Cs6g15480.2, Cs6g15480.2_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Cs6g15480.2 vs. DB:SwissProt
Match: HSFA3_ARATH (Heat stress transcription factor A-3 OS=Arabidopsis thaliana OX=3702 GN=HSFA3 PE=1 SV=2) HSP 1 Score: 319.701 bits (818), Expect = 1.323e-103 Identity = 158/249 (63.45%), Postives = 190/249 (76.31%), Query Frame = 1 Query: 178 VPQPLECLHGNPIPPFLSKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIGTFIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQ---KKEQGEIGSSRMKRKFVKH--QPHELGKSDSSVEGQIVKYRP-DWGNLTI 906
+P PL+ L GNPIPPFLSKTFDLVDD +LDP+ISWG TG SFVVWDPLEF+R+ILPRNFKHNNFSSFVRQLNTYGFRKIDTD+WEFANEAF RG++HLLKNI RR+SPQS Q S+ + V G+IE+LRKER LM+E+VEL QQ RGTA H++ +NQR+ AAEQRQKQ++SFLAKL QN FL RLK K++ G +G + ++KF+KH QP DS G++VKY DW L +
Sbjct: 41 LPMPLDILQGNPIPPFLSKTFDLVDDPTLDPVISWGLTGASFVVWDPLEFARIILPRNFKHNNFSSFVRQLNTYGFRKIDTDKWEFANEAFLRGKKHLLKNIHRRRSPQSNQTCCSSTSQSQGSPTEVGGEIEKLRKERRALMEEMVELQQQSRGTARHVDTVNQRLKAAEQRQKQLLSFLAKLFQNRGFLERLKNFKGKEKGGALGLEKARKKFIKHHQQPQ-----DSPTGGEVVKYEADDWERLLM 284
BLAST of Cs6g15480.2 vs. DB:SwissProt
Match: HSFA3_ORYSJ (Heat stress transcription factor A-3 OS=Oryza sativa subsp. japonica OX=39947 GN=HSFA3 PE=2 SV=1) HSP 1 Score: 263.848 bits (673), Expect = 7.477e-81 Identity = 171/395 (43.29%), Postives = 227/395 (57.47%), Query Frame = 1 Query: 181 PQPLECLHGNP-IPPFLSKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIGTFIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQKKEQGEIGSSRMKRKFVKHQPHELGKSDSSVEGQIVKYRPDWGNLTIPNVVPESHHVPVERSPDYLLDGMVGIGSGREDMPFQFENVASVDLAVSDELAA--PGGFTKAPEQMGEG--------ASSSGIKDPHF---KEKNVMSPQQEVRS---ECFVSFPQDLMKENIHDISSPGIECIA-TQEDIWNLGFDATAGM 1311
P+PLE L P +PPFLSKT+DLV + LD +ISWG G SFVVWDP F+R +LP +FKHNNFSSFVRQLNTYGFRK+ DRWEFA+E F R +HLLK I RR+S +QQ G + P S E SG+ ++ LR+E+ L+QEV L Q+H T M +NQR+ +AE RQKQMVSFLAKLLQNP FL +LK ++Q EI S+R+KRKF+KH PH G DS G+ NL + P S +P S L + + G ++ EN+ + D++ A G T+ ++G G AS +DP K KNV+SP + S +C SF ++ + + + G A E IW G DA++ +
Sbjct: 53 PRPLEALLQGPQLPPFLSKTYDLVCEPELDGVISWGHAGNSFVVWDPSAFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHADRWEFAHEDFLRHSKHLLKKIVRRRSSPTQQSG--LQPGSSGE-SGLDPELNTLRREKSALLQEVTRLKQEHLQTIEQMSTLNQRLESAEDRQKQMVSFLAKLLQNPTFLRQLKMHRQQKEIDSTRVKRKFLKHVPH--GNIDS---GESSSQHTGESNL---DFSPTSLDLPATHSDILDLQNFL-LEDGDLNLAMLPENIGLDGIEAPDDIGALVQGFDTQEELELGSGVELLEIPPASGPRGQDPTIGRSKGKNVLSPGLDATSSEADCLGSFSDNMGMLSDSMLQTAGKLMDADDDERIW--GVDASSAL 433
BLAST of Cs6g15480.2 vs. DB:SwissProt
Match: HFA2B_ORYSJ (Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica OX=39947 GN=HSFA2B PE=2 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 5.362e-70 Identity = 108/215 (50.23%), Postives = 151/215 (70.23%), Query Frame = 1 Query: 181 PQPLECLHGNPIPPFLSKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSP-QSQQIGTFIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQKKE-----QGEIGSSRMKR 807
