Cs6g20420.1, Cs6g20420.1_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis

Transcript Overview


Name	Cs6g20420.1
Unique Name	Cs6g20420.1_Hzau_Valencia_v1.0
Type	mRNA
Organism	Citrus sinensis (Sweet orange)
Sequence length	2051

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus sinensis Valencia genome v1.0 (HZAU)	2013-01-22
C. sinensis v2.0, HZAU CDS	2018-06-07
C. sinensis v2.0 peptides	2018-06-21

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cscsiL107	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
cscsiL330	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
csicsiL108	Citrus sinensis Valencia genome v1.0 (HZAU)	Citrus sinensis
csicsiR148	Citrus sinensis Valencia genome v1.0 (HZAU)	Citrus sinensis
cccsiL070	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cccsiL182	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cmcsiL339	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmcsiL385	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmcsiL439	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
csifhR525	Fortunella hindsii genome v1.0	Fortunella hindsii
csifhR577	Fortunella hindsii genome v1.0	Fortunella hindsii
csifhR593	Fortunella hindsii genome v1.0	Fortunella hindsii
csifhR605	Fortunella hindsii genome v1.0	Fortunella hindsii
cccsiL508	Citrus clementina genome v1.0 (JGI)	Citrus clementina
csiptR372	Poncirus trifoliata genome v1.3.1 (JGI)	Poncirus trifoliata
csiptR374	Poncirus trifoliata genome v1.3.1 (JGI)	Poncirus trifoliata
csiptR387	Poncirus trifoliata genome v1.3.1 (JGI)	Poncirus trifoliata
clacsiL333	Citrus limon L. Burm f. genome v1.0 - Alternative	Citrus limon
clpcsiL399	Citrus limon L. Burm f. genome v1.0 - Primary	Citrus limon
clacsiL386	Citrus limon L. Burm f. genome v1.0 - Alternative	Citrus limon
clpcsiL443	Citrus limon L. Burm f. genome v1.0 - Primary	Citrus limon
clacsiL431	Citrus limon L. Burm f. genome v1.0 - Alternative	Citrus limon
csidvaR333	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
csidvbR352	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
csiswoR347	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
csiswoR359	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
csiswoR371	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
csiswR404	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
csiswR407	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
csiswR433	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis

Orthologs


Gene/Transcript	Assembly	Species
Ciclev10011523m	Citrus clementina genome v1.0 (JGI)	Citrus clementina
CL6G024327011.t1_pri	Citrus limon L. Burm f. genome v1.0 - Primary	Citrus limon
Cg6g023660.1	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
sjg106450.1	Fortunella hindsii genome v1.0	Fortunella hindsii
sjg074690.1	Fortunella hindsii genome v1.0	Fortunella hindsii
CL6G060203012.t1_alt	Citrus limon L. Burm f. genome v1.0 - Alternative	Citrus limon
Ptrif.0006s2088.1.v1.3.1	Poncirus trifoliata genome v1.3.1 (JGI)	Poncirus trifoliata

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Cs_ont_6g002030.1	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
Cs6g_pb018970.1	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
gene-KPL71_019279-mRNA1	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
gene-KPL70_019095-mRNA1	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
orange1.1g010603m.v1.1	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Cs6g20420	Cs6g20420_Hzau_Valencia_v1.0	Citrus sinensis	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g20420.1	Cs6g20420.1_Hzau_Valencia_v2.0-protein	Citrus sinensis	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g20420.1.utr3.1	Cs6g20420.1.utr3.1_Hzau_Valencia_v1.0	Citrus sinensis	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g20420.1.cds.2	Cs6g20420.1.cds.2_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g20420.1.cds.1	Cs6g20420.1.cds.1_Hzau_Valencia_v1.0	Citrus sinensis	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g20420.1.exon.2	Cs6g20420.1.exon.2_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g20420.1.exon.1	Cs6g20420.1.exon.1_Hzau_Valencia_v1.0	Citrus sinensis	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g20420.1.utr5.1	Cs6g20420.1.utr5.1_Hzau_Valencia_v1.0	Citrus sinensis	five_prime_UTR

Homology

[Close]

BLAST of Cs6g20420.1 vs. DB:SwissProt
Match: D6KL2_ARATH (Serine/threonine-protein kinase D6PKL2 OS=Arabidopsis thaliana OX=3702 GN=D6PKL2 PE=1 SV=1)

HSP 1 Score: 604.749 bits (1558), Expect = 0.000e+0
Identity = 302/459 (65.80%), Postives = 354/459 (77.12%), Query Frame = 1

