Transcript Overview
Name | Cs6g19460.4 |
Unique Name | Cs6g19460.4_Hzau_Valencia_v1.0 |
Type | mRNA |
Organism | Citrus sinensis (Sweet orange) |
Sequence length | 2205 |
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Cs6g19460.4 | Cs6g19460.4_Hzau_Valencia_v2.0-protein | Citrus sinensis | polypeptide |
Cs6g19460.4_Hzau_Valencia_v1.0 | Cs6g19460.4_Hzau_Valencia_v1.0 | Citrus sinensis | polypeptide |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Cs6g19460.4.utr3.1 | Cs6g19460.4.utr3.1_Hzau_Valencia_v1.0 | Citrus sinensis | three_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Cs6g19460.4.cds.4 | Cs6g19460.4.cds.4_Hzau_Valencia_v1.0 | Citrus sinensis | CDS |
Cs6g19460.4.cds.3 | Cs6g19460.4.cds.3_Hzau_Valencia_v1.0 | Citrus sinensis | CDS |
Cs6g19460.4.cds.2 | Cs6g19460.4.cds.2_Hzau_Valencia_v1.0 | Citrus sinensis | CDS |
Cs6g19460.4.cds.1 | Cs6g19460.4.cds.1_Hzau_Valencia_v1.0 | Citrus sinensis | CDS |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Cs6g19460.4.exon.5 | Cs6g19460.4.exon.5_Hzau_Valencia_v1.0 | Citrus sinensis | exon |
Cs6g19460.4.exon.4 | Cs6g19460.4.exon.4_Hzau_Valencia_v1.0 | Citrus sinensis | exon |
Cs6g19460.4.exon.3 | Cs6g19460.4.exon.3_Hzau_Valencia_v1.0 | Citrus sinensis | exon |
Cs6g19460.4.exon.2 | Cs6g19460.4.exon.2_Hzau_Valencia_v1.0 | Citrus sinensis | exon |
Cs6g19460.4.exon.1 | Cs6g19460.4.exon.1_Hzau_Valencia_v1.0 | Citrus sinensis | exon |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Cs6g19460.4.utr5.2 | Cs6g19460.4.utr5.2_Hzau_Valencia_v1.0 | Citrus sinensis | five_prime_UTR |
Cs6g19460.4.utr5.1 | Cs6g19460.4.utr5.1_Hzau_Valencia_v1.0 | Citrus sinensis | five_prime_UTR |
Homology
BLAST of Cs6g19460.4 vs. DB:SwissProt
Match: Y4919_ARATH (Uncharacterized zinc finger CCHC domain-containing protein At4g19190 OS=Arabidopsis thaliana OX=3702 GN=At4g19190 PE=2 SV=1) HSP 1 Score: 268.085 bits (684), Expect = 3.130e-83 Identity = 123/146 (84.25%), Postives = 133/146 (91.10%), Query Frame = 1 Query: 46 AEEKKKSRPKDVFGRPLPTEEEFEILKNAPRLETGAPARVKPFGVEVRNVKCLRCGNFGHQSGDRECPLKDAIMPNEESRLKRDDPLTAIMAHVDPSEPLKWELKRQPGNFSPPRGGFKPDDPNQQIVAEDIFDEYGGFLAGDSVP 483
