Cs6g16900.2, Cs6g16900.2_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis

Transcript Overview


Name	Cs6g16900.2
Unique Name	Cs6g16900.2_Hzau_Valencia_v1.0
Type	mRNA
Organism	Citrus sinensis (Sweet orange)
Sequence length	1920

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus sinensis Valencia genome v1.0 (HZAU)	2013-01-22
C. sinensis v2.0, HZAU CDS	2018-06-07
C. sinensis v2.0 peptides	2018-06-21

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cscsiL088	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
cccsiL182	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cmcsiL380	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
csifhR525	Fortunella hindsii genome v1.0	Fortunella hindsii
csiptR387	Poncirus trifoliata genome v1.3.1 (JGI)	Poncirus trifoliata
clpcsiL397	Citrus limon L. Burm f. genome v1.0 - Primary	Citrus limon
clacsiL383	Citrus limon L. Burm f. genome v1.0 - Alternative	Citrus limon
csidvaR333	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
csidvbR352	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
csiswoR359	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
csiswR406	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Cs6g16900	Cs6g16900_Hzau_Valencia_v1.0	Citrus sinensis	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g16900.2	Cs6g16900.2_Hzau_Valencia_v2.0-protein	Citrus sinensis	polypeptide
Cs6g16900.2_Hzau_Valencia_v1.0	Cs6g16900.2_Hzau_Valencia_v1.0	Citrus sinensis	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g16900.2.utr5.1	Cs6g16900.2.utr5.1_Hzau_Valencia_v1.0	Citrus sinensis	five_prime_UTR
Cs6g16900.2.utr5.2	Cs6g16900.2.utr5.2_Hzau_Valencia_v1.0	Citrus sinensis	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g16900.2.exon.1	Cs6g16900.2.exon.1_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g16900.2.exon.2	Cs6g16900.2.exon.2_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g16900.2.exon.3	Cs6g16900.2.exon.3_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g16900.2.exon.4	Cs6g16900.2.exon.4_Hzau_Valencia_v1.0	Citrus sinensis	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g16900.2.cds.1	Cs6g16900.2.cds.1_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g16900.2.cds.2	Cs6g16900.2.cds.2_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g16900.2.cds.3	Cs6g16900.2.cds.3_Hzau_Valencia_v1.0	Citrus sinensis	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g16900.2.utr3.1	Cs6g16900.2.utr3.1_Hzau_Valencia_v1.0	Citrus sinensis	three_prime_UTR

Homology

[Close]

BLAST of Cs6g16900.2 vs. DB:SwissProt
Match: TBB5_MAIZE (Tubulin beta-5 chain OS=Zea mays OX=4577 GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 873.233 bits (2255), Expect = 0.000e+0
Identity = 427/430 (99.30%), Postives = 430/430 (100.00%), Query Frame = 1

Query:    1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 1290
            MREILH+QGGQCGNQIGSKFWEVVCDEHGIDPTGRY+GTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Cs6g16900.2 vs. DB:SwissProt
Match: TBB1_ORYSJ (Tubulin beta-1 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB1 PE=2 SV=2)

HSP 1 Score: 872.078 bits (2252), Expect = 0.000e+0
Identity = 427/430 (99.30%), Postives = 430/430 (100.00%), Query Frame = 1

Query:    1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 1290
            MREILH+QGGQCGNQIGSKFWEVVCDEHGIDPTGRY+GTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Cs6g16900.2 vs. DB:SwissProt
Match: TBB4_ELEIN (Tubulin beta-4 chain OS=Eleusine indica OX=29674 GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 871.692 bits (2251), Expect = 0.000e+0
Identity = 427/430 (99.30%), Postives = 430/430 (100.00%), Query Frame = 1

Query:    1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 1290
            MREILH+QGGQCGNQIGSKFWEVVCDEHGIDPTGRY+GTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Cs6g16900.2 vs. DB:SwissProt
Match: TBB2_ELEIN (Tubulin beta-2 chain OS=Eleusine indica OX=29674 GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 869.766 bits (2246), Expect = 0.000e+0
Identity = 426/430 (99.07%), Postives = 429/430 (99.77%), Query Frame = 1