Query:  187 ESGKSSLSTGDANE-------ASFRSACLSKPHKGNDMKWDAVQCVKSKDGDLGLGHFRLLKKLGCGDIGSVYLAELRDMGCLFAMKVMDKGMLAGRKKLMRAQTEREILSLLDHPFLPTLYSHFETDKFSCLLMEFCSGGDLHTLRQRQPGKHFSEQATRFYASEVLLALEYLHMMGVVYRDLKPENVLVREDGHIMLSDFDLSLRCFVSPKLVQSS---DDPACRISSYCIQPSCIDPACKLPVCVEPSCLQPSCFKPRFLXXXXXXXXXXXXXLTNS-DSLPVLIAEPTSARSMSFVGTHEYLAPEIIRGDGHGSAVDWWTFGIFFYELLLGRTPFKGNGNRETLFNVVGQPLKFPEGSSISFAAKDLIRGLLVKDPPKRLGFKRGATEIKQHPFFESVNWALIRSTHPPEIPKPVDLSFINHKQRTPIPQNDKGAT----DSDRSSGPFLDFEFF 1518
            ESGKSS+  G  +         S  S+ ++KPHK ND++W+A+Q V+ +DG LGL HFRLLK+LGCGDIGSVYL+EL    C FAMKVMDK  LA RKKL+RAQTEREIL  LDHPFLPTLY+HFET+KFSCL+MEFC GGDLHTLRQRQPGKHFSEQA +FY +E LLALEYLHM+G+VYRDLKPENVLVREDGHIMLSDFDLSLRC VSP LV+S+    DP  R + YC+QP+CI+P+C  P C  P+    +CF PR   SK+ K +  K    N    LP L+AEPT ARSMSFVGTHEYLAPEII+G+GHGSAVDWWTFGIF YELL GRTPFKG+GNR+TLFNVVGQPL+FPE   +SFAA+DLIRGLL+K+P +RLGFKRGATE+KQHPFFE VNWALIR   PPEIPKPV+L           P + K A     ++ + S  +L+F+FF
Sbjct:  134 ESGKSSICRGSTSSDVSDESSCSSFSSTVNKPHKANDLRWEAIQAVRVRDGLLGLSHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKTSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFSEQAVKFYIAESLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCLVSPTLVKSAAIESDP-LRKNVYCVQPACIEPSCIQPSCTVPT----TCFSPRLFSSKSKKDRKPKNDTANQVRPLPELVAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSGNRQTLFNVVGQPLRFPETPVVSFAARDLIRGLLMKEPQQRLGFKRGATEVKQHPFFEGVNWALIRCATPPEIPKPVELE-KGAVSVAEAPSSQKTAAGLVLNAQKGSDNYLEFDFF 586

[Close]

BLAST of Cs6g20420.1 vs. DB:SwissProt
Match: G11A_ORYSI (Protein kinase G11A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_021818 PE=2 SV=1)

HSP 1 Score: 592.808 bits (1527), Expect = 0.000e+0
Identity = 284/446 (63.68%), Postives = 347/446 (77.80%), Query Frame = 1

Query:  220 ANEASFRSAC-----LSKPHKGNDMKWDAVQCVKSKDGDLGLGHFRLLKKLGCGDIGSVYLAELRDMGCLFAMKVMDKGMLAGRKKLMRAQTEREILSLLDHPFLPTLYSHFETDKFSCLLMEFCSGGDLHTLRQRQPGKHFSEQATRFYASEVLLALEYLHMMGVVYRDLKPENVLVREDGHIMLSDFDLSLRCFVSPKLVQSS--DDPACRIS--SYCIQPSCIDPACKLPVCVEPSCLQP-SCFKPRFLXXXXXXXXXXXXXLTNSDSLPVLIAEPTSARSMSFVGTHEYLAPEIIRGDGHGSAVDWWTFGIFFYELLLGRTPFKGNGNRETLFNVVGQPLKFPEGSSISFAAKDLIRGLLVKDPPKRLGFKRGATEIKQHPFFESVNWALIRSTHPPEIPKPVDLSFINHKQRTPIPQNDKGATDSD---RSSGPFLDFEFF 1518
            +++ S  SAC     ++KPHK ND +W+A+Q ++++DG LGL HF+LLKKLGCGDIGSVYL+EL      FAMKVMDK  LA RKKL+RAQTE+EIL  LDHPFLPTLY+HFETDKFSCL+MEFC GGDLHTLRQRQ GK+F EQA +FY +E+LLA+EYLHM+G++YRDLKPENVLVREDGHIMLSDFDLSLRC VSP L++SS  D  A R +  +YC+QP+C++P+C     ++PSC  P +CF PRF        K +   +      P LIAEP+ ARSMSFVGTHEYLAPEII+G+GHGSAVDWWTFGIF YELL G+TPFKG+GNR TLFNV+GQPL+FPE   +SF+A+DLIRGLLVK+P +RLG KRGATEIKQHPFFE VNWALIR   PPE+P+PV+   I    + P+  ++  A  SD   +SS  +L+F+FF
Sbjct:  151 SSDVSDESACSSISSVTKPHKANDSRWEAIQMIRTRDGILGLSHFKLLKKLGCGDIGSVYLSELNGTKSYFAMKVMDKASLASRKKLLRAQTEKEILQCLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQRGKYFPEQAVKFYVAEILLAMEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLIRSSNPDAEALRKNNQAYCVQPACVEPSC----MIQPSCATPTTCFGPRFFSKSKKDRKPKPEVVNQVSPWPELIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVIGQPLRFPEYPVVSFSARDLIRGLLVKEPQQRLGCKRGATEIKQHPFFEGVNWALIRCASPPEVPRPVE---IERPPKQPVSTSEPAAAPSDAAQKSSDSYLEFDFF 589

[Close]

BLAST of Cs6g20420.1 vs. DB:SwissProt
Match: G11A_ORYSJ (Protein kinase G11A OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0291600 PE=2 SV=1)

HSP 1 Score: 592.423 bits (1526), Expect = 0.000e+0
Identity = 282/446 (63.23%), Postives = 346/446 (77.58%), Query Frame = 1