+E+KK RPKDVFGR LPTEEEFE+LKNAPR+ETG P RVKPF VEVRNVKCLRCGNFGHQSGDR+CPLKDA+MPNEE RLKRDDPLTAI+AH DPSEPLKWELK++PG SPPRGGF PDDPNQQIVAEDIFDEYGGFL G S+P
Sbjct: 162 TQERKKPRPKDVFGRALPTEEEFEVLKNAPRMETGIPGRVKPFAVEVRNVKCLRCGNFGHQSGDRDCPLKDAVMPNEELRLKRDDPLTAIIAHTDPSEPLKWELKQKPG-LSPPRGGFDPDDPNQQIVAEDIFDEYGGFLEG-SIP 305
BLAST of Cs6g19460.4 vs. DB:SwissProt
Match: CIR1_CHICK (Corepressor interacting with RBPJ 1 OS=Gallus gallus OX=9031 GN=CIR1 PE=2 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 2.909e-7 Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1 Query: 100 TEEEFEILKNAPRLETG---APARVKPFGVEVRNVKCLRCGNFGHQSGDRECPL 252
TE +FE K APR + R +PFG++VRNV+C++C +GH + DRECPL
Sbjct: 90 TEYKFEWQKVAPREKYAKDDMNIRDQPFGIQVRNVRCIKCHKWGHVNTDRECPL 143
The following BLAST results are available for this feature:
BLAST of Cs6g19460.4 vs. DB:SwissProt
Analysis Date: 2018-06-07 ( C. sinensis v2.0, HZAU CDS)
Total hits: 2
Match Name | E-value | Identity | Description | |
Y4919_ARATH | 3.130e-83 | 84.25 | Uncharacterized zinc finger CCHC domain-containing... | [more] |
CIR1_CHICK | 2.909e-7 | 48.15 | Corepressor interacting with RBPJ 1 OS=Gallus gall... | [more] |
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InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | PFAM | PF15288 | zf-CCHC_6 | coord: 65..86 e-value: 5.5E-6 score: 26.0 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 118..142 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 159..381 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 12..33 |
None | No IPR available | PANTHER | PTHR13151 | CBF1 INTERACTING COREPRESSOR CIR | coord: 16..374 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cs6g19460.4_Hzau_Valencia_v1.0 ID=Cs6g19460.4_Hzau_Valencia_v1.0; Name=Cs6g19460.4; organism=Citrus sinensis; type=mRNA; length=2205bp AAATTAATGGCTAGTTGGTCAGCAACGTCGTTTCATCTATCGCTCATCGT TTGTCATCATCGGAATGGAGGACGAGGAAGGAGGAGGGAAGAGATTGAAG AAAGCATCAGTTGTAGGATCGGGTGAAGTTGATTACAAGACGAAAGCAGG AACCGCATGGAGCCATTCATACTTAAACCAGAAGCCATGGCATCCTCTCT