Query:    1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 1290
            MREILH+QGGQCGNQIG+KFWEVVCDEHGIDPTGRY GTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Cs6g16900.2 vs. DB:SwissProt
Match: TBB6_MAIZE (Tubulin beta-6 chain OS=Zea mays OX=4577 GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 868.226 bits (2242), Expect = 0.000e+0
Identity = 425/430 (98.84%), Postives = 428/430 (99.53%), Query Frame = 1

Query:    1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 1290
            MREILH+QGGQCGNQIG+KFWEVVCDEHGIDPTGRY G SDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Cs6g16900.2 vs. DB:SwissProt
Match: TBB4_ORYSJ (Tubulin beta-4 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 867.07 bits (2239), Expect = 0.000e+0
Identity = 425/430 (98.84%), Postives = 428/430 (99.53%), Query Frame = 1

Query:    1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 1290
            MREILH+QGGQCGNQIG+KFWEVVCDEHGIDPTGRY G SDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Cs6g16900.2 vs. DB:SwissProt
Match: TBB8_MAIZE (Tubulin beta-8 chain OS=Zea mays OX=4577 GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 866.685 bits (2238), Expect = 0.000e+0
Identity = 425/429 (99.07%), Postives = 428/429 (99.77%), Query Frame = 1

Query:    1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 1287
            MREILH+QGGQCGNQIGSKFWEVVCDEHGIDPTGRY+GTSDLQLERVNVYYNEASCGRFVP AVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPGAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429

[Close]

BLAST of Cs6g16900.2 vs. DB:SwissProt
Match: TBB_HORVU (Tubulin beta chain OS=Hordeum vulgare OX=4513 GN=TUBB PE=2 SV=1)

HSP 1 Score: 866.3 bits (2237), Expect = 0.000e+0
Identity = 424/430 (98.60%), Postives = 428/430 (99.53%), Query Frame = 1

Query:    1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 1290
            MREILH+QGGQCGNQIG+KFWEVVCDEHGIDPTGRY GTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GLSMASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Cs6g16900.2 vs. DB:SwissProt
Match: TBB1_WHEAT (Tubulin beta-1 chain OS=Triticum aestivum OX=4565 GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 865.914 bits (2236), Expect = 0.000e+0
Identity = 424/430 (98.60%), Postives = 428/430 (99.53%), Query Frame = 1

Query:    1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 1290
            MREILH+QGGQCGNQIGSKFWEVVCDEHGIDPTGRY+GTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ YR LTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQMYRPLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Cs6g16900.2 vs. DB:SwissProt
Match: TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 865.529 bits (2235), Expect = 0.000e+0
Identity = 423/430 (98.37%), Postives = 428/430 (99.53%), Query Frame = 1

Query:    1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 1290
            MREILH+QGGQCGNQIGSKFWEVVCDEHGIDPTGRY+G SDLQLERVNVYYNEASCGR+VPRA+LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDI PRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

The following BLAST results are available for this feature:

BLAST of Cs6g16900.2 vs. DB:SwissProt

BLAST of Cs6g16900.2 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
TBB5_MAIZE	0.000e+0	99.30	Tubulin beta-5 chain OS=Zea mays OX=4577 GN=TUBB5 ...	[more]
TBB1_ORYSJ	0.000e+0	99.30	Tubulin beta-1 chain OS=Oryza sativa subsp. japoni...	[more]
TBB4_ELEIN	0.000e+0	99.30	Tubulin beta-4 chain OS=Eleusine indica OX=29674 G...	[more]
TBB2_ELEIN	0.000e+0	99.07	Tubulin beta-2 chain OS=Eleusine indica OX=29674 G...	[more]
TBB6_MAIZE	0.000e+0	98.84	Tubulin beta-6 chain OS=Zea mays OX=4577 GN=TUBB6 ...	[more]
TBB4_ORYSJ	0.000e+0	98.84	Tubulin beta-4 chain OS=Oryza sativa subsp. japoni...	[more]
TBB8_MAIZE	0.000e+0	99.07	Tubulin beta-8 chain OS=Zea mays OX=4577 GN=TUBB8 ...	[more]
TBB_HORVU	0.000e+0	98.60	Tubulin beta chain OS=Hordeum vulgare OX=4513 GN=T...	[more]
TBB1_WHEAT	0.000e+0	98.60	Tubulin beta-1 chain OS=Triticum aestivum OX=4565 ...	[more]
TBB6_ARATH	0.000e+0	98.37	Tubulin beta-6 chain OS=Arabidopsis thaliana OX=37...	[more]