Query:  220 ANEASFRSAC-----LSKPHKGNDMKWDAVQCVKSKDGDLGLGHFRLLKKLGCGDIGSVYLAELRDMGCLFAMKVMDKGMLAGRKKLMRAQTEREILSLLDHPFLPTLYSHFETDKFSCLLMEFCSGGDLHTLRQRQPGKHFSEQATRFYASEVLLALEYLHMMGVVYRDLKPENVLVREDGHIMLSDFDLSLRCFVSPKLVQSSDDPACRI----SSYCIQPSCIDPACKLPVCVEPSCLQP-SCFKPRFLXXXXXXXXXXXXXLTNSDSLPVLIAEPTSARSMSFVGTHEYLAPEIIRGDGHGSAVDWWTFGIFFYELLLGRTPFKGNGNRETLFNVVGQPLKFPEGSSISFAAKDLIRGLLVKDPPKRLGFKRGATEIKQHPFFESVNWALIRSTHPPEIPKPVDLSFINHKQRTPIPQNDKGATDSD---RSSGPFLDFEFF 1518
            +++ S  SAC     ++KPHK ND +W+A+Q ++++DG LGL HF+LLKKLGCGDIGSVYL+EL      FAMKVMDK  LA RKKL+RAQTE+EIL  LDHPFLPTLY+HFETDKFSCL+MEFC GGDLHTLRQRQ GK+F EQA +FY +E+LLA+EYLHM+G++YRDLKPENVLVREDGHIMLSDFDLSLRC VSP L++SS+  A  +     +YC+QP+C++P+C     ++PSC  P +CF PRF        K +   +      P LIAEP+ ARSMSFVGTHEYLAPEII+G+GHGSAVDWWTFGIF YELL G+TPFKG+GNR TLFNV+GQPL+FPE   +SF+A+DLIRGLLVK+P +RLG KRGATEIKQHPFFE VNWALIR   PPE+P+PV+   I    + P+  ++  A  SD   +SS  +L+F+FF
Sbjct:  151 SSDVSDESACSSISSVTKPHKANDSRWEAIQMIRTRDGILGLSHFKLLKKLGCGDIGSVYLSELSGTKSYFAMKVMDKASLASRKKLLRAQTEKEILQCLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQRGKYFPEQAVKFYVAEILLAMEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLIRSSNPDAEALRKNNQAYCVQPACVEPSC----MIQPSCATPTTCFGPRFFSKSKKDRKPKPEVVNQVSPWPELIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVIGQPLRFPEYPVVSFSARDLIRGLLVKEPQQRLGCKRGATEIKQHPFFEGVNWALIRCASPPEVPRPVE---IERPPKQPVSTSEPAAAPSDAAQKSSDSYLEFDFF 589

[Close]

BLAST of Cs6g20420.1 vs. DB:SwissProt
Match: KPK1_PHAVU (Protein kinase PVPK-1 OS=Phaseolus vulgaris OX=3885 PE=2 SV=1)

HSP 1 Score: 587.8 bits (1514), Expect = 0.000e+0
Identity = 286/426 (67.14%), Postives = 337/426 (79.11%), Query Frame = 1

Query:  250 LSKPHKGNDMKWDAVQCVKSKDGDLGLGHFRLLKKLGCGDIGSVYLAELRDMGCLFAMKVMDKGMLAGRKKLMRAQTEREILSLLDHPFLPTLYSHFETDKFSCLLMEFCSGGDLHTLRQRQPGKHFSEQATRFYASEVLLALEYLHMMGVVYRDLKPENVLVREDGHIMLSDFDLSLRCFVSPKLVQSSDDPACRISSYCIQPSCIDPACKLPVCVEPSCLQPSCFKPRFLXXXXXXXXXXXX---XLTNSDSLPVLIAEPTSARSMSFVGTHEYLAPEIIRGDGHGSAVDWWTFGIFFYELLLGRTPFKGNGNRETLFNVVGQPLKFPEGSSISFAAKDLIRGLLVKDPPKRLGFKRGATEIKQHPFFESVNWALIRSTHPPEIPKPVDLSFINHKQRTPIPQNDKGATDSDRSSGPFLDFEFF 1518
            L KPHK ND++W+A+Q V+++DG L + HFRLLKKLGCGDIGSVYLAEL      FAMKVM+K  LA RKKL+RAQTEREIL  LDHPFLPTLY+HFET+ FSCL+MEFC GGDLH LRQRQPGK+FSE A RFY +EVLL+LEYLHM+G++YRDLKPENVLVREDGHIMLSDFDLSLRC VSP LV+SS++   + S YC+QPSCI+P C     ++P C++PSCF PRFL  K+ K K  K           LP LIAEPT+ARSMSFVGTHEYLAPEII+G+GHGSAVDWWTFGIF YELL GRTPFKG+ NR TLFNV+GQPL+FPE  ++SFAA+DLIRGLLVK+P  RL ++RGATEIKQHPFF++VNWALIR   PPE+P+ V    IN      +PQ +K      + SG +LD +FF
Sbjct:  200 LYKPHKANDIRWEAIQAVRTRDGMLEMRHFRLLKKLGCGDIGSVYLAELSGTRTSFAMKVMNKTELANRKKLLRAQTEREILQSLDHPFLPTLYTHFETEIFSCLVMEFCPGGDLHALRQRQPGKYFSEHAVRFYVAEVLLSLEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCSVSPTLVKSSNNLQTKSSGYCVQPSCIEPTC----VMQPDCIKPSCFTPRFLSGKSKKDKKSKPKNDMHNQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVIGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNVNWALIRCATPPEVPRQV----IN------LPQTEKDL--GVKPSGNYLDIDFF 609

[Close]

BLAST of Cs6g20420.1 vs. DB:SwissProt
Match: D6KL1_ARATH (Serine/threonine-protein kinase D6PKL1 OS=Arabidopsis thaliana OX=3702 GN=D6PKL1 PE=1 SV=1)

HSP 1 Score: 575.089 bits (1481), Expect = 0.000e+0
Identity = 292/456 (64.04%), Postives = 346/456 (75.88%), Query Frame = 1