CTTACCCTAATCAACGCCGCAAATGGATCGCCGAACAGATGCACTCCCAG CGCCAGCGCCGCACCGAGGAAGTGACCCGCGAATATGCACAAGAGCAGGA GTTCTTTCGCCAAACATCTCTTATTTCCAAGAAAGACAAGGAAAAGGTAC AGTTTTTACTACTTATAAGCGTTTGATTTAAAACCCCAGATGGATTTTTT TTTTCTTTTTTGTTATAGTATAGTTACTTGTTTATTCTGTTGATTTGGCG TAGATGGAGACTATGCAAGCTGTTAGCTTTATGTATGTTCGTCCACCCGG TTACAATGCTGAAAGCGCTAAGGCTGCGGAACTTGAAGAAGGGAGGAAGA AACAAGGAGACTCATCTCAAGAACCAGCTTCAAATCCAATGTATTCTGTT ATTATTCTTATTATTGTCATTAATCATTGCCACTAGAAAGCATTTGTATA ATTGTTTCATTTTGTGGTAATGTCAGATGTTGTTTTGTATTTATTGTAGG CAACCAGAGTCGAAGCCTGTGGCTGAAGAAAAGAAGAAATCAAGGCCAAA AGATGTGTTTGGGCGACCTTTACCTACTGAAGAAGAGTTTGAAATCCTTA AAAATGCTCCACGGCTGGAGACAGGTGCTCCTGCAAGGGTAAAACCATTT GGTGTTGAAGTAAGAAATGTGAAATGTTTAAGATGTGGAAATTTTGGGCA TCAAAGTGGTGATCGTGAGTGTCCATTGAAGGATGCAATAATGCCTAATG AAGAAAGTCGATTGAAAAGAGATGACCCCTTGACTGCTATCATGGCTCAC GTAGATCCTAGTGAGCCTCTCAAGTGGGAGCTGAAGCGACAACCAGGAAA TTTTAGTCCTCCTCGTGGAGGTTTTAAACCTGATGATCCCAATCAGCAGA TAGTTGCTGAGGACATTTTTGATGAATATGGGGGGTTTCTGGCTGGGGAT AGTGTCCCTGACTTGTTGAGCAGCTTGTCGGGCAAACGTAGAAAGAAGTC CAAAAAGAAAAGTAAACACAAGAGGCAGGCATCATCTGATAGTGAAGAAT TAAGAGTTTCTGATGACGATGGGGTGACTTCACCTTCCGATGGTGAAGGC AGGAGGTCAAAGAAGGAGAAGAAACATAAGAAGAAAACGAAGCGAAACTA TTCCAAATCTAGTTCATCTGATGTTTCAGAATGGAATACACATCGTAGAA AATCCAGACACAAGCACAATTATTCATCCGAAGATTCTGATTCTGACAAG TATCATAGAAGTAGAAGGAGCAGGCAAATGCATTCTTATTCATCTGAAGA TGACTCTGATTATCATCATATGATAAAAGAACGCAGAGACAAGTATTCTT ATCGGTCTGAAGCGTCAGACGCTGATAGGCATAATAGAAATAGAAATAGA AAGAACAGGCAAAAGCATTATTTTCCGTCTGAATATGAGGTTGGCAGGCA TAATGTAGGTGAAAAGAGTAGAAAGAAGCATTCACATTCATCTGAGGATT CTGACTTGGGTCGGCATCCGAGAAGAGAAAAGATCAGGCAAAAGCATAGA TATACATCTGCAGATGAATCGGATCGACATCATAGGAGTGAGAAGAGCAG ACACAAGCATTCTCATTCATGACGCTTATATGAAGATTCTGACTCTTGAT GTACATGACAGAAGTAAACCATACCGTCAATATGATCAGTCATAGTCTAG ACTGAGATGAGATTATCGGGCAAGGCTGCAAGCCATTGGAGGAAGAAGCT AAGAGAGCTATTATTTTTGTATCTCTAGTAGTTTGCGTAGCATATGAAGG TGCTTAGCATCATTGTGACAAAAGGGTCTTTGTATCTTGCTTATCTGTGT ACTAATATAGCATCTAGGATCTTGTGAATGCGTCCGAGAATTGAGGATTG ACGATTGTTCGGTGTATAATTTTCATCACCTATAGCATTCTTACTGTTAT TTTCTTTTCTTAATTTTCGATTTTCTTTTTTTTAAAAAAAAAATTAAAGA CAATT back to topprotein