InterPro

Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 408..428
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 425..448
None	No IPR available	PANTHER	PTHR11588:SF106	TUBULIN BETA-6 CHAIN	coord: 1..443
None	No IPR available	CDD	cd02187	beta_tubulin	coord: 2..426 e-value: 0.0 score: 878.437
IPR002453	Beta tubulin	PRINTS	PR01163	BETATUBULIN	coord: 245..258 score: 88.61 coord: 311..329 score: 80.51 coord: 88..99 score: 94.76 coord: 347..370 score: 77.79 coord: 212..224 score: 80.48 coord: 41..58 score: 75.84 coord: 377..388 score: 79.05 coord: 230..239 score: 82.17 coord: 329..343 score: 87.09 coord: 265..281 score: 86.49 coord: 108..126 score: 84.57 coord: 412..430 score: 93.14 coord: 152..164 score: 91.43
IPR000217	Tubulin	PRINTS	PR01161	TUBULIN	coord: 132..150 score: 79.04 coord: 106..130 score: 68.98 coord: 51..70 score: 64.29 coord: 190..210 score: 67.82 coord: 176..189 score: 79.11 coord: 93..104 score: 76.26 coord: 370..398 score: 65.34 coord: 151..172 score: 59.63 coord: 10..30 score: 71.85
IPR000217	Tubulin	PANTHER	PTHR11588	TUBULIN	coord: 1..443
IPR003008	Tubulin/FtsZ, GTPase domain	SMART	SM00864	Tubulin_4	coord: 47..244 e-value: 2.0E-70 score: 250.0
IPR003008	Tubulin/FtsZ, GTPase domain	PFAM	PF00091	Tubulin	coord: 3..211 e-value: 1.8E-69 score: 233.8
IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	SMART	SM00865	Tubulin_C_4	coord: 246..383 e-value: 5.9E-42 score: 155.4
IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	PFAM	PF03953	Tubulin_C	coord: 261..381 e-value: 5.5E-40 score: 136.4
IPR037103	Tubulin/FtsZ, C-terminal domain superfamily	GENE3D	3.30.1330.20		coord: 264..373 e-value: 4.5E-53 score: 180.1
IPR023123	Tubulin, C-terminal	GENE3D	1.10.287.600		coord: 374..444 e-value: 5.1E-36 score: 124.4
IPR036525	Tubulin/FtsZ, GTPase domain superfamily	GENE3D	3.40.50.1440		coord: 1..263 e-value: 1.1E-128 score: 430.3
IPR036525	Tubulin/FtsZ, GTPase domain superfamily	SUPERFAMILY	52490	Tubulin nucleotide-binding domain-like	coord: 1..243
IPR017975	Tubulin, conserved site	PROSITE	PS00227	TUBULIN	coord: 140..146
IPR013838	Beta tubulin, autoregulation binding site	PROSITE	PS00228	TUBULIN_B_AUTOREG	coord: 1..4
IPR008280	Tubulin/FtsZ, C-terminal	SUPERFAMILY	55307	Tubulin C-terminal domain-like	coord: 244..429

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
protein sequence
mRNA from alignment at chr6:17506009..17509787+
coding sequence from alignment at chr6:17506009..17509787+