Query:  184 EESGKS-SLSTGDANEASFRSACLS-----KPHKGNDMKWDAVQCVKSKDGDLGLGHFRLLKKLGCGDIGSVYLAELRDMGCLFAMKVMDKGMLAGRKKLMRAQTEREILSLLDHPFLPTLYSHFETDKFSCLLMEFCSGGDLHTLRQRQPGKHFSEQATRFYASEVLLALEYLHMMGVVYRDLKPENVLVREDGHIMLSDFDLSLRCFVSPKLVQSS--DDPACRISSYCIQPSCIDPACKLPVCVEPSCLQP--SCFKPRFLXXXXXXXXXXXXXLTNSDS-LPVLIAEPTSARSMSFVGTHEYLAPEIIRGDGHGSAVDWWTFGIFFYELLLGRTPFKGNGNRETLFNVVGQPLKFPEGSSISFAAKDLIRGLLVKDPPKRLGFKRGATEIKQHPFFESVNWALIRSTHPPEIPKPVDLSFINHKQRTPIPQNDKGATDSDRSSGPFLDFEFF 1518
            ++SGKS +     +++ S  S C S     KPHK ND++W+A+Q V++K G LGL HFRLLK+LGCGDIG+V+LAEL    C FAMKVMDKG LA RKKL+RAQTEREIL  LDHPFLPTLYSHFET+KFSCL+MEFC GGDLHTLRQRQPGK FSEQA +FY +EVLLA+EYLHM+G++YRDLKPENVLVR+DGH+MLSDFDLSLRC VSP +V+S+       + S YC QP+CI          +PSC+    +CF PR+  SK+ K K  K    N  S LP L+AEPTSARSMSFVGTHEYLAPEII+G+GHGSAVDWWTFGIF YELL G+TPFKG+GNR TLFNVVGQPL+FPE   +SFAA+DLIR LLVK+P  RL +KRGATE+KQHPFFE VNWAL+R   PPEIPKPVD              + K    SD+S+  +L+F+FF
Sbjct:   66 DQSGKSNTCRPSTSSDISDESTCSSFSGNNKPHKANDVRWEAIQAVRTKHGVLGLNHFRLLKRLGCGDIGTVHLAELHGTRCFFAMKVMDKGALASRKKLLRAQTEREILQCLDHPFLPTLYSHFETEKFSCLVMEFCPGGDLHTLRQRQPGKRFSEQAAKFYVAEVLLAMEYLHMLGIIYRDLKPENVLVRDDGHVMLSDFDLSLRCTVSPTVVRSTVLASEGQKNSGYCAQPACIQ---------QPSCISAPTTCFSPRYFSSKSKKDKKMKNETGNQVSPLPELVAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRSLLVKEPQHRLAYKRGATEMKQHPFFEGVNWALVRCASPPEIPKPVDYESAPATPAAATSTSVK----SDQSN--YLEFDFF 506

[Close]

BLAST of Cs6g20420.1 vs. DB:SwissProt
Match: D6PK_ARATH (Serine/threonine-protein kinase D6PK OS=Arabidopsis thaliana OX=3702 GN=D6PK PE=1 SV=1)

HSP 1 Score: 572.007 bits (1473), Expect = 0.000e+0
Identity = 294/461 (63.77%), Postives = 346/461 (75.05%), Query Frame = 1

Query:  187 ESGKSSL-------STGDANEASFRSACLSKPHKGNDMKWDAVQCVKSKDGDLGLGHFRLLKKLGCGDIGSVYLAELRDMGCLFAMKVMDKGMLAGRKKLMRAQTEREILSLLDHPFLPTLYSHFETDKFSCLLMEFCSGGDLHTLRQRQPGKHFSEQATRFYASEVLLALEYLHMMGVVYRDLKPENVLVREDGHIMLSDFDLSLRCFVSPKLVQSSDDPACRISSYCI----QPSCIDPACKLPVCVEPSCLQ---PSCFKPRFLXXXXXXXXXXXXXLTNSD--SLPVLIAEPTSARSMSFVGTHEYLAPEIIRGDGHGSAVDWWTFGIFFYELLLGRTPFKGNGNRETLFNVVGQPLKFPEGSSISFAAKDLIRGLLVKDPPKRLGFKRGATEIKQHPFFESVNWALIRSTHPPEIPKPVDLSFINHKQRTPIPQNDKGATDSDRS-SGPFLDFEFF 1518
            ESGKSS           D +  S  S+ ++KPHK ND++W+A+Q V++K G LGL HFRLLK+LGCGDIG+V+LAEL    C FAMKVMDK  LA RKKL+RAQTEREIL  LDHPFLPTLYSHFET+KFSCL+MEFC GGDLHTLRQRQPGK F+EQA +FY +EVLLA+EYLHM+G++YRDLKPENVLVR+DGH+MLSDFDLSLRC VS  +V+S++  +  +S   +    QP+CI          +PSC+     SCF PRF  SK+ K K  KT   N     LP L+AEPT ARSMSFVGTHEYLAPEII+G+GHGSAVDWWTFGIF YELL G+TPFKG+GNR TLFNVVGQPL+FPE   +SFAA+DLIR LLVK+P  RL +KRGATEIKQHPFFE VNWAL+R   PPEIPKPVDL  +N     P P     A+ S RS    +L+F+FF
Sbjct:   52 ESGKSSTCRPSTSSDISDESTCSSFSSSINKPHKANDVRWEAIQAVRTKHGGLGLNHFRLLKRLGCGDIGTVHLAELNGTRCYFAMKVMDKTALASRKKLLRAQTEREILQCLDHPFLPTLYSHFETEKFSCLVMEFCPGGDLHTLRQRQPGKRFTEQAAKFYVAEVLLAMEYLHMLGIIYRDLKPENVLVRDDGHVMLSDFDLSLRCTVSLSIVRSANVGSEGLSKNSVSCSQQPACIQ---------QPSCISMAPTSCFGPRFFSSKSKKDKKPKTENGNHQVTPLPELVAEPTGARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRSLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALVRCASPPEIPKPVDLEALN-----PTPTVPAAASSSVRSDQSNYLEFDFF 498