sequence of Cs6g19460.4 >Cs6g19460.4_Hzau_Valencia_v2.0-protein ID=Cs6g19460.4_Hzau_Valencia_v2.0-protein; Name=Cs6g19460.4; organism=Citrus sinensis; type=polypeptide; length=382bp MLFCIYCRQPESKPVAEEKKKSRPKDVFGRPLPTEEEFEILKNAPRLETG APARVKPFGVEVRNVKCLRCGNFGHQSGDRECPLKDAIMPNEESRLKRDD PLTAIMAHVDPSEPLKWELKRQPGNFSPPRGGFKPDDPNQQIVAEDIFDE YGGFLAGDSVPDLLSSLSGKRRKKSKKKSKHKRQASSDSEELRVSDDDGV TSPSDGEGRRSKKEKKHKKKTKRNYSKSSSSDVSEWNTHRRKSRHKHNYS SEDSDSDKYHRSRRSRQMHSYSSEDDSDYHHMIKERRDKYSYRSEASDAD RHNRNRNRKNRQKHYFPSEYEVGRHNVGEKSRKKHSHSSEDSDLGRHPRR EKIRQKHRYTSADESDRHHRSEKSRHKHSHS* back to topprotein sequence of Cs6g19460.4_Hzau_Valencia_v1.0 >Cs6g19460.4_Hzau_Valencia_v1.0 ID=Cs6g19460.4_Hzau_Valencia_v1.0; Name=Cs6g19460.4_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=382bp MLFCIYCRQPESKPVAEEKKKSRPKDVFGRPLPTEEEFEILKNAPRLETG APARVKPFGVEVRNVKCLRCGNFGHQSGDRECPLKDAIMPNEESRLKRDD PLTAIMAHVDPSEPLKWELKRQPGNFSPPRGGFKPDDPNQQIVAEDIFDE YGGFLAGDSVPDLLSSLSGKRRKKSKKKSKHKRQASSDSEELRVSDDDGV TSPSDGEGRRSKKEKKHKKKTKRNYSKSSSSDVSEWNTHRRKSRHKHNYS SEDSDSDKYHRSRRSRQMHSYSSEDDSDYHHMIKERRDKYSYRSEASDAD RHNRNRNRKNRQKHYFPSEYEVGRHNVGEKSRKKHSHSSEDSDLGRHPRR EKIRQKHRYTSADESDRHHRSEKSRHKHSHS* back to topmRNA from alignment at chr6:19276800..19280018- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. > ID=; Name=; organism= ; type=; length=3219bp; location=Sequence derived from: chr6:19276800..19280018- (Citrus sinensis AAATTAATGGCTAGTTGGTCAGCAACGTCGTTTCATCTATCGCTCATCGT
TTGTCATCATCGGAATGGAGGACGAGGAAGGAGGAGGGAAGAGATTGAAG
AAAGCATCAGTTGTAGGATCGGGTGAAGTTGATTACAAGACGAAAGCAGG
AACCGCATGGAGCCATTCATACTTAAACCAGAAGCCATGGCATCCTCTCT
CTTACCCTAATCAACGCCGCAAATGGATCGCCGAACAGATGCACTCCCAG
CGCCAGCGCCGCACCGAGGAAGTGACCCGCGAAGTATCTCTTCTTTTCCC
ATCAATTTGTTCTCATTCATTTATTTAACCAATTTTCCTAATCTCTCTAT
GTTTTTTTTTTAGTATGCACAAGAGCAGGAGTTCTTTCGCCAAACATCTC
TTATTTCCAAGAAAGACAAGGAAAAGGTACAGTTTTTACTACTTATAAGC
GTTTGATTTAAAACCCCAGATGGATTTTTTTTTTCTTTTTTGTTATAGTA
TAGTTACTTGTTTATTCTGTTGATTTGGCGTAGATGGAGACTATGCAAGC
TGTTAGCTTTATGTATGTTCGTCCACCCGGTTACAATGCTGAAAGCGCTA
AGGCTGCGGAACTTGAAGAAGGGAGGAAGAAACAAGGAGACTCATCTCAA
