Cs6g18350.1, Cs6g18350.1_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Cs6g18350.1 vs. DB:SwissProt
Match: GT121_ARATH (Putative glutamine amidotransferase GAT1_2.1 OS=Arabidopsis thaliana OX=3702 GN=GAT1_2.1 PE=2 SV=1) HSP 1 Score: 261.922 bits (668), Expect = 1.029e-82 Identity = 146/294 (49.66%), Postives = 183/294 (62.24%), Query Frame = 1 Query: 325 SLAKLCLERGITIFGNLQGSQILNVACGGTLYQDVSTELSNKCPNGTHRVSHINYDDYDGHRHMIKVVENTPLQNWFKVSIDKENMEVLVNSYHHQDVKRLAQRFCPMAFAPDGLIEGFYDHEAYNPQEGKFLVGLQFHPERMRLPSSEEFDYPGCPIVYKFKIKLQEFVKAVIAYLKRMNSASYVPNFIPLKQKIGKSKVLVKSFSPAKDKNISGQKAHPSEESELQAVAEFLESDIAAPGFQEYEMSLRLMQMGAAVRNSSSYL-RMKLNPDKMLPSNVLGAMSTGQLSNLM 1203
+LA+LCLER I G +GSQILNVA GGTLYQD+ EL +HI+YD+YDGHRH ++VE TPL F E ME++VNSYHHQ VKRLAQRF PMA+APDGLIEGFYD Y+P+EG+FL+GLQFHPERMRLP S+EFDYPGC +VY QEFVKAVIA+ K+ +A+ V +K+ K+ LVKSFS AEFLE++ QE RL QMGA VRNS Y+ RMK+ ++ + +S +LS+++
Sbjct: 118 TLARLCLERNIPFLGICRGSQILNVAAGGTLYQDIDKELGTTMTT----TNHIDYDNYDGHRHEARIVEETPLHKLF------EEMEIMVNSYHHQGVKRLAQRFVPMAYAPDGLIEGFYDPNRYDPKEGQFLMGLQFHPERMRLPGSDEFDYPGCALVY------QEFVKAVIAFQKKQVNATQV----EMKR---KTTTLVKSFSQ----------------------AEFLEANTVLSKQQEN----RLKQMGATVRNSCVYMKRMKMKEEQ---ERAMDKLSAERLSDML 359
BLAST of Cs6g18350.1 vs. DB:SwissProt
Match: NLTP_VIGUN (Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata OX=3917 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.948e-20 Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 1 Query: 91 PVAEAVTCNPSQLIPCLPAFTSTAPPSTVCCNSLRQQRPCLCTYLRNPLYKQYYDSPNSRRIAVTCGVPFPR 306
PVAEAVTCNP++L C+PA T + PS+ CC+ L+ Q PCLC Y++NP KQY +SP ++++ CGV +P
Sbjct: 27 PVAEAVTCNPTELSSCVPAITGGSKPSSTCCSKLKVQEPCLCNYIKNPSLKQYVNSPGAKKVLSNCGVTYPN 98
BLAST of Cs6g18350.1 vs. DB:SwissProt
Match: NLTP2_PRUAR (Non-specific lipid-transfer protein 2 OS=Prunus armeniaca OX=36596 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 2.426e-19 Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 1 Query: 106 VTCNPSQLIPCLPAFTSTAPPSTVCCNSLRQQRPCLCTYLRNPLYKQYYDSPNSRRIAVTCGVPFPR 306
VTC+P QL PCL S AP T CC LR+QRPCLC YL+NP +QY +SPN+R++A CGVP P+
Sbjct: 1 VTCSPVQLSPCLGPINSGAPSPTTCCQKLREQRPCLCGYLKNPSLRQYVNSPNARKLASNCGVPVPQ 67
BLAST of Cs6g18350.1 vs. DB:SwissProt
Match: NLTP2_APIGA (Non-specific lipid-transfer protein 2 OS=Apium graveolens var. rapaceum OX=278110 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.453e-16 Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 1 Query: 106 VTCNPSQLIPCLPAFTSTAPPSTVCCNSLRQQRPCLCTYLRNPLYKQYYDSPNSRRIAVTCGVPF 300
TC+ QL PCL A T PPS CCN L++Q+PCLC YL++P K Y +SP +R+ A +CGV
Sbjct: 1 ATCSAVQLSPCLAAITKNTPPSAACCNKLKEQKPCLCGYLKDPNLKNYVNSPGARKTASSCGVAL 65
BLAST of Cs6g18350.1 vs. DB:SwissProt
Match: NLTPX_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=LTP-2 PE=3 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 5.149e-13 Identity = 26/65 (40.00%), Postives = 39/65 (60.00%), Query Frame = 1 Query: 109 TCNPSQLIPCLPAFTSTAPPSTVCCNSLRQQRPCLCTYLRNPLYKQYYDSPNSRRIAVTCGVPFP 303
+CN QL C A A P+ CC+SLR Q+ C C + ++P Y +Y +SPN+R+ +CG+ P
Sbjct: 29 SCNAGQLTVCAGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALP 93
BLAST of Cs6g18350.1 vs. DB:SwissProt
Match: NLT2G_WHEAT (Non-specific lipid-transfer protein 2G OS=Triticum aestivum OX=4565 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 5.461e-13 Identity = 34/85 (40.00%), Postives = 45/85 (52.94%), Query Frame = 1 Query: 49 SALLLATVVFSRELPVAEAVTCNPSQLIPCLPAFTSTAPPSTVCCNSLRQQRPCLCTYLRNPLYKQYYDSPNSRRIAVTCGVPFP 303
+AL+LA VV + C SQL C A S A PS CC +LR Q+ C C Y ++P Y QY SP++R +CG+ P