[Close]

BLAST of Cs6g20420.1 vs. DB:SwissProt
Match: D6KL3_ARATH (Serine/threonine-protein kinase D6PKL3 OS=Arabidopsis thaliana OX=3702 GN=D6PKL3 PE=1 SV=1)

HSP 1 Score: 540.806 bits (1392), Expect = 0.000e+0
Identity = 275/430 (63.95%), Postives = 325/430 (75.58%), Query Frame = 1

Query:  256 KPHK-GNDMKWDAVQCVKSKDGD-LGLGHFRLLKKLGCGDIGSVYLAELRDMGCLFAMKVMDKGMLAGRKKLMRAQTEREILSLLDHPFLPTLYSHFETDKFSCLLMEFCSGGDLHTLRQRQPGKHFSEQATRFYASEVLLALEYLHMMGVVYRDLKPENVLVREDGHIMLSDFDLSLRCFVSPKLVQ-SSDDPACRISSYCIQPSCIDPACKLPVCVEPSCLQPSCFKPRFLXXXXXXXXXXXXXLTNSDSLPVLIAEPTSARSMSFVGTHEYLAPEIIRGDGHGSAVDWWTFGIFFYELLLGRTPFKGNGNRETLFNVVGQPLKFPEGSSISFAAKDLIRGLLVKDPPKRLGFKRGATEIKQHPFFESVNWALIRSTHPPEIPKPVDLSFINHKQRTPIPQN------DKGATDSDRSSGPFLDFEFF 1518
            KPH+  ND +W A+Q V+S+ G  L    F+L+KKLG GDIG+VYLAEL   G  FA+KVM+K  +A RKKL+RAQTE+EIL  LDHPFLPTLYSHFET+  SCL+MEFC GGDLH+LRQ+Q GK+F EQA RFY +EVLLA+EYLHM+G++YRDLKPENVLVREDGHIMLSDFDLSLRC VSP LV+ ++     + SSYCIQP+C+D +      V+P C+QP CF PRFL     + KS   S      LP LIAEPTSARSMSFVGTHEYLAPEII+G+GHGSAVDWWTFGIF YELL G TPF+G  NR TLFNVVGQPL+FPE  ++SFAA+DLIRGLLVK+P  RL ++RGATEIKQHPFF+SVNWALIR T PP+IP+PV      H  R    Q       DK  T   + SG +L+ +FF
Sbjct:  153 KPHRDNNDKRWVAIQEVRSRVGSSLEAKDFKLIKKLGGGDIGNVYLAELIGTGVSFAVKVMEKAAIAARKKLVRAQTEKEILQSLDHPFLPTLYSHFETEMNSCLVMEFCPGGDLHSLRQKQRGKYFPEQAARFYVAEVLLAMEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVRFAAITLESKSSSYCIQPTCVDQSS---CIVQPDCIQPVCFTPRFLSKGKHRKKSNDMS-RQIRPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGITPFRGGDNRATLFNVVGQPLRFPEHPNVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCTSPPQIPQPVKPMDQAHSVRHGFSQGHGHVGYDKPPTVDVKPSGNYLEIDFF 578

[Close]

BLAST of Cs6g20420.1 vs. DB:SwissProt
Match: AGC17_ARATH (Serine/threonine-protein kinase AGC1-7 OS=Arabidopsis thaliana OX=3702 GN=AGC1-7 PE=1 SV=1)

HSP 1 Score: 527.324 bits (1357), Expect = 0.000e+0
Identity = 267/416 (64.18%), Postives = 311/416 (74.76%), Query Frame = 1

Query:  241 SACLSKPHKGNDMKWDAVQCVKSKDGDLGLGHFRLLKKLGCGDIGSVYLAELRDMGCLFAMKVMDKGMLAGRKKLMRAQTEREILSLLDHPFLPTLYSHFETDKFSCLLMEFCSGGDLHTLRQRQPGKHFSEQATRFYASEVLLALEYLHMMGVVYRDLKPENVLVREDGHIMLSDFDLSLRCFVSPKLVQSSDDPACRISSYCIQP-SCIDPACKLPVCVEPSCLQPSCFKPRFLXXXXXXXXXXXX-XLTNSDSLPVLIAEPTSARSMSFVGTHEYLAPEIIRGDGHGSAVDWWTFGIFFYELLLGRTPFKGNGNRETLFNVVGQPLKFPEGSSISFAAKDLIRGLLVKDPPKRLGFKRGATEIKQHPFFESVNWALIRSTHPPEIPKPVDLSFINHKQRTPIPQNDKGATDSD 1482
            S+  SKPH G D++WDAV  + SK   LG+  FRLLK+LG GDIGSVYL ELR     FAMKVMDK  LA R KL+RAQTEREILS LDHPFLPTLYSHFETDKF CL+MEFC GG+L++LRQ+QP K F+E A RF+ASEVLLALEYLHM+G+VYRDLKPENVLVR+DGHIMLSDFDLSLRC VSP LV+SS   A    S   +P   ID    +       C+QPS F PR L+S     K++    L  + S+P L+AEPT+ +SMSFVGTHEYLAPEIIRG+GHGSAVDWWTFGIF YELL G TPFKG GNR TL NV+GQ L+FPE   +S AA+DLI+GLLVK+P KR+ +KRGATEIKQHPFFE VNWALIRS  PP +P+PVD S    K +  +   D G   ++
Sbjct:  114 SSNPSKPHTGGDIRWDAVNTLTSKGVQLGISDFRLLKRLGYGDIGSVYLVELRGTITYFAMKVMDKASLASRNKLLRAQTEREILSQLDHPFLPTLYSHFETDKFYCLVMEFCGGGNLYSLRQKQPNKCFTEDAARFFASEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCSVSPTLVKSSSVHAAGGGSGSSRPVGLIDEDAAV-----QGCIQPSTFFPRILQSSKKNRKAKSDFGLFVNGSMPELMAEPTNVKSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFIYELLYGATPFKGQGNRATLHNVIGQALRFPEVPHVSSAARDLIKGLLVKEPQKRIAYKRGATEIKQHPFFEGVNWALIRSATPPHVPEPVDFSCYASKDKESMAAVDGGGKKNN 524