GAACCAGCTTCAAATCCAATGTATTCTGTTATTATTCTTATTATTGTCAT
TAATCATTGCCACTAGAAAGCATTTGTATAATTGTTTCATTTTGTGGTAA
TGTCAGATGTTGTTTTGTATTTATTGTAGGCAACCAGAGTCGAAGCCTGT
GGCTGAAGAAAAGAAGAAATCAAGGCCAAAAGATGTGTTTGGGCGACCTT
TACCTACTGAAGAAGAGTTTGAAATCCTTAAAAATGCTCCACGGTATGTT
TCGGTCTTGCTCAGAAGCATTTATTATGCATGCTTATTAATACTACTGAA
TTACTTAGTATTGTTTGTTTGAGATTTATGACACTGCTGTGCATGCAATG
ATCTATTGTCTGTTGTGAATATTCCATTATATGTACTTGCCAGTTGAAAT
CTTAAGTGGAATCTTTTATTTGTTTATTAGCTTATACATGCTATCATACT
AAGATTGGCCATCCAAGAGTTCAAATGGCAATGCTGTGGCTTTTAAGTTG
GTTGTGTTCCATGAGCTATTATTATGCTAATATACGAAAGTCTTAGTTGC
ATTTGCTTTAAACAATAACCAGGCTGGAGACAGGTGCTCCTGCAAGGGTA
AAACCATTTGGTGTTGAAGTAAGAAATGTGAAATGTTTAAGATGTGGAAA
TTTTGGGCATCAAAGTGGTGATCGTGAGTGTCCATTGAAGGATGCAATAA
TGCCTAATGAAGAAAGTCGATTGAAAAGAGATGACCCCTTGACTGCTATC
ATGGCTCACGTAGATCCTAGTGAGGTATGTTTTTTTTTTCTTTGGTGTTT
GCTGGAAATTAAGTAAAGGCTGCAAATTGTTAGCCTTGAGACTAGAACTG
AGCTTGAAAAAGTTCATTTCCATACCTGTTGTTTAATTACCCTATTTTGT
ATCTGGATTCTTAATTGTTGTACTGGAAACTATATTTAAAAAGTCACTAA
GTTTGCATGAAAATCTACATGAATGCCAGTCAATGAAAAAATTATAGAGA
GCAATACCCAAATCTCTTCTAATGGCTTCTGTTTTACATGTGAAGTGGAA
TATCACCACTAAGCAATCTAGAAATGAGTATGCATAGCAGTTAGTCACTC
ACTTGTGGAATCATATGTCGAAGATGGGTAGCTTATAAGTTATTTTGCAC
TTATGTTTATAGCTAGTACAAGCTCATGTATATTTCGTTGCCCTTTATTT
TGAACATTTTGCTTGCCTTCTGCACTTTTACAAAGTGGGAGCACTGGCTG
CTTGCTGATGCTATTTTGTTCCATGCAGCCTCTCAAGTGGGAGCTGAAGC
GACAACCAGGAAATTTTAGTCCTCCTCGTGGAGGTTTTAAACCTGATGAT
CCCAATCAGCAGATAGTTGCTGAGGACATTTTTGATGAATATGGGGGTAA
ATGCCCTTCATTAACCACTGAACTTTGTTTTTCCTCGTATCATATAGTAG
TAACTGATACATTTTACTTATTATTCTCCTTCCCCCCAAAATTCTAGGGT
TTCTGGCTGGGGATAGTGTCCCTGACTTGTTGAGCAGCTTGTCGGGCAAA
CGTAGAAAGAAGTCCAAAAAGAAAAGTAAACACAAGAGGCAGGCATCATC
TGATAGTGAAGAATTAAGAGTTTCTGATGACGATGGGGTGACTTCACCTT
CCGATGGTGAAGGCAGGAGGTCAAAGAAGGAGAAGAAACATAAGAAGAAA
ACGAAGCGAAACTATTCCAAATCTAGTTCATCTGATGTTTCAGAATGGAA
TACACATCGTAGAAAATCCAGACACAAGCACAATTATTCATCCGAAGATT
CTGATTCTGACAAGTATCATAGAAGTAGAAGGAGCAGGCAAATGCATTCT
TATTCATCTGAAGATGACTCTGATTATCATCATATGATAAAAGAACGCAG
AGACAAGTATTCTTATCGGTCTGAAGCGTCAGACGCTGATAGGCATAATA
GAAATAGAAATAGAAAGAACAGGCAAAAGCATTATTTTCCGTCTGAATAT
GAGGTTGGCAGGCATAATGTAGGTGAAAAGAGTAGAAAGAAGCATTCACA
