYQLPVC-CPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFLPHSH-KIGLWTHLDFHLEFRGDRIIFANVSVRDVKPHSLDGLRPDEFLGLTHAYSVRWSETSVERRSDRRHGDDGGFFPRTLEIHWLSIINSMVLVFLLVGFVAVILMRVLRNDLARYNLDEETTSAGSGDDFDQGDNGWKIIHTDVFRFPPYRGLLCAVLGVGAQFLALGT 322
BLAST of Cs6g14930.1 vs. DB:SwissProt
Match: TM9S1_RAT (Transmembrane 9 superfamily member 1 OS=Rattus norvegicus OX=10116 GN=Tm9sf1 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.132e-12 Identity = 63/264 (23.86%), Postives = 121/264 (45.83%), Query Frame = 1 Query: 211 YFDLPFCPAGDPILNRMKSTEEIVKGDCFTKTQYELRFKVETVDKIICEKNLKTHEVRKFRDAISKEVDYHMYYNNILLRGVVGIVKEKSLTVDSRTRYYLVKHINFYPYYYENKVV-GIYALPDIK--SAVDITEDAEISVNFTYSVNWKVKS--NPTNSVHQNETAIMRDSEDKESLIFWGAMFCIWLMLLIVAI--DPYLQNYFDRYPPRVITLTENGIRYKVHGDECWR---------PPYSSLLGAILAIGAQQLLMYT 954 Y+ LP C + I ++ S E++ GD ++ YE+RF+ +I+C L + +V + R AI + + +++ +RG VG ++E S + L H++F+ ++ ++++ ++ D+K S + D + + TYSV W S + ++ ++ + + L +M ++L++ VA+ L+N RY T + GD W+ PP LL A+L +GAQ L + T Sbjct: 61 YYQLPVC-CPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFLPHSH-KIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSLDGLRSDELLGLTHTYSVRWSETSVEHRSDRRRADDGGFFPRTLEIHWLSIINSMVLVFLLVGFVAVILMRVLRNDLARYNLDEETSSGGSSDDFDQGDNGWKIIHTDVFRFPPCRGLLCAVLGVGAQFLALGT 322
BLAST of Cs6g14930.1 vs. DB:SwissProt
Match: TM9S1_HUMAN (Transmembrane 9 superfamily member 1 OS=Homo sapiens OX=9606 GN=TM9SF1 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 3.141e-12 Identity = 67/266 (25.19%), Postives = 119/266 (44.74%), Query Frame = 1 Query: 211 YFDLPFCPAGDPILNRMKSTEEIVKGDCFTKTQYELRFKVETVDKIICEKNLKTHEVRKFRDAISKEVDYHMYYNNILLRGVVGIVKEKSLTVDSRTRYYLVKHINFYPYYYENKVV-GIYALPDIK--SAVDITEDAEISVNFTYSVNWKVKSNPTNSVHQNETAIMRDSEDKESLIFW----GAMFCIWLMLLIVAI--DPYLQNYFDRYPPRVITLTENGIRYKVHGDECWR---------PPYSSLLGAILAIGAQQLLMYT 954 Y+ LP C + I ++ S E++ GD ++ YE+RF+ +I+C L + +V + R AI + + +++ +RG VG ++E S + L H++F+ ++ ++++ ++ D+K S + D + + TYSV W S S + E I W +M ++L++ VA+ L+N RY T + GD W+ PPY LL A+L +GAQ L + T Sbjct: 61 YYQLPVC-CPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFLPHSH-KIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSLDGLRPDEFLGLTHTYSVRWSETSVERRSDRRRGDDGGFFPRTLE--IHWLSIINSMVLVFLLVGFVAVILMRVLRNDLARYNLDEETTSAGSGDDFDQGDNGWKIIHTDVFRFPPYRGLLCAVLGVGAQFLALGT 322
BLAST of Cs6g14930.1 vs. DB:SwissProt
Match: TM9S1_BOVIN (Transmembrane 9 superfamily member 1 OS=Bos taurus OX=9913 GN=TM9SF1 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.591e-11 Identity = 67/267 (25.09%), Postives = 122/267 (45.69%), Query Frame = 1 Query: 211 YFDLPFCPAGDPILNRMKSTEEIVKGDCFTKTQYELRFKVETVDKIICEKNLKTHEVRKFRDAISKEVDYHMYYNNILLRGVVGIVKEKSLTVDSRTRYYLVKHINFYPYYYENKVV-GIYALPDIK--SAVDITEDAEISVNFTYSVNWKVKSNPTNSVHQNETAIMRDSEDKESLIFW----GAMFCIWLMLLIVAI--DPYLQNYFDRYPPRVITL----------TENGIRYKVHGDECWRPPYSSLLGAILAIGAQQLLMYT 954 Y+ LP C + I ++ S E++ GD ++ YE+RF+ +++C L + +V + R AI + + +++ +RG VG ++E S + L H++F+ ++ ++++ ++ D+K S + D + + TYSV W S S + E I W +M ++L++ VA+ L+N RY T ++NG + +H D PPY LL A+L +GAQ L + T Sbjct: 61 YYQLPVC-CPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRVLCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFLPHSH-KIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSLDGLRPDEFLGLTHTYSVRWSETSVERRSDRRRGDDGGFFPRTLE--IHWLSIINSMVLVFLLVGFVAVILMRVLRNDLARYNLDEETASAGSGDDFDQSDNGWKI-IHTDVFRFPPYRGLLCAVLGVGAQFLALGT 322 The following BLAST results are available for this feature:
BLAST of Cs6g14930.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cs6g14930.1_Hzau_Valencia_v1.0 ID=Cs6g14930.1_Hzau_Valencia_v1.0; Name=Cs6g14930.1; organism=Citrus sinensis; type=mRNA; length=972bpback to top protein sequence of Cs6g14930.1 >Cs6g14930.1_Hzau_Valencia_v2.0-protein ID=Cs6g14930.1_Hzau_Valencia_v2.0-protein; Name=Cs6g14930.1; organism=Citrus sinensis; type=polypeptide; length=324bpback to top protein sequence of Cs6g14930.1_Hzau_Valencia_v1.0 >Cs6g14930.1_Hzau_Valencia_v1.0 ID=Cs6g14930.1_Hzau_Valencia_v1.0; Name=Cs6g14930.1_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=324bpback to top mRNA from alignment at chr6:16081306..16083382- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2077bp; location=Sequence derived from: chr6:16081306..16083382- (Citrus sinensisback to top Coding sequence (CDS) from alignment at chr6:16081306..16083382- >Cs6g14930.1_Hzau_Valencia_v1.0 ID=Cs6g14930.1_Hzau_Valencia_v1.0; Name=Cs6g14930.1; organism=Citrus sinensis; type=CDS; length=972bp; location=Sequence derived from: chr6:16081306..16083382- (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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