[Close]

BLAST of Cs6g20420.1 vs. DB:SwissProt
Match: AGC15_ARATH (Serine/threonine-protein kinase AGC1-5 OS=Arabidopsis thaliana OX=3702 GN=AGC1-5 PE=1 SV=1)

HSP 1 Score: 526.168 bits (1354), Expect = 0.000e+0
Identity = 273/442 (61.76%), Postives = 315/442 (71.27%), Query Frame = 1

Query:  241 SACLSKPHKGNDMKWDAVQCVKSKDGDLGLGHFRLLKKLGCGDIGSVYLAELRDMGCLFAMKVMDKGMLAGRKKLMRAQTEREILSLLDHPFLPTLYSHFETDKFSCLLMEFCSGGDLHTLRQRQPGKHFSEQATRFYASEVLLALEYLHMMGVVYRDLKPENVLVREDGHIMLSDFDLSLRCFVSPKLVQSSDDPACRISSYCIQPSCIDPACKLPVCVEPSCLQPSCFKPRFLXXXXXXXXXXXXXLTNSDSLPVLIAEPTSARSMSFVGTHEYLAPEIIRGDGHGSAVDWWTFGIFFYELLLGRTPFKGNGNRETLFNVVGQPLKFPEGSSISFAAKDLIRGLLVKDPPKRLGFKRGATEIKQHPFFESVNWALIRSTHPPEIPKPVDLS----------------FINHKQRTPIPQNDKGATDSDRSSGPFLDFEFF 1518
            SA   KPH G D++WDA+  + SK   +GL +FRLLK+LG GDIGSVYLA+LR    +FAMKVMDK  LA R KL+RAQTEREILSLLDHPFLPTLYS+FETDKF CL+MEFCSGG+LH+LRQ+QP + F+E+A RFYASEVLLALEYLHM+GVVYRDLKPEN+LVR++GHIMLSDFDLSLRC  +P LV+S        SS C     I         V   C+ PS F PR L SK T+     + L    S+P L+AEPT  RSMSFVGTHEYLAPEIIRG+GHGSAVDWWTFGIF YELL G TPFKG GNR TL NVVGQPLKFP+   +S AA+DLIRGLLVKDP +R+ + RGATEIKQHPFFE VNWAL+RS  PP IP PVDL                   N  +  P+     G TD       ++DFE+F
Sbjct:  153 SAQPFKPHTGGDVRWDAINSIASKGPQIGLDNFRLLKRLGYGDIGSVYLADLRGTNAVFAMKVMDKASLASRNKLLRAQTEREILSLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPSRRFTEEAARFYASEVLLALEYLHMLGVVYRDLKPENILVRDEGHIMLSDFDLSLRCTFNPTLVKS--------SSVCSGGGAI---LNEEFAVN-GCMHPSAFLPRLLPSKKTRKAKSDSGL-GGLSMPELMAEPTDVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFLYELLHGTTPFKGQGNRATLHNVVGQPLKFPDTPHVSSAARDLIRGLLVKDPHRRIAYTRGATEIKQHPFFEGVNWALVRSAAPPHIPDPVDLGPYAAARGKTKSHGGGDHCNSMKPEPLVACAAGPTDDTA----YIDFEYF 577

[Close]

BLAST of Cs6g20420.1 vs. DB:SwissProt
Match: RHS3_ARATH (Serine/threonine-protein kinase RHS3 OS=Arabidopsis thaliana OX=3702 GN=RHS3 PE=1 SV=1)

HSP 1 Score: 511.146 bits (1315), Expect = 2.514e-177
Identity = 261/435 (60.00%), Postives = 311/435 (71.49%), Query Frame = 1