P+P+E LH PPFL+KT+D+VDD D +SW +T SFVVWDP F+ ++LPR FKHNNFSSFVRQLNTYGFRK+D DRWEFANE F RG+RHLLKNI+RRK P + +GP+ E G +I++L++++ +LM EVV+L Q+ + T ++++A+ R+ EQRQ+QM++FLA++++NP FL +L + E Q I R +R
Sbjct: 39 PRPMEGLHDAGPPPFLTKTYDMVDDAGTDAAVSWSATSNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANENFLRGQRHLLKNIKRRKPPSHTASNQQSLGPYLEVGHFGYDAEIDRLKRDKQLLMAEVVKLRQEQQNTKANLKAMEDRLQGTEQRQQQMMAFLARVMKNPEFLKQLMSQNEMRKELQDAISKKRRRR 253
BLAST of Cs6g15480.2 vs. DB:SwissProt
Match: HFA2E_ORYSJ (Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica OX=39947 GN=HSFA2E PE=2 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 1.747e-68 Identity = 103/215 (47.91%), Postives = 153/215 (71.16%), Query Frame = 1 Query: 181 PQPLECLHGNPIPPFLSKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIGTFIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARL----KQKKEQGEIGSSRMKRKF 813
P+P++ L PPFL+KT+D+VDD + D ++SW +T SFVVWDP F ++LPR FKHNNFSSFVRQLNTYGFRK+D D+WEFANE F RG++HLLK+I+RRK P S +G F E G +G+I+QL++++ +LM EVV+L Q+ + T S ++A+ Q++ EQ+Q+ M++FL++++ NP F+ +L + +KE E S + +R+
Sbjct: 25 PRPMDGLADGGPPPFLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQKHLLKSIKRRKPPNSSPSQQSLGSFLEVGHFGYEGEIDQLKRDKHLLMAEVVKLRQEQQNTKSDLQAMEQKLQGTEQKQQHMMAFLSRVMHNPEFIRQLFSQSEMRKELEEFVSKKRRRRI 239
BLAST of Cs6g15480.2 vs. DB:SwissProt
Match: HFA1D_ARATH (Heat stress transcription factor A-1d OS=Arabidopsis thaliana OX=3702 GN=HSFA1D PE=1 SV=2) HSP 1 Score: 227.254 bits (578), Expect = 4.969e-67 Identity = 118/262 (45.04%), Postives = 169/262 (64.50%), Query Frame = 1 Query: 151 SFATTPAADVPQPLECLHGNPIPPFLSKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIG-----------TFIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARL-----KQKKEQGEIGSSRMKRKFVKHQPHELGKSDSSV-EGQIVKYRP 885
S T P+ PQP L N PPFLSKT+D+VDD + D I+SW + SF+VW P EF+R +LP+NFKHNNFSSFVRQLNTYGFRK+D DRWEFANE F RG++HLL++I RRK Q G + + E K G++ ++E+L++++ +LMQE+V L QQ + T + ++ + QR+ E RQ+Q++SFLAK +Q+P FL++ +Q + I + KR+F + + +DS+ +GQIVKY+P
Sbjct: 15 SMETKPSPQ-PQPAAILSSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMENRQQQLMSFLAKAVQSPHFLSQFLQQQNQQNESNRRISDTSKKRRFKRD--GIVRNNDSATPDGQIVKYQP 273
BLAST of Cs6g15480.2 vs. DB:SwissProt
Match: HFA1A_ARATH (Heat stress transcription factor A-1a OS=Arabidopsis thaliana OX=3702 GN=HSFA1A PE=1 SV=2) HSP 1 Score: 226.098 bits (575), Expect = 1.420e-66 Identity = 120/271 (44.28%), Postives = 163/271 (60.15%), Query Frame = 1 Query: 157 ATTPAADVPQPLECLHGNPIPP-FLSKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQ----------------QIGTFIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQKKEQG--EIGSSRMKRKF---------VKHQPHELGKSDSSVEGQIVKYRP 885
