Cs6g20160.1, Cs6g20160.1_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Cs6g20160.1 vs. DB:SwissProt
Match: PUB40_ARATH (U-box domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=PUB40 PE=2 SV=2) HSP 1 Score: 499.975 bits (1286), Expect = 1.070e-171 Identity = 310/517 (59.96%), Postives = 385/517 (74.47%), Query Frame = 1 Query: 109 PQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVRASMESSQSKGKAMAVSEKELIRGVKEKPSVSFNHAVSELTRRPAYFYAXXXXXXXXXXXXXXTPPLQLTTRPSCYXXXXXXXXE-LEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPXXXXXXXXXXXXXYTXXXXXXXXXXXXXXXEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVXXXXXXXXXXXKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH-GGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAX----XXXXGVDWDELLDSGLVSRSRFRLGYGRGE-STGNSSEF 1638 P E P EFLCP+SGSLMADP++VSSGH++ERAC CKTLGFTPT PDFSTVIPNLALKS I +WC ++ PPKPL ++AEKL+ A ME + K ++VSEKELI+ +++KPSV NHA +EL RRP YF +SS + S LQLTT+PSC+SS SS E LEP N +E+ + KLKS ++ E+EEALIS+R++TR E +R+SLCT R++ AL+SLI+SRY VQVN A LVNLSLEK NK+ IVRSG+VPP++DVL GS EAQEH+ G IFSLAL+D+NKTAIGVLG L PLLHL++ +E T+HDSALALYHLSLV+SNR KLVKLG+V LLGMV+ G M GRVLLIL N+ASC R A+LDSGGVEC+VG+LR+ E++EST+ESCV+VLY LSH GGLRFKGLA AA E L+++ER G E K+KA+R+LE+++ + E E E +DW+ELL+SG VSRSR RLG GE S NS+EF Sbjct: 53 PTKTEIPAEFLCPISGSLMADPIIVSSGHSYERACVIACKTLGFTPT----PPPDFSTVIPNLALKSAIHSWCERRCFPPPKPLNSAAAEKLILALMEKKPQRRK-VSVSEKELIQAIRDKPSVRLNHAATELDRRPNYFNSSSDESIASSSRT-----LQLTTKPSCFSSPSSGEIESLEP------NLTPEEEALLTKLKSNRISEIEEALISIRRITRIDESSRISLCTTRVISALKSLIVSRYATVQVNVTAVLVNLSLEKSNKVKIVRSGIVPPLIDVLKCGSVEAQEHSAGVIFSLALEDENKTAIGVLGGLEPLLHLIRVGTELTRHDSALALYHLSLVQSNRGKLVKLGAVQMLLGMVSLGQMIGRVLLILCNMASCPVSRPALLDSGGVECMVGVLRRDREVNESTRESCVAVLYGLSHDGGLRFKGLAMAANAVEELVKVERSGRERAKQKARRVLEVLRAKIEDDDLVENEEIDWEELLNSGDVSRSRCRLG---GEKSCVNSAEF 550
BLAST of Cs6g20160.1 vs. DB:SwissProt
Match: PUB38_ARATH (U-box domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=PUB38 PE=1 SV=1) HSP 1 Score: 394.815 bits (1013), Expect = 2.334e-130 Identity = 259/528 (49.05%), Postives = 353/528 (66.86%), Query Frame = 1 Query: 124 PPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDG--TTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVRASMESSQSKGKAMAVSEKELIRGVKEKPSVSFNHAVSELTRRPAYFYAXXXXXXXXXXXXXXTPPLQLTTRPSCYXXXXXXXXELEPQTLNH--------PNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPXXXXXXXXXXXXXYTXXXXXXXXXXXXXXXEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVXXXXXXXXXXXKS-DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKG-----TEL--SESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAXXXXX-----GVDWDELLDSGLVSRSRFRLGYGRGESTGNSSEF 1638 PP EFLCP+S S+M+DPVVVSSG TFER C VC+ L F P L D + PDFS +IPNL +KSTI WC ++ P+P ++S+ E+++R M + + VSE+EL+R V + + +HA SEL R + +++S + + PL LTTRP+C+S S SSSS E +TL H + E+++ KLKS ++ + E+ LI +RK+TR+ +E RVSLC+PR+L L+++I+SRY+ VQ NA+A+LVNLSL+K NK+ IVR G VP ++DVL +GS EAQEHA G IFSL+L+D NK IGVLGAL