mRNA sequence

>Cs6g16900.2_Hzau_Valencia_v1.0 ID=Cs6g16900.2_Hzau_Valencia_v1.0; Name=Cs6g16900.2; organism=Citrus sinensis; type=mRNA; length=1920bp
CTCCACTCTCTGCATATATAGACAAGTTTAGGGTTCAGTCTCTTGCTCAC
AACTCTCATTTGAATTTTATCTCACTCTCATTTTTTCTCTCTCTAGCGAA
AATCTTCAGTAAGTCTCAGGAAAAATGAGGGAGATCCTTCACGTTCAGGG
TGGACAATGTGGTAACCAGATTGGTTCCAAGTTCTGGGAGGTTGTCTGTG
ATGAACATGGCATCGACCCAACCGGAAGATACATTGGCACCTCAGATCTG
CAGTTGGAGCGTGTCAATGTCTACTACAATGAGGCCTCCTGTGGGCGGTT
TGTTCCTCGTGCAGTTCTCATGGATTTGGAGCCTGGCACCATGGACAGTG
TTAGAACTGGTCCATACGGCCAGATTTTCAGGCCTGATAACTTTGTGTTT
GGACAGTCTGGTGCTGGAAACAATTGGGCCAAGGGTCACTACACTGAGGG
TGCTGAGCTTATTGATGCTGTTCTTGATGTTGTGAGAAAAGAGGCTGAGA
ACTGTGACTGTCTTCAAGGTTTCCAAGTCTGCCACTCTTTGGGTGGAGGA
ACTGGTTCTGGAATGGGTACCTTGTTGATCTCAAAAATTAGGGAGGAGTA
TCCTGACAGGATGATGCTCACTTTCTCAGTGTTCCCTTCTCCAAAGGTCT
CCGATACAGTTGTTGAGCCCTACAATGCAACCCTCTCTGTTCACCAGCTT
GTTGAGAATGCAGATGAGTGCATGGTCCTTGATAATGAGGCTTTGTATGA
CATCTGCTTCAGAACTCTTAAATTGACCACACCAAGCTTTGGTGACTTGA
ACCACTTGATTTCTGCAACCATGAGTGGCGTCACTTGCTGCCTCAGGTTT
CCTGGTCAACTGAACTCTGACCTTCGAAAGCTTGCTGTTAACTTGATTCC
TTTCCCTCGCCTGCACTTCTTCATGGTTGGGTTTGCTCCCCTTACCTCCC
GTGGTTCTCAGCAGTACCGTGCCTTGACAGTCCCAGAACTTACCCAACAA
ATGTGGGATGCCAAGAACATGATGTGTGCTGCCGACCCAAGGCATGGTCG
TTACCTCACTGCTTCTGCCATGTTCAGGGGTAAAATGAGCACCAAGGAAG
TTGACGAGCAGATGATCAATGTTCAAAACAAAAACTCTTCCTACTTTGTG
GAGTGGATTCCAAACAATGTGAAGTCCAGTGTTTGTGACATTCCTCCCAG
AGGTCTCTCCATGGCATCCACCTTCATCGGGAACTCAACATCCATCCAAG
AAATGTTCCGAAGAGTGAGTGAGCAATTCACAGCTATGTTTAGGAGAAAG
GCTTTCCTTCACTGGTACACTGGTGAAGGGATGGATGAAATGGAGTTCAC
TGAAGCTGAGAGCAATATGAATGACCTCGTGTCTGAGTACCAGCAGTACC
AGGATGCCACCGCCGATGAGGAAGGCGAGTATGAAGATGAGGAAGAGGGA
GAATTGGAGCATCATATTTGAAGAAGTTGTGTATGATGCATATTTGTCTG
TGTAGCTGGTTTTGTCAACCTTGCTTGGGATTGCAAAAAATGATCTATGA
TGTGTTATAGTTTTTCTTTCTCGAGTTTTTTACATCAAGTAGCAGTAAAG
TGAGTGATGGATGATGGGATCGATGAGGATCGACTATTGAGGATGGAGAA
ATTAAAGGATGGATGCATGTTTTGAAAGTAGTAGTGTGTGCTACCTTTAC
CTTGCTATCTATTCTGGATTTGATCTATTTTTGTATTCTATTATCCTTAG
CCATTGTCTTCTTATGTTCTGTGGTCGATGATGTTATTATGTTACTGTCT
ATTATGCCATAATGTGATATGCTATTTCTTTTCCTTGGTATAATTCTGCT
ATTTGATTTTTTTTTTTTTTCTTTTGCCTTTCGGAACAAATTTAAGCATC
TCATAGGCCCTTGGAAGCCC

protein sequence of Cs6g16900.2

>Cs6g16900.2_Hzau_Valencia_v2.0-protein ID=Cs6g16900.2_Hzau_Valencia_v2.0-protein; Name=Cs6g16900.2; organism=Citrus sinensis; type=polypeptide; length=449bp
MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVY
YNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
WAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTL
LISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM
VLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDL
RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM
CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK
SSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG
EGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEEGELEHHI*

protein sequence of Cs6g16900.2_Hzau_Valencia_v1.0

>Cs6g16900.2_Hzau_Valencia_v1.0 ID=Cs6g16900.2_Hzau_Valencia_v1.0; Name=Cs6g16900.2_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=449bp
MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVY
YNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
WAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTL
LISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM
VLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDL
RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM
CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK
SSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG
EGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEEGELEHHI*

mRNA from alignment at chr6:17506009..17509787+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=3779bp; location=Sequence derived from: chr6:17506009..17509787+ (Citrus sinensis
CTCCACTCTCTGCATATATAGACAAGTTTAGGGTTCAGTCTCTTGCTCAC
AACTCTCATTTGAATTTTATCTCACTCTCATTTTTTCTCTCTCTAGCGAA
AATCTTCAGTAAGTCTCAGGTATCTGCTTTCTCTCTTACTCTTGAGATCT
AAAATTTTCGATCGCATTGTGCATAATTTTTGTTAACTGTTATGTGAATT
CTCTTCGATTTATAGTTTTTAGTAATAATTTGTTTAGATGATTAGATCTG
TAGACTTGGAGTCAATAAATTTTTACTTCATGTATAATTTAGTACGTTTT
CATTGGAATTATGTTTCTACGATATTGATGTTGTGTTCGTTTTATTTGTT
GTGAAGATCCTGGAGCTTTATACTGCTCTACTGTTTTGTTTTTATTCCAT
GTTTCCATTGCCGGATTCTTTTTTTTTTTTATTTTGGTAAAAATTACTAG
ATCTATTATTTATTTTGGTAAAAATTACTAGATCTATTATAATTCATTCT
ATGTGAAACCATGTGTGACTTGAAGTTTGTTTAGTTGATTGAAAATCTTG
ATAGTTTATTGCTTGTTTGAATTATGCAATATTCTTTTGTTGTTATTGAA
ATACTGTGATAGAATTGAGATATTTTCACATTTTTTATGTGTTCTGGAGA
ATCTGCAAATCGATCTGTGCTTTTAGTATGTGAAGTTTAATGCAAATTGT
GTTGCTTATGATGTAATATTAGTAGTTTTAACTGTCATGATGAGTGTTTC
GTGATTTTTAAGCTTTGATATTTGATCAGATTGTGTATATCATTATTCTT
TGAATTGCTATAATTTATGGTATCTTACGGGCATTTCACCTCTCAATTGC
TAATTTACATTTATGTGAAATTTCAGGAAAAATGAGGGAGATCCTTCACG
TTCAGGGTGGACAATGTGGTAACCAGATTGGTTCCAAGTTCTGGGAGGTT
GTCTGTGATGAACATGGCATCGACCCAACCGGAAGATACATTGGCACCTC
AGATCTGCAGTTGGAGCGTGTCAATGTCTACTACAATGAGGCCTCCTGTG
GGCGGTTTGTTCCTCGTGCAGTTCTCATGGATTTGGAGCCTGGCACCATG
GACAGTGTTAGAACTGGTCCATACGGCCAGATTTTCAGGCCTGATAACTT
TGTGTTTGGACAGTCTGGTGCTGGAAACAATTGGGCCAAGGGTCACTACA
CTGAGGGTGCTGAGCTTATTGATGCTGTTCTTGATGTTGTGAGAAAAGAG
GCTGAGAACTGTGACTGTCTTCAAGGTATAATGTTGGATGATTTTTTCAA
ATTTATAAAATAATTGTTTGTTAACATGGGAATATATCAGTGTTAGTACT
GCATTTTGATCATTTCCCAATATTCTTTTCAGGCGTGTGATCAGACTGAC
CTTTTGTTGTAATGCAGGTTTCCAAGTCTGCCACTCTTTGGGTGGAGGAA
CTGGTTCTGGAATGGGTACCTTGTTGATCTCAAAAATTAGGGAGGAGTAT
CCTGACAGGATGATGCTCACTTTCTCAGTGTTCCCTTCTCCAAAGGTCTC
CGATACAGTTGTTGAGCCCTACAATGCAACCCTCTCTGTTCACCAGCTTG
TTGAGAATGCAGATGAGTGCATGGTCCTTGATAATGAGGCTTTGTATGAC
ATCTGCTTCAGAACTCTTAAATTGACCACACCAAGCTGTAAGTATCTGAA
TTCCCTTTTAGTGTATCATTTGTGCATTTAGTTTATGTGCAAAATGTTTT
ATACCCATTTCATCTAATGGTAATCTTTTTCTTCTTGCCATGTTAGTTTT