TTCATCTGAGGATTCTGACTTGGGTCGGCATCCGAGAAGAGAAAAGATCA
GGCAAAAGCATAGATATACATCTGCAGATGAATCGGATCGACATCATAGG
AGTGAGAAGAGCAGACACAAGCATTCTCATTCATGACGCTTATATGAAGA
TTCTGACTCTTGATGTACATGACAGAAGTAAACCATACCGTCAATATGAT
CAGTCATAGTCTAGACTGAGATGAGATTATCGGGCAAGGCTGCAAGCCAT
TGGAGGAAGAAGCTAAGAGAGCTATTATTTTTGTATCTCTAGTAGTTTGC
GTAGCATATGAAGGTGCTTAGCATCATTGTGACAAAAGGGTCTTTGTATC
TTGCTTATCTGTGTACTAATATAGCATCTAGGATCTTGTGAATGCGTCCG
AGAATTGAGGATTGACGATTGTTCGGTGTATAATTTTCATCACCTATAGC
ATTCTTACTGTTATTTTCTTTTCTTAATTTTCGATTTTCTTTTTTTTAAA
AAAAAAATTAAAGACAATT back to topCoding sequence (CDS) from alignment at chr6:19276800..19280018- >Cs6g19460.4_Hzau_Valencia_v1.0 ID=Cs6g19460.4_Hzau_Valencia_v1.0; Name=Cs6g19460.4; organism=Citrus sinensis; type=CDS; length=1146bp; location=Sequence derived from: chr6:19276800..19280018- (Citrus sinensis ATGTTGTTTTGTATTTATTGTAGGCAACCAGAGTCGAAGCCTGTGGCTGA AGAAAAGAAGAAATCAAGGCCAAAAGATGTGTTTGGGCGACCTTTACCTA CTGAAGAAGAGTTTGAAATCCTTAAAAATGCTCCACGGCTGGAGACAGGT GCTCCTGCAAGGGTAAAACCATTTGGTGTTGAAGTAAGAAATGTGAAATG TTTAAGATGTGGAAATTTTGGGCATCAAAGTGGTGATCGTGAGTGTCCAT TGAAGGATGCAATAATGCCTAATGAAGAAAGTCGATTGAAAAGAGATGAC CCCTTGACTGCTATCATGGCTCACGTAGATCCTAGTGAGCCTCTCAAGTG GGAGCTGAAGCGACAACCAGGAAATTTTAGTCCTCCTCGTGGAGGTTTTA AACCTGATGATCCCAATCAGCAGATAGTTGCTGAGGACATTTTTGATGAA TATGGGGGGTTTCTGGCTGGGGATAGTGTCCCTGACTTGTTGAGCAGCTT GTCGGGCAAACGTAGAAAGAAGTCCAAAAAGAAAAGTAAACACAAGAGGC AGGCATCATCTGATAGTGAAGAATTAAGAGTTTCTGATGACGATGGGGTG ACTTCACCTTCCGATGGTGAAGGCAGGAGGTCAAAGAAGGAGAAGAAACA TAAGAAGAAAACGAAGCGAAACTATTCCAAATCTAGTTCATCTGATGTTT CAGAATGGAATACACATCGTAGAAAATCCAGACACAAGCACAATTATTCA TCCGAAGATTCTGATTCTGACAAGTATCATAGAAGTAGAAGGAGCAGGCA AATGCATTCTTATTCATCTGAAGATGACTCTGATTATCATCATATGATAA AAGAACGCAGAGACAAGTATTCTTATCGGTCTGAAGCGTCAGACGCTGAT AGGCATAATAGAAATAGAAATAGAAAGAACAGGCAAAAGCATTATTTTCC GTCTGAATATGAGGTTGGCAGGCATAATGTAGGTGAAAAGAGTAGAAAGA AGCATTCACATTCATCTGAGGATTCTGACTTGGGTCGGCATCCGAGAAGA GAAAAGATCAGGCAAAAGCATAGATATACATCTGCAGATGAATCGGATCG ACATCATAGGAGTGAGAAGAGCAGACACAAGCATTCTCATTCATGA back to top
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