T P P P L+ N +PP FLSKT+D+V+D + D I+SW T SF+VWDP EFSR +LP+ FKHNNFSSFVRQLNTYGFRK+D DRWEFANE F RG++HLLK I RRKS Q + E K G++ ++EQL++++ +LMQE+V+L QQ + T + ++ + + + EQRQ+Q++SFLAK +QNP FL++ QK+ + + KR+ H L SD GQIVKY+P
Sbjct: 30 VTAPPPRNPHPATLLNANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLVKHLQVMEQRQQQIMSFLAKAVQNPTFLSQFIQKQTDSNMHVTEANKKRRLREDSTAATESNSHSHSLEASD----GQIVKYQP 296
BLAST of Cs6g15480.2 vs. DB:SwissProt
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica OX=39947 GN=HSFA1 PE=2 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 1.971e-65 Identity = 114/232 (49.14%), Postives = 156/232 (67.24%), Query Frame = 1 Query: 217 PPFLSKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRK----SPQSQQIGTFIGPFS---EAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQKKEQG--EIGSSRMKRKFVKHQPHELGKSDSSVEGQIVKYRP 885
PPFL KT+++VDD + D ++SWG SFVVW+ EF+R +LP+ FKH+NFSSFVRQLNTYGFRK+D DRWEFANE F RG++HLLK I RRK + Q QQ P E K G++ +IE L++++ +LMQE+V L QQ + T ++ + +R+ EQRQ+QM+SFLAK + +P FLA+ Q+ E I +S KR+ K Q L +S++GQIVKY+P
Sbjct: 36 PPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPGFLAQFVQQNENSRRRIVASNKKRRLPK-QDGSLDSESASLDGQIVKYQP 266
BLAST of Cs6g15480.2 vs. DB:SwissProt
Match: HFA2C_ORYSJ (Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica OX=39947 GN=HSFA2C PE=1 SV=2) HSP 1 Score: 218.394 bits (555), Expect = 3.826e-65 Identity = 110/226 (48.67%), Postives = 159/226 (70.35%), Query Frame = 1 Query: 178 VPQPLECLHGNPIPPFLSKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSP------QSQQIGTFIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAF---LARLKQKKEQGEIGSSRMKRKFVKHQP 828
P+P+E LH PPFL+KT+DLV+D + D ++SW G SFVVWDP F+ L+LPR FKHNNFSSFVRQLNTYGFRK+D DRWEFANE F RG+RHLLK I+RRK P Q Q + + + E + G + +I++L++++ +L+ EVV+L Q+ + T H++A+ R+ AAEQ+Q QM+ FLA+ ++NP F LA+ K+K+++ E S+ +R+ + + P
Sbjct: 28 APRPMEGLHEVGPPPFLTKTYDLVEDPATDGVVSWSRAGNSFVVWDPHVFADLLLPRLFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKTIKRRKPPSNAPPSQQQSLTSCL----EVGEFGFEEEIDRLKRDKNILITEVVKLRQEQQATKDHVKAMEDRLRAAEQKQVQMMGFLARAMRNPEFFQQLAQQKEKRKELEDAISKKRRRPIDNVP 249
BLAST of Cs6g15480.2 vs. DB:SwissProt
Match: HFA6B_ARATH (Heat stress transcription factor A-6b OS=Arabidopsis thaliana OX=3702 GN=HSFA6b PE=2 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 3.027e-64 Identity = 111/246 (45.12%), Postives = 161/246 (65.45%), Query Frame = 1 Query: 181 PQPLECLHGNPIPPFLSKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQ--------IGTFIGPFS-EAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARL-KQKKEQGEIGSSRMKRKFVKHQPHELGKSDSSVEGQIVKYRPD 888