Sbjct: 11 TALMLALVVLAAAP-GGARAACQASQLAVCASAILSGAKPSGECCGNLRAQQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVP 94
BLAST of Cs6g18350.1 vs. DB:SwissProt
Match: NLTPX_ORYSJ (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=LTP-2 PE=1 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 8.915e-12 Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 1 Query: 115 NPSQLIPCLPAFTSTAPPSTVCCNSLRQQRPCLCTYLRNPLYKQYYDSPNSRRIAVTCGVPFP 303
N QL C A A P+ CC+SLR Q+ C C + ++P Y +Y +SPN+R+ +CG+ P
Sbjct: 31 NAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALP 93
BLAST of Cs6g18350.1 vs. DB:SwissProt
Match: NLT2P_WHEAT (Non-specific lipid-transfer protein 2P OS=Triticum aestivum OX=4565 PE=1 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 3.160e-11 Identity = 29/65 (44.62%), Postives = 37/65 (56.92%), Query Frame = 1 Query: 109 TCNPSQLIPCLPAFTSTAPPSTVCCNSLRQQRPCLCTYLRNPLYKQYYDSPNSRRIAVTCGVPFP 303
C SQL C A S A PS CC +LR Q+PC C Y ++P Y QY SP++R +CG+ P
Sbjct: 1 ACQASQLAVCASAILSGAKPSGECCGNLRAQQPCFCQYAKDPTYGQYIRSPHARDTLQSCGLAVP 65
BLAST of Cs6g18350.1 vs. DB:SwissProt
Match: NLTP2_MAIZE (Probable non-specific lipid-transfer protein 2 OS=Zea mays OX=4577 PE=1 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 1.073e-10 Identity = 35/72 (48.61%), Postives = 42/72 (58.33%), Query Frame = 1 Query: 103 AVTCNPSQLIPCL-PA-FTSTAPPSTVCCNSLRQQRPCLCTYLRNPLYKQYYDSPNSRRIAVTCGVPFPRDR 312
A CNP+QL PC PA F PP+ CC LR Q+ CLC Y R+P Y Y SPN+ R+ C +P PR R
Sbjct: 1 ANPCNPAQLTPCAGPALFGGAVPPA--CCAQLRAQQGCLCGYARSPNYGSYIRSPNAARLFAICNLPMPRCR 70
BLAST of Cs6g18350.1 vs. DB:SwissProt
Match: NTPR_ENTHA (Protein NtpR OS=Enterococcus hirae (strain ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO 1258) OX=768486 GN=ntpR PE=4 SV=2) HSP 1 Score: 64.6994 bits (156), Expect = 1.326e-10 Identity = 50/156 (32.05%), Postives = 79/156 (50.64%), Query Frame = 1 Query: 325 SLAKLCLERGITIFGNLQGSQILNVACGGTLYQDVSTELSNKCPNGTHRVSHINYDDYDGHRHMIKVVENTPLQNWFKVSIDKENMEVLVNSYHHQDVKRLAQRFCPMAFAPDGLIEGFYDHEAYNPQEGKFLVGLQFHPERMRLPSSEE---FDY 783
+L L++ IF +G Q+LNV GG+LYQD++T + H + H ++++ +T L +++ D LVNSYHHQ +K LA AF+PDGL+EG E+ + + L G+Q+HPE +S + FD+
Sbjct: 97 ALISEALKQNKPIFAVCRGMQLLNVVLGGSLYQDLTTYPKWSVKHEQHPTAP------QFATHEVEILPDTLL---YQLLPDT----YLVNSYHHQALKELAPSLKATAFSPDGLVEGI---ESLD--KDVRLFGVQWHPELTHSSNSTDQGLFDF 234 The following BLAST results are available for this feature:
BLAST of Cs6g18350.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cs6g18350.1_Hzau_Valencia_v1.0 ID=Cs6g18350.1_Hzau_Valencia_v1.0; Name=Cs6g18350.1; organism=Citrus sinensis; type=mRNA; length=1218bpback to top protein sequence of Cs6g18350.1 >Cs6g18350.1_Hzau_Valencia_v2.0-protein ID=Cs6g18350.1_Hzau_Valencia_v2.0-protein; Name=Cs6g18350.1; organism=Citrus sinensis; type=polypeptide; length=406bpback to top protein sequence of Cs6g18350.1_Hzau_Valencia_v1.0 >Cs6g18350.1_Hzau_Valencia_v1.0 ID=Cs6g18350.1_Hzau_Valencia_v1.0; Name=Cs6g18350.1_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=406bpback to top mRNA from alignment at chr6:18484569..18487332+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2764bp; location=Sequence derived from: chr6:18484569..18487332+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at chr6:18484569..18487332+ >Cs6g18350.1_Hzau_Valencia_v1.0 ID=Cs6g18350.1_Hzau_Valencia_v1.0; Name=Cs6g18350.1; organism=Citrus sinensis; type=CDS; length=1218bp; location=Sequence derived from: chr6:18484569..18487332+ (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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