PLLH L++ +S+RT+HDSALALYHL+L ++NR+KLV+LG+V AL MV SG R LL++ NLA CS+GR A+LD+ V LVG LR+ TE S S +E+CV+ L+ALSH LRFKGLA A EVL +E G+E +EKAK++L+LM+ R E++E +DWD ++DS RSRFR+G T NSS F Sbjct: 33 PPVEFLCPISKSVMSDPVVVSSGQTFERVCVQVCRDLNFIPKLNDDEESLPDFSNIIPNLNMKSTIDTWCDTVGVSRPQPPDYSTVERILRQQMPPPDVE---IRVSEQELLRAVAHRAPMIIHHADSELMGRRDFNNSTTSSDESVIVAHSPFTPLPLTTRPACFSPSPSSSSS-EIETLTHHTFFSNSTSTATEEDEVIYNKLKSSEIFDQEQGLIMMRKMTRTNDEARVSLCSPRILSLLKNMIVSRYSLVQTNALASLVNLSLDKKNKLTIVRLGFVPILIDVLKSGSREAQEHAAGTIFSLSLEDDNKMPIGVLGALQPLLHALRAAESDRTRHDSALALYHLTLNQTNRSKLVRLGAVPALFSMVRSGESASRALLVICNLACCSEGRSAMLDANAVAILVGKLREEWTEEPTEARSSSSARENCVAALFALSHESLRFKGLAKEARAVEVLKEVEERGTERAREKAKKILQLMRERVPEDDEEDGEGSIDWDRVIDSNGSIRSRFRVGGRNRVVTQNSSGF 556
BLAST of Cs6g20160.1 vs. DB:SwissProt
Match: PUB41_ARATH (U-box domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=PUB41 PE=2 SV=1) HSP 1 Score: 355.525 bits (911), Expect = 3.862e-115 Identity = 248/553 (44.85%), Postives = 344/553 (62.21%), Query Frame = 1 Query: 34 KRQKWKISFYRXXXXXXTKAHQLQKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVRASMESS------QSKGKAMAVSEKELIRGVKEKPSVSFNHAVSELTRRPAYFYAXXXXXXXXXXXXXXTPPLQLTTR-------------PSCYXXXXXXXXELEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPXXXXXXXXXXXXXYTXXXXXXXXXXXXXXXEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVXXXXXXXXXXXKS-DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRK-GTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK------GRAXXXXXGVDWDELLDSGLVSRSRFRLGYGRG 1611 +Q+W SF++ SSS +T L + + E P EFLCP++G LM+DPVVVSSG TFER VC+ LG+ P L+DGT PD STVIPNLA+KSTI +WC +Q ++ P+P + + E +VRA M+ QS G E E++ V+E ++ + + R + ++ + S P++ + S ++ S + P S E+E+ F KL+ + + E+ LI LRK+TRS E+ RVSLCT R+L LRSL++SRY VQ NA A++VNLSLEK NK+ IVRSG VP ++DVL +G+ EAQEH GA+FSLAL+D+NK IGVLGA+ PLLH L+S +SER + D+ALALYHLSL+ SNRT+LV+ G+V LL MV SG T R+LL+L NLA+C DG+ A+LD V LVG LR+ G SE+ +E+CV+VL L G LRF+GLA+ AG EVLM +E G+E VKEKA ++L M+ E E +W+ +L++ +SR++F+ G G Sbjct: 4 NKQRW-FSFHQRSSSATTTT--LPQHKHDETPPEFLCPITGFLMSDPVVVSSGQTFERLSVQVCRNLGYIPDLLDGTRPDLSTVIPNLAMKSTIFSWCDRQKVDHPRPPDAAYVEGVVRARMDKDPNPSPGQSPGPGDKDPEPEILPPVEENSPSDYDAVMEAIRARSKNSMSPTTSLESVTIGQSSYHPVRAVSMFSSSTTSSSSGVFAGADSPFRNAMSFSSTDHSSSPMSPEEEEIF-NKLRGTDIFDHEQGLILLRKMTRSSEDLRVSLCTDRILSFLRSLLVSRYNLVQTNAAASVVNLSLEKQNKVKIVRSGFVPLLIDVLKSGTTEAQEHVAGALFSLALEDENKMVIGVLGAVEPLLHALRSSESERARQDAALALYHLSLIPSNRTRLVRAGAVPTLLSMVRSGDSTSRILLVLCNLAACPDGKGAMLDGNAVAILVGKLREVGGGDSEAARENCVAVLLTLCQGNLRFRGLASEAGAEEVLMEVEENGNERVKEKASKILLAMRGGGGGESEFGENAEAREWNRMLEATGLSRTQFQGGQNGG 552
BLAST of Cs6g20160.1 vs. DB:SwissProt
