Cs6g18950.1, Cs6g18950.1_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Cs6g18950.1 vs. DB:SwissProt
Match: CCB12_ORYSJ (Cyclin-B1-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCB1-2 PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 5.211e-24 Identity = 53/115 (46.09%), Postives = 71/115 (61.74%), Query Frame = 1 Query: 1 MAAQNKISHQVGEFQNDVFRFDIH-GVKSDIVGSHPLETLCQSAKQREEEMKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESE 342 MA+ + ++G +DV RF ++ VK D+ HPL+ + + KR YG+AF ++ D D QILS+FQRP GA+PSSMLG EA+TGSL+DFGFE YLN SE Sbjct: 1 MASGGVVKKEIGG-NHDVVRFGVNDSVKGDLAPPHPLQASVHKEAKFWADKKRFGAEAIYGSAFNIRKDLDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLNYAAASE 114
BLAST of Cs6g18950.1 vs. DB:SwissProt
Match: POMP_DICDI (Proteasome maturation protein homolog OS=Dictyostelium discoideum OX=44689 GN=pomp PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.099e-14 Identity = 43/107 (40.19%), Postives = 65/107 (60.75%), Query Frame = 1 Query: 82 SDIVG-SHPLETLCQSAKQREEEMKRRILVNTYGTAFPMKMDFDRQILSRFQR-PTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIGLS 396 S++ G SHP+E++ + E ++K + N +GT M + ++QI S+F+R PT + SSM+GLE + G EDF F YL DP SE+ P LH ME R+G++ Sbjct: 19 SNVKGLSHPVESIQLDQGKTEIKLKNFAMKNVFGTHMVMNNEIEKQIYSQFKRLPT--LQSSMVGLETILGLDEDFDFGDYLCDPATSEAPLPQ-LHTSMEHRLGMT 122
BLAST of Cs6g18950.1 vs. DB:SwissProt
Match: POMP_BOVIN (Proteasome maturation protein OS=Bos taurus OX=9913 GN=POMP PE=2 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.729e-10 Identity = 39/121 (32.23%), Postives = 67/121 (55.37%), Query Frame = 1 Query: 34 GEFQN-DVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEMKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIGL 393 G F++ D+ R VK++++ SHPLE ++ + +++M L N G P+K+ + + + + QR +PSS L L+ + G+ E GFE LNDP +SE + H +E ++GL Sbjct: 23 GPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQVQR-LPFLPSSNLSLDILRGNDETIGFEDILNDPSQSELM--GEPHLMVEYKLGL 140
BLAST of Cs6g18950.1 vs. DB:SwissProt
Match: POMP_PONAB (Proteasome maturation protein OS=Pongo abelii OX=9601 GN=POMP PE=2 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 2.033e-9 Identity = 38/121 (31.40%), Postives = 66/121 (54.55%), Query Frame = 1 Query: 34 GEFQN-DVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEMKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIGL 393 G F++ D+ R VK++++ SHPLE ++ + +++M L N G P+K+ + + + + QR + SS L L+ + G+ E GFE LNDP +SE + H +E ++GL Sbjct: 23 GPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQVQR-LPFLSSSNLSLDVLRGNDETIGFEDILNDPSQSEVM--GEPHLMVEYKLGL 140
BLAST of Cs6g18950.1 vs. DB:SwissProt
Match: POMP_HUMAN (Proteasome maturation protein OS=Homo sapiens OX=9606 GN=POMP PE=1 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 2.033e-9 Identity = 38/121 (31.40%), Postives = 66/121 (54.55%), Query Frame = 1 Query: 34 GEFQN-DVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEMKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIGL 393 G F++ D+ R VK++++ SHPLE ++ + +++M L N G P+K+ + + + + QR + SS L L+ + G+ E GFE LNDP +SE + H +E ++GL Sbjct: 23 GPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQVQR-LPFLSSSNLSLDVLRGNDETIGFEDILNDPSQSEVM--GEPHLMVEYKLGL 140
BLAST of Cs6g18950.1 vs. DB:SwissProt
Match: POMP_MOUSE (Proteasome maturation protein OS=Mus musculus OX=10090 GN=Pomp PE=1 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 3.474e-9 Identity = 38/121 (31.40%), Postives = 66/121 (54.55%), Query Frame = 1 Query: 34 GEFQN-DVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEMKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIGL 393 G F++ D+ R VK++++ SHPLE ++ + +++M L N G P+K+ + + + + R +PSS L L+ + G+ E GFE LNDP +SE + H +E ++GL Sbjct: 23 GPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQVHR-LPFLPSSNLSLDILRGNDETIGFEDILNDPSQSELM--GEPHVMVEHKLGL 140 The following BLAST results are available for this feature:
BLAST of Cs6g18950.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS) Total hits: 6 Position : 0 Zoom : x 1
InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cs6g18950.1_Hzau_Valencia_v1.0 ID=Cs6g18950.1_Hzau_Valencia_v1.0; Name=Cs6g18950.1; organism=Citrus sinensis; type=mRNA; length=426bpback to top protein sequence of Cs6g18950.1 >Cs6g18950.1_Hzau_Valencia_v2.0-protein ID=Cs6g18950.1_Hzau_Valencia_v2.0-protein; Name=Cs6g18950.1; organism=Citrus sinensis; type=polypeptide; length=142bpback to top protein sequence of Cs6g18950.1_Hzau_Valencia_v1.0 >Cs6g18950.1_Hzau_Valencia_v1.0 ID=Cs6g18950.1_Hzau_Valencia_v1.0; Name=Cs6g18950.1_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=142bpback to top mRNA from alignment at chr6:18961790..18964453+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2664bp; location=Sequence derived from: chr6:18961790..18964453+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at chr6:18961790..18964453+ >Cs6g18950.1_Hzau_Valencia_v1.0 ID=Cs6g18950.1_Hzau_Valencia_v1.0; Name=Cs6g18950.1; organism=Citrus sinensis; type=CDS; length=426bp; location=Sequence derived from: chr6:18961790..18964453+ (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|