TATAATTTTAATAGTCTTATCTGTTAATTCAGTGCTTTCTTCTTGTGTGA
TTTATAATATTTCTCCCCATATGTTGACAGAGGAATATTTAGCCCTGAAT
TTGTATGGAATTTATGAATTGTTGATTTATATTGTCCTGAATGAATTCAT
ATAGTAATTTGTTGGTTTGCCAGATTTTTGTGATCTGAGTTGTCTTTATG
GTTCCAGTTTGTTCAGGTTCATCTGGTAGTTTGCATGTCAATTAAGGAGG
GCCCAAATTATTATGCATCATGTTCATTTAGATGAAAAATAAGAGGTGGG
GACCCCATTTTGTGACATGGATGAAGGCAACCAATTCATTGTCTGTACTT
TTTATTTTCTTCATAAATGCATATTCAAACTTTTTCCTTGATATGAAAGT
AGGACATTTGTTTTGGGGACCATGTTTTTCTGGTTGGCTTGATGTATCCC
ATGTTGTTTACTTGCTTTTTGGCTGTCATGCATGAGTTATTAGTCACCAT
AGGGACCACATTGTCTTTAATCATGAGTTACTTAACCTATATTTTGCTGC
TGAAGGGACAATTATAAACCTGAAAATGCCATGGGTGGATATTATTATTG
ATGATGCAAACTTTACAACCCTTTTATCAATGCATCTGGAATTTGGATAG
TTTACACTAATTTTTACATTGATAATGTATTTGTATTGTGTACTGCTTTC
AAAGGGATTTCTGATGGAATTTGCTTAGTTCTGTGTAATTGATTGCACAA
TGAGGCTTGATGAGTAACCTTTTTGCAATTGAGTTTTACAAGGAAAATGG
TTCATTGCTTGAATTGTGAACTTATATTTTGTGACTATTTTATGCAGTTG
GTGACTTGAACCACTTGATTTCTGCAACCATGAGTGGCGTCACTTGCTGC
CTCAGGTTTCCTGGTCAACTGAACTCTGACCTTCGAAAGCTTGCTGTTAA
CTTGATTCCTTTCCCTCGCCTGCACTTCTTCATGGTTGGGTTTGCTCCCC
TTACCTCCCGTGGTTCTCAGCAGTACCGTGCCTTGACAGTCCCAGAACTT
ACCCAACAAATGTGGGATGCCAAGAACATGATGTGTGCTGCCGACCCAAG
GCATGGTCGTTACCTCACTGCTTCTGCCATGTTCAGGGGTAAAATGAGCA
CCAAGGAAGTTGACGAGCAGATGATCAATGTTCAAAACAAAAACTCTTCC
TACTTTGTGGAGTGGATTCCAAACAATGTGAAGTCCAGTGTTTGTGACAT
TCCTCCCAGAGGTCTCTCCATGGCATCCACCTTCATCGGGAACTCAACAT
CCATCCAAGAAATGTTCCGAAGAGTGAGTGAGCAATTCACAGCTATGTTT
AGGAGAAAGGCTTTCCTTCACTGGTACACTGGTGAAGGGATGGATGAAAT
GGAGTTCACTGAAGCTGAGAGCAATATGAATGACCTCGTGTCTGAGTACC
AGCAGTACCAGGATGCCACCGCCGATGAGGAAGGCGAGTATGAAGATGAG
GAAGAGGGAGAATTGGAGCATCATATTTGAAGAAGTTGTGTATGATGCAT
ATTTGTCTGTGTAGCTGGTTTTGTCAACCTTGCTTGGGATTGCAAAAAAT
GATCTATGATGTGTTATAGTTTTTCTTTCTCGAGTTTTTTACATCAAGTA
GCAGTAAAGTGAGTGATGGATGATGGGATCGATGAGGATCGACTATTGAG
GATGGAGAAATTAAAGGATGGATGCATGTTTTGAAAGTAGTAGTGTGTGC
TACCTTTACCTTGCTATCTATTCTGGATTTGATCTATTTTTGTATTCTAT
TATCCTTAGCCATTGTCTTCTTATGTTCTGTGGTCGATGATGTTATTATG
TTACTGTCTATTATGCCATAATGTGATATGCTATTTCTTTTCCTTGGTAT
AATTCTGCTATTTGATTTTTTTTTTTTTTCTTTTGCCTTTCGGAACAAAT
TTAAGCATCTCATAGGCCCTTGGAAGCCC

Coding sequence (CDS) from alignment at chr6:17506009..17509787+

>Cs6g16900.2_Hzau_Valencia_v1.0 ID=Cs6g16900.2_Hzau_Valencia_v1.0; Name=Cs6g16900.2; organism=Citrus sinensis; type=CDS; length=1347bp; location=Sequence derived from: chr6:17506009..17509787+ (Citrus sinensis
ATGAGGGAGATCCTTCACGTTCAGGGTGGACAATGTGGTAACCAGATTGG
TTCCAAGTTCTGGGAGGTTGTCTGTGATGAACATGGCATCGACCCAACCG
GAAGATACATTGGCACCTCAGATCTGCAGTTGGAGCGTGTCAATGTCTAC
TACAATGAGGCCTCCTGTGGGCGGTTTGTTCCTCGTGCAGTTCTCATGGA
TTTGGAGCCTGGCACCATGGACAGTGTTAGAACTGGTCCATACGGCCAGA
TTTTCAGGCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGAAACAAT
TGGGCCAAGGGTCACTACACTGAGGGTGCTGAGCTTATTGATGCTGTTCT
TGATGTTGTGAGAAAAGAGGCTGAGAACTGTGACTGTCTTCAAGGTTTCC
AAGTCTGCCACTCTTTGGGTGGAGGAACTGGTTCTGGAATGGGTACCTTG
TTGATCTCAAAAATTAGGGAGGAGTATCCTGACAGGATGATGCTCACTTT
CTCAGTGTTCCCTTCTCCAAAGGTCTCCGATACAGTTGTTGAGCCCTACA
ATGCAACCCTCTCTGTTCACCAGCTTGTTGAGAATGCAGATGAGTGCATG
GTCCTTGATAATGAGGCTTTGTATGACATCTGCTTCAGAACTCTTAAATT
GACCACACCAAGCTTTGGTGACTTGAACCACTTGATTTCTGCAACCATGA
GTGGCGTCACTTGCTGCCTCAGGTTTCCTGGTCAACTGAACTCTGACCTT
CGAAAGCTTGCTGTTAACTTGATTCCTTTCCCTCGCCTGCACTTCTTCAT
GGTTGGGTTTGCTCCCCTTACCTCCCGTGGTTCTCAGCAGTACCGTGCCT
TGACAGTCCCAGAACTTACCCAACAAATGTGGGATGCCAAGAACATGATG
TGTGCTGCCGACCCAAGGCATGGTCGTTACCTCACTGCTTCTGCCATGTT
CAGGGGTAAAATGAGCACCAAGGAAGTTGACGAGCAGATGATCAATGTTC
AAAACAAAAACTCTTCCTACTTTGTGGAGTGGATTCCAAACAATGTGAAG
TCCAGTGTTTGTGACATTCCTCCCAGAGGTCTCTCCATGGCATCCACCTT
CATCGGGAACTCAACATCCATCCAAGAAATGTTCCGAAGAGTGAGTGAGC
AATTCACAGCTATGTTTAGGAGAAAGGCTTTCCTTCACTGGTACACTGGT
GAAGGGATGGATGAAATGGAGTTCACTGAAGCTGAGAGCAATATGAATGA
CCTCGTGTCTGAGTACCAGCAGTACCAGGATGCCACCGCCGATGAGGAAG
GCGAGTATGAAGATGAGGAAGAGGGAGAATTGGAGCATCATATTTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002453	Beta_tubulin
IPR000217	Tubulin
IPR003008	Tubulin_FtsZ_GTPase
IPR018316	Tubulin/FtsZ_2-layer-sand-dom
IPR037103	Tubulin/FtsZ-like_C
IPR023123	Tubulin_C
IPR036525	Tubulin/FtsZ_GTPase_sf
IPR017975	Tubulin_CS
IPR013838	Beta-tubulin_BS
IPR008280	Tub_FtsZ_C

Vocabulary: **Biological Process**
Term	Definition
GO:0007017	microtubule-based process

Vocabulary: **Molecular Function**
Term	Definition
GO:0005200	structural constituent of cytoskeleton
GO:0005525	GTP binding
GO:0003924	GTPase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005874	microtubule