Match: PUB39_ARATH (U-box domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=PUB39 PE=2 SV=2) HSP 1 Score: 320.472 bits (820), Expect = 7.278e-102 Identity = 241/524 (45.99%), Postives = 330/524 (62.98%), Query Frame = 1 Query: 37 RQKWKISFYRXXXXXXTKAHQLQKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVRASMESSQSKGKAMAVSEKELIRGVKEKPSVSFNHAVSELTRRPAYFYAXXXXXXXXXXXXXXTPPLQLTTRPSCYXXXXXXXXELEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPXXXXXXXXXXXXXYTXXXXXXXXXXXXXXXEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVXXXXXXXXXXXKS-DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRK--GTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRM--ERVGSEHVKEKAKRMLELMKGRAXXXXXGV---DWDELLDSGLVSRS 1584 R KW SF+ S+ +T Q P E P EFLCP++G LM+DPVVV+SG TFER VC+ L F P L DGT PD STVIPNLA+KSTIL+WC + + P+P +++ E +VR M+S G +++ E++ V E + + ++ + A S SS S P Q TRP +S+ SS + P S E+E+ + KL S + E+ LI LRK TRS E TR+SLCT R+L LRSLI+SRY VQ NA A++VNLSLEK NK+ IVRSG VP ++DVL +GS EAQEH GA+FSLA++++NK IGVLGA+ PLLH L+S +SER + D+ALALYHLSL+ +NR++LVK G+V +L M+ SG R+LL+L NLA+CS+G+ A+LD V LVG LR+ G E + +E+CV L LS G +RF+GLA+ AG E+L + GS +KEKA ++L+ ++G E EG +W+ +L++ +SRS Sbjct: 6 RHKW-FSFHHHRSASATTMPQHNSP--GETPTEFLCPITGFLMSDPVVVASGQTFERISVQVCRNLSFAPKLHDGTQPDLSTVIPNLAMKSTILSWCDRNKMEHPRPPDYAYVEGVVRTRMDS-LPPGSGHRIAKSEILPPVAENSNSNSDY--------DSVMGAIRSRSRTSLSSTTSLPLHQ--TRPINHSTRIQSSFSTSDYSSFPPMSPEEEEIY-NKLTSVDTIDHEQGLIQLRKTTRSNETTRISLCTDRILSLLRSLIVSRYNIVQTNAAASIVNLSLEKPNKLKIVRSGFVPLLIDVLKSGSTEAQEHVIGALFSLAVEEENKMVIGVLGAVEPLLHALRSSESERARQDAALALYHLSLIPNNRSRLVKAGAVPMMLSMIRSGESASRILLLLCNLAACSEGKGAMLDGNAVSILVGKLRESGGAESDAAARENCVGALLTLSVGNMRFRGLASEAGAEEILTEIVESESGSGRLKEKASKILQTLRGGGSEFGEGAEAREWNRMLEASGLSRS 514
BLAST of Cs6g20160.1 vs. DB:SwissProt
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUB4 PE=1 SV=3) HSP 1 Score: 95.1301 bits (235), Expect = 4.218e-19 Identity = 85/276 (30.80%), Postives = 153/276 (55.43%), Query Frame = 1 Query: 694 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPXXXXXXXXXXXXXYTXXXXXXXXXXXXXXXEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVXXXXXXXXXXXKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVN-SGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR 1518 V++LKS + +A LR L + + R+ + ++ L L+ S + Q NAV AL+NLS+ NK I +G + P++ VL GS+EA+E++ +FSL++ ++NK IG GA+ PL+ LL + + R + D+A AL++LS+ + N+ +V+ G+V L+ +++ + M + + +L NLA+ +GR A+ GG+ LV ++ G S +E+ + L LS RF + G L+ + + G+ +EKA+ +L + + Sbjct: 546 LVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPLLVEVVELG---SARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKAQALLSYFRNQ 818 HSP 2 Score: 63.5438 bits (153), Expect = 3.322e-9 Identity = 31/85 (36.47%), Postives = 45/85 (52.94%), Query Frame = 1 Query: 130 GEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLEFSSAEKL 384 +F CP+S +M DPV+VSSG T+E+A LG T +T+IPN +K+ I NWC + P P + +S +L Sbjct: 232 ADFFCPLSLEVMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPKTRQTLTHTTLIPNYTVKALIANWCETNDVKLPDPNKSTSLNEL 316
BLAST of Cs6g20160.1 vs. DB:SwissProt
Match: PUB12_ORYSJ (U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 8.809e-19 Identity = 70/204 (34.31%), Postives = 113/204 (55.39%), Query Frame = 1 Query: 904 NKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVXXXXXXXXXXXKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMV--NSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELM 1509 NK IV S +P IV+VL GS E +E+A +FSL++ D+NK IG GA+PPL++LL S R + D+A A+++L + + N+ + VK G V L+ + +G M L +L LA +G++ + S + LV +++ G S +E+ ++L+ L A AAG+ + L + G++ K KA +LELM Sbjct: 398 NKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGKIVIARSEPIPPLVEVIKTG---SPRNRENAAAILWLLCSADTEQTLAAKAAGVEDALKELSETGTDRAKRKASSILELM 598 HSP 2 Score: 63.5438 bits (153), Expect = 2.736e-9 Identity = 33/90 (36.67%), Postives = 45/90 (50.00%), Query Frame = 1 Query: 127 PGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVRAS 396 P EF CP+S LM DPV+VSSG T+ER+C G +++ PN LKS I WC + PK + S +K ++S Sbjct: 229 PDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVLKSLISQWCEANGIELPKNKQNSRDKKAAKSS 318
BLAST of Cs6g20160.1 vs. DB:SwissProt
Match: PUB10_ARATH (U-box domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=PUB10 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.123e-18 Identity = 72/206 (34.95%), Postives = 109/206 (52.91%), Query Frame = 1 Query: 904 NKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVXXXXXXXXXXXKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMV---NSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK 1512 NK LI+ +G V IV VL AGS EA+E+A +FSL+L D+NK IG GA+ L+ LL+ S R + D+A AL++L + + N+ + V+ G V L+ M+ +S M L IL LAS + A+L + + L+ L+K +E+ ++L L G LM + R G+E K KA +LEL++ Sbjct: 417 NKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALTILSVLASNQVAKTAILRANAIPPLIDCLQKD---QPRNRENAAAILLCLCKRDTEKLISIGRLGAVVPLMELSRDGTERAKRKANSLLELLR 619 HSP 2 Score: 58.5362 bits (140), Expect = 1.181e-7 Identity = 32/86 (37.21%), Postives = 43/86 (50.00%), Query Frame = 1 Query: 103 QKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHV---CKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPP 351 QK P +FLCP+S LM DP +VS+G T+ER+ C L T +F T+ PN L+S I WC K ++ P Sbjct: 236 QKSDNLTIPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKT--QQKLENF-TLTPNYVLRSLISQWCTKHNIEQP 318
BLAST of Cs6g20160.1 vs. DB:SwissProt
Match: PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.115e-18 Identity = 67/205 (32.68%), Postives = 116/205 (56.59%), Query Frame = 1 Query: 904 NKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVXXXXXXXXXXXKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNS--GHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK 1512 NK IV +G + IV+VL GS EA+E+A +FSL++ D+NK AIG GA+ L+ LL+ + R + D+A A+++L + + N+++ VK G V+ L ++ G M L IL L++ +G+ A+ ++ + LV ++R G S +E+ ++L+ L G + +A G L + G++ K KA +LEL++ Sbjct: 420 NKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQEGKTAIAEAESIPVLVEIIRTG---SPRNRENAAAILWYLCIGNIERLNVAREVGADVALKELTENGTDRAKRKAASLLELIQ 621
BLAST of Cs6g20160.1 vs. DB:SwissProt