Query:  256 KPHKGNDMKWDAVQCVKSKDGDLGLGHFRLLKKLGCGDIGSVYLAELRDMG--CLFAMKVMDKGMLAGRKKLMRAQTEREILSLLDHPFLPTLYSHFETDKFSCLLMEFCSGGDLHTLRQRQPGKHFSEQATRFYASEVLLALEYLHMMGVVYRDLKPENVLVREDGHIMLSDFDLSLRCFVSPKLVQSSDDPACRISSYCIQPSCIDPACKLPVCVEPSCLQPSCFKPRFLXXXXXXXXXXXXXLTNSDSLPVLIAEPTSARSMSFVGTHEYLAPEIIRGDGHGSAVDWWTFGIFFYELLLGRTPFKGNGNRETLFNVVGQPLKFPEGSSISFAAKDLIRGLLVKDPPKRLGFKRGATEIKQHPFFESVNWALIRSTHPPEIPKPVDLSFINHKQRTPIP------------QNDKGATDSDRSSGPFLDFEFF 1518
            KPH G D++WDAV  +KS+   LG+  FR+LK+LG GDIGSVYL EL+       FAMKVMDK  L  R KL+RAQTEREILS LDHPFLPTLYSHFETDKF CL+MEFCSGG+L++LRQ+QP K F+E A RF+ASEVLLALEYLHM+G+VYRDLKPENVLVR+DGHIMLSDFDLSLRC V+P LV+S +               ID    +       C QPS F PR L+S     KS+        SLP L+AEPT+ +SMSFVGTHEYLAPEII+ +GHGSAVDWWTFGIF YELL G TPFKG GN+ TL+NV+GQPL+FPE S +S  AKDLI+GLLVK+P  R+ +KRGATEIKQHPFFE VNWALIR   PP +P+PVD S    K++  +P            + +K  +D D     ++ FE+F
Sbjct:   86 KPHTGGDIRWDAVNSLKSRGIKLGISDFRVLKRLGYGDIGSVYLVELKGANPTTYFAMKVMDKASLVSRNKLLRAQTEREILSQLDHPFLPTLYSHFETDKFYCLVMEFCSGGNLYSLRQKQPNKCFTEDAARFFASEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCSVNPTLVKSFNGGGTT--------GIIDDNAAVQ-----GCYQPSAFFPRMLQSSKKNRKSKSDF---DGSLPELMAEPTNVKSMSFVGTHEYLAPEIIKNEGHGSAVDWWTFGIFIYELLHGATPFKGQGNKATLYNVIGQPLRFPEYSQVSSTAKDLIKGLLVKEPQNRIAYKRGATEIKQHPFFEGVNWALIRGETPPHLPEPVDFSCYVKKEKESLPPAATEKKSKMFDEANKSGSDPD-----YIVFEYF 499

The following BLAST results are available for this feature:

BLAST of Cs6g20420.1 vs. DB:SwissProt

BLAST of Cs6g20420.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
D6KL2_ARATH	0.000e+0	65.80	Serine/threonine-protein kinase D6PKL2 OS=Arabidop...	[more]
G11A_ORYSI	0.000e+0	63.68	Protein kinase G11A OS=Oryza sativa subsp. indica ...	[more]
G11A_ORYSJ	0.000e+0	63.23	Protein kinase G11A OS=Oryza sativa subsp. japonic...	[more]
KPK1_PHAVU	0.000e+0	67.14	Protein kinase PVPK-1 OS=Phaseolus vulgaris OX=388...	[more]
D6KL1_ARATH	0.000e+0	64.04	Serine/threonine-protein kinase D6PKL1 OS=Arabidop...	[more]
D6PK_ARATH	0.000e+0	63.77	Serine/threonine-protein kinase D6PK OS=Arabidopsi...	[more]
D6KL3_ARATH	0.000e+0	63.95	Serine/threonine-protein kinase D6PKL3 OS=Arabidop...	[more]
AGC17_ARATH	0.000e+0	64.18	Serine/threonine-protein kinase AGC1-7 OS=Arabidop...	[more]
AGC15_ARATH	0.000e+0	61.76	Serine/threonine-protein kinase AGC1-5 OS=Arabidop...	[more]
RHS3_ARATH	2.514e-177	60.00	Serine/threonine-protein kinase RHS3 OS=Arabidopsi...	[more]

InterPro

Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000719	Protein kinase domain	SMART	SM00220	serkin_6	coord: 113..450 e-value: 2.1E-87 score: 306.3
IPR000719	Protein kinase domain	PFAM	PF00069	Pkinase	coord: 114..261 e-value: 6.5E-37 score: 127.2 coord: 347..450 e-value: 3.5E-22 score: 78.9
IPR000719	Protein kinase domain	PROSITE	PS50011	PROTEIN_KINASE_DOM	coord: 113..450 score: 43.962
None	No IPR available	GENE3D	3.30.200.20		coord: 112..196 e-value: 4.4E-49 score: 169.2
None	No IPR available	GENE3D	1.10.510.10		coord: 197..262 e-value: 4.4E-49 score: 169.2
None	No IPR available	GENE3D	1.10.510.10		coord: 345..468 e-value: 6.5E-37 score: 129.1
None	No IPR available	PANTHER	PTHR24351	RIBOSOMAL PROTEIN S6 KINASE	coord: 20..506
None	No IPR available	PANTHER	PTHR24351:SF84	PROTEIN KINASE	coord: 20..506
None	No IPR available	CDD	cd05574	STKc_phototropin_like	coord: 112..471 e-value: 0.0 score: 512.168
IPR008271	Serine/threonine-protein kinase, active site	PROSITE	PS00108	PROTEIN_KINASE_ST	coord: 234..246
IPR011009	Protein kinase-like domain superfamily	SUPERFAMILY	56112	Protein kinase-like (PK-like)	coord: 338..478 coord: 93..260

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr6:19916893..19919469-
coding sequence from alignment at chr6:19916893..19919469-

mRNA sequence

>Cs6g20420.1_Hzau_Valencia_v1.0 ID=Cs6g20420.1_Hzau_Valencia_v1.0; Name=Cs6g20420.1; organism=Citrus sinensis; type=mRNA; length=2051bp
TGAGAATTTTGAAACACCGTATTATCTTATCCTTCTAAAAACCAGAGTAA
CGGTGTTGGTTAGTGTTTTGTTTGTTTTATATAATCTTTGTTTAGAAAAT
CTGAATGGCTTCTGTCTTCCTCGTGAATTGGGTCTTCTCTCTTCCTCTCT
CTCTCTCTCTTTCTCTGTGTGGCCTGTGCTTTGTTTTGTCTCCAAGCTGT
AACACATTCTTGGACACTGTACACAATGAGAGAGAAATAAAAAAATGACC
CCAAACACAACTCACATTTCAAATTTGAATGCCGTTTTAACCCTCCTTGT
GTTATAAGCCCGCGTCTCCCTCGCTCACTTTGACCACCTCGGTCATATCA
ACCTTGACCTCCTCAATTCTTAACCCAAAAAAAAAAAAAAAGTTTTCCTT
CTTTTAGGCATTTCATCAAACAGTCGCACCATAGTGTCTTAAGCATGAAT
AAGCAACTCAATAGCGCTACAAATTATGACACTGAGTCTGTAACTAGTAT
CAGCATGCATAGCGTAAGTTTTTGTAGCAGTAGTACTGTTTCTGGGTCTG
ATACTAGTGTGAGTAGTAACTTGAGCAATGCCACTATTGAAGCCAAAAAG
GGTGTTGATTGTCTTGCTCATAGTGAAGAAGAGAGTGGAAAGAGTAGTTT
AAGTACTGGTGACGCAAATGAGGCTAGTTTTAGGAGTGCTTGCCTTTCGA
AACCTCACAAAGGCAATGACATGAAATGGGATGCAGTGCAATGTGTGAAA
AGTAAAGATGGGGACTTGGGGTTGGGACATTTTAGGCTTTTGAAGAAACT
TGGTTGTGGTGATATAGGGAGTGTATACTTGGCTGAATTGAGAGACATGG
GTTGTTTGTTTGCTATGAAAGTGATGGATAAAGGTATGTTAGCTGGGAGG
AAGAAGTTGATGAGAGCACAAACTGAGAGAGAGATTTTAAGCTTGTTGGA
TCATCCATTTTTGCCTACCCTGTACTCACATTTTGAGACTGACAAGTTTT
CTTGCTTGTTGATGGAGTTTTGTAGCGGTGGAGACCTTCATACTCTCCGG
CAGCGCCAGCCCGGCAAGCATTTTTCGGAACAAGCAACAAGGTTTTATGC
TTCTGAAGTGCTTCTTGCACTTGAGTATCTGCACATGATGGGTGTGGTTT
ACAGGGATTTAAAGCCTGAAAACGTGTTGGTGAGGGAGGATGGTCACATA
ATGCTCTCTGACTTTGATTTGTCATTAAGATGTTTTGTAAGTCCTAAGCT
TGTTCAGTCCAGCGATGACCCAGCTTGCAGAATATCTTCTTACTGTATTC
AGCCATCATGCATAGATCCAGCCTGCAAATTACCTGTTTGTGTGGAGCCT
TCTTGCTTACAACCATCTTGCTTTAAGCCTCGTTTCCTCAAGTCCAAGAC
AACAAAGGTGAAAAGTGAAAAAACAAGTCTCACAAATTCGGATTCTCTTC
CCGTACTTATCGCAGAACCAACTAGTGCCCGCTCCATGTCATTTGTTGGG
ACCCATGAATACTTAGCTCCTGAGATAATAAGAGGAGATGGCCATGGAAG
TGCTGTTGATTGGTGGACATTTGGTATTTTCTTTTATGAATTACTGCTTG
GAAGAACACCATTTAAAGGTAATGGAAACAGGGAGACATTATTCAATGTC
GTAGGTCAGCCCCTAAAATTTCCAGAGGGATCGTCAATCAGTTTTGCTGC
TAAGGATTTAATCCGGGGTCTCCTTGTTAAGGACCCACCAAAGAGATTAG
GGTTCAAAAGAGGTGCCACAGAGATTAAACAGCATCCTTTCTTTGAAAGT
GTTAACTGGGCATTGATTCGCAGCACTCACCCTCCAGAAATTCCAAAACC
GGTTGATCTCTCATTTATAAATCACAAACAGAGGACACCCATACCTCAAA
ATGACAAAGGAGCTACAGACTCGGATAGGTCTTCAGGCCCTTTCTTAGAT
TTTGAATTTTTCTAGTGAACTTTGGCTGCGAAAATGTACTGATTATTCTT
GAGGTTTTAATTAAATTTTTGCTGTGTATTCTCATGTTCTTAATGAAATC
T

protein sequence of Cs6g20420.1

>Cs6g20420.1_Hzau_Valencia_v2.0-protein ID=Cs6g20420.1_Hzau_Valencia_v2.0-protein; Name=Cs6g20420.1; organism=Citrus sinensis; type=polypeptide; length=507bp
MNKQLNSATNYDTESVTSISMHSVSFCSSSTVSGSDTSVSSNLSNATIEA
KKGVDCLAHSEEESGKSSLSTGDANEASFRSACLSKPHKGNDMKWDAVQC
VKSKDGDLGLGHFRLLKKLGCGDIGSVYLAELRDMGCLFAMKVMDKGMLA
GRKKLMRAQTEREILSLLDHPFLPTLYSHFETDKFSCLLMEFCSGGDLHT
LRQRQPGKHFSEQATRFYASEVLLALEYLHMMGVVYRDLKPENVLVREDG
HIMLSDFDLSLRCFVSPKLVQSSDDPACRISSYCIQPSCIDPACKLPVCV
EPSCLQPSCFKPRFLKSKTTKVKSEKTSLTNSDSLPVLIAEPTSARSMSF
VGTHEYLAPEIIRGDGHGSAVDWWTFGIFFYELLLGRTPFKGNGNRETLF
NVVGQPLKFPEGSSISFAAKDLIRGLLVKDPPKRLGFKRGATEIKQHPFF
ESVNWALIRSTHPPEIPKPVDLSFINHKQRTPIPQNDKGATDSDRSSGPF
LDFEFF*

mRNA from alignment at chr6:19916893..19919469-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=2577bp; location=Sequence derived from: chr6:19916893..19919469- (Citrus sinensis
TGAGAATTTTGAAACACCGTATTATCTTATCCTTCTAAAAACCAGAGTAA
CGGTGTTGGTTAGTGTTTