Cs6g17730.1, Cs6g17730.1_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis

Transcript Overview


Name	Cs6g17730.1
Unique Name	Cs6g17730.1_Hzau_Valencia_v1.0
Type	mRNA
Organism	Citrus sinensis (Sweet orange)
Sequence length	222

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus sinensis Valencia genome v1.0 (HZAU)	2013-01-22
C. sinensis v2.0, HZAU CDS	2018-06-07
C. sinensis v2.0 peptides	2018-06-21

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cmcsiL171	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmcsiL380	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
csifhR525	Fortunella hindsii genome v1.0	Fortunella hindsii
csifhR547	Fortunella hindsii genome v1.0	Fortunella hindsii
clpcsiL151	Citrus limon L. Burm f. genome v1.0 - Primary	Citrus limon
clacsiL157	Citrus limon L. Burm f. genome v1.0 - Alternative	Citrus limon
clpcsiL397	Citrus limon L. Burm f. genome v1.0 - Primary	Citrus limon
clacsiL383	Citrus limon L. Burm f. genome v1.0 - Alternative	Citrus limon
csidvaR326	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
csidvaR333	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
csidvbR352	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
csiswoR346	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
csiswoR359	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
csiswR399	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
csiswR406	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis

Orthologs


Gene/Transcript	Assembly	Species
sjg321840.1	Fortunella hindsii genome v1.0	Fortunella hindsii

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Cs6g_pb009010.1	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
Cs_ont_6g004920.1	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Cs6g17730	Cs6g17730_Hzau_Valencia_v1.0	Citrus sinensis	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g17730.1	Cs6g17730.1_Hzau_Valencia_v2.0-protein	Citrus sinensis	polypeptide
Cs6g17730.1_Hzau_Valencia_v1.0	Cs6g17730.1_Hzau_Valencia_v1.0	Citrus sinensis	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g17730.1.exon.1	Cs6g17730.1.exon.1_Hzau_Valencia_v1.0	Citrus sinensis	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g17730.1.cds.1	Cs6g17730.1.cds.1_Hzau_Valencia_v1.0	Citrus sinensis	CDS

Homology

The following BLAST results are available for this feature:

BLAST of Cs6g17730.1 vs. DB:SwissProt

BLAST of Cs6g17730.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS)
Total hits: 0

Position :

Zoom :

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Match Name	E-value	Identity	Description

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
protein sequence
mRNA from alignment at chr6:18169646..18169867+
coding sequence from alignment at chr6:18169646..18169867+

mRNA sequence

>Cs6g17730.1_Hzau_Valencia_v1.0 ID=Cs6g17730.1_Hzau_Valencia_v1.0; Name=Cs6g17730.1; organism=Citrus sinensis; type=mRNA; length=222bp
ATGGATTGCTTCGCACGGGTCAAGCAGCAACCGATGGATCAAGCGGCAAC
GAGTTTCATCGATGGCTTCACGGGTTTCGTCGGTGGCTACCGGAAAAGCA
GATCCGATCGAAGTGAAGTGAAGCAATTGTCGATGCAGCAGCAAGCAGAT
CCTGTCGTCAATGCAGCAGATCTGGTCGAGTGGTGTGCTGTCGCTGGCTC
GCTGCTGTCAATGCTGTGCTGA

protein sequence of Cs6g17730.1

>Cs6g17730.1_Hzau_Valencia_v2.0-protein ID=Cs6g17730.1_Hzau_Valencia_v2.0-protein; Name=Cs6g17730.1; organism=Citrus sinensis; type=polypeptide; length=74bp
MDCFARVKQQPMDQAATSFIDGFTGFVGGYRKSRSDRSEVKQLSMQQQAD
PVVNAADLVEWCAVAGSLLSMLC*

protein sequence of Cs6g17730.1_Hzau_Valencia_v1.0

>Cs6g17730.1_Hzau_Valencia_v1.0 ID=Cs6g17730.1_Hzau_Valencia_v1.0; Name=Cs6g17730.1_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=74bp
MDCFARVKQQPMDQAATSFIDGFTGFVGGYRKSRSDRSEVKQLSMQQQAD
PVVNAADLVEWCAVAGSLLSMLC*

mRNA from alignment at chr6:18169646..18169867+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=222bp; location=Sequence derived from: chr6:18169646..18169867+ (Citrus sinensis
ATGGATTGCTTCGCACGGGTCAAGCAGCAACCGATGGATCAAGCGGCAAC
GAGTTTCATCGATGGCTTCACGGGTTTCGTCGGTGGCTACCGGAAAAGCA
GATCCGATCGAAGTGAAGTGAAGCAATTGTCGATGCAGCAGCAAGCAGAT
CCTGTCGTCAATGCAGCAGATCTGGTCGAGTGGTGTGCTGTCGCTGGCTC
GCTGCTGTCAATGCTGTGCTGA

Coding sequence (CDS) from alignment at chr6:18169646..18169867+

>Cs6g17730.1_Hzau_Valencia_v1.0 ID=Cs6g17730.1_Hzau_Valencia_v1.0; Name=Cs6g17730.1; organism=Citrus sinensis; type=CDS; length=222bp; location=Sequence derived from: chr6:18169646..18169867+ (Citrus sinensis
ATGGATTGCTTCGCACGGGTCAAGCAGCAACCGATGGATCAAGCGGCAAC
GAGTTTCATCGATGGCTTCACGGGTTTCGTCGGTGGCTACCGGAAAAGCA
GATCCGATCGAAGTGAAGTGAAGCAATTGTCGATGCAGCAGCAAGCAGAT
CCTGTCGTCAATGCAGCAGATCTGGTCGAGTGGTGTGCTGTCGCTGGCTC
GCTGCTGTCAATGCTGTGCTGA