Match: PUB11_ARATH (U-box domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=PUB11 PE=2 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 2.460e-17 Identity = 69/206 (33.50%), Postives = 113/206 (54.85%), Query Frame = 1 Query: 904 NKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVXXXXXXXXXXXKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSG---HMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK 1512 NK LI+ +G V IV VL AG+ EA+E+A +FSL+L D+NK IG GA+P L+ LL++ + R + D+A AL++L + N+ + V+ G V AL+ M++ M L IL LA+ D + A++ + + L+G+L+ +E+ ++L +L G LM + + G+E K KA +LEL++ Sbjct: 406 NKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKSAIVKANTLPALIGILQTD---QTRNRENAAAILLSLCKRDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLR 608
BLAST of Cs6g20160.1 vs. DB:SwissProt
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.392e-16 Identity = 70/202 (34.65%), Postives = 110/202 (54.46%), Query Frame = 1 Query: 904 NKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVXXXXXXXXXXXKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNS--GHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLE 1503 NK IV +G +P IV VL GS EA+E+A +FSL++ D+NK IG LGA+PPL+ LL ++R + D+A AL++L + + N+ K ++ G + L ++ M L IL L+S +G+ + S V LV +R G S +E+ +VL L G + A G+ L+ + G++ K KA ++LE Sbjct: 427 NKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEGKAIIGSSDAVPSLVEFIRTG---SPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQLLE 625 HSP 2 Score: 68.1662 bits (165), Expect = 1.014e-10 Identity = 30/77 (38.96%), Postives = 40/77 (51.95%), Query Frame = 1 Query: 127 PGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPKP 357 P +F CP+S +M DPV+VSSG T+ER C G + +T+ PN L+S I WC + PPKP Sbjct: 257 PDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLTPNYVLRSLIAQWCEANDIEPPKP 333 The following BLAST results are available for this feature:
BLAST of Cs6g20160.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cs6g20160.1_Hzau_Valencia_v1.0 ID=Cs6g20160.1_Hzau_Valencia_v1.0; Name=Cs6g20160.1; organism=Citrus sinensis; type=mRNA; length=2245bpback to top protein sequence of Cs6g20160.1 >Cs6g20160.1_Hzau_Valencia_v2.0-protein ID=Cs6g20160.1_Hzau_Valencia_v2.0-protein; Name=Cs6g20160.1; organism=Citrus sinensis; type=polypeptide; length=547bpback to top protein sequence of Cs6g20160.1_Hzau_Valencia_v1.0 >Cs6g20160.1_Hzau_Valencia_v1.0 ID=Cs6g20160.1_Hzau_Valencia_v1.0; Name=Cs6g20160.1_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=547bpback to top mRNA from alignment at chr6:19759379..19761623+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2245bp; location=Sequence derived from: chr6:19759379..19761623+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at chr6:19759379..19761623+ >Cs6g20160.1_Hzau_Valencia_v1.0 ID=Cs6g20160.1_Hzau_Valencia_v1.0; Name=Cs6g20160.1; organism=Citrus sinensis; type=CDS; length=1641bp; location=Sequence derived from: chr6:19759379..19761623+ (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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