PQPLE LH + PPFL+KT+DLV+D+ + ++SW + SF+VWDP FS +LPR FKHNNFSSFVRQLNTYGFRK++ DRWEFANE F RG++HLLKNIRRRK+ + + F E + G+ G+++ LR+++ +LM E+V L QQ + T ++ I +++ E +QKQM+SFLA+ +QNP F+ +L +QK+++ EI + K+ + +P + GK + G Y D
Sbjct: 48 PQPLEGLHESGPPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSEQQSLDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTESKQKQMMSFLARAMQNPDFIQQLVEQKEKRKEIEEAISKK---RQRPIDQGKRNVEDYGDESGYGND 290
BLAST of Cs6g15480.2 vs. DB:SwissProt
Match: HFA1B_ARATH (Heat stress transcription factor A-1b OS=Arabidopsis thaliana OX=3702 GN=HSFA1B PE=2 SV=2) HSP 1 Score: 218.779 bits (556), Expect = 6.417e-64 Identity = 115/254 (45.28%), Postives = 168/254 (66.14%), Query Frame = 1 Query: 157 ATTPAADVPQPLECLHGNPIPPFLSKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRK-------SPQSQQIGTFIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQKKEQG---EI-GSSRMKRKFVKHQPHELGKSDSSVEGQIVKYRP 885
+ TP+ +P P+ N +PPFLSKT+D+VDD + ++SW S SFVVW EFS+++LP+ FKHNNFSSFVRQLNTYGFRK+D DRWEFANE F RGR+ LLK+I RRK Q+Q + +G E K G++ ++E+L++++ +LMQE+V L QQ + T + ++ + Q++ EQRQ+QM+SFLAK +Q+P FL +L Q+ +I GS++ +R V Q + + + QIV+Y+P
Sbjct: 13 SNTPS--IPPPV-----NSVPPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEVGKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAKAVQSPGFLNQLVQQNNNDGNRQIPGSNKKRRLPVDEQENRGDNVANGLNRQIVRYQP 259 The following BLAST results are available for this feature:
BLAST of Cs6g15480.2 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cs6g15480.2_Hzau_Valencia_v1.0 ID=Cs6g15480.2_Hzau_Valencia_v1.0; Name=Cs6g15480.2; organism=Citrus sinensis; type=mRNA; length=3631bpback to top protein sequence of Cs6g15480.2 >Cs6g15480.2_Hzau_Valencia_v2.0-protein ID=Cs6g15480.2_Hzau_Valencia_v2.0-protein; Name=Cs6g15480.2; organism=Citrus sinensis; type=polypeptide; length=510bpback to top protein sequence of Cs6g15480.2_Hzau_Valencia_v1.0 >Cs6g15480.2_Hzau_Valencia_v1.0 ID=Cs6g15480.2_Hzau_Valencia_v1.0; Name=Cs6g15480.2_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=510bpback to top mRNA from alignment at chr6:16555242..16559687- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=4446bp; location=Sequence derived from: chr6:16555242..16559687- (Citrus sinensisback to top Coding sequence (CDS) from alignment at chr6:16555242..16559687- >Cs6g15480.2_Hzau_Valencia_v1.0 ID=Cs6g15480.2_Hzau_Valencia_v1.0; Name=Cs6g15480.2; organism=Citrus sinensis; type=CDS; length=1530bp; location=Sequence derived from: chr6:16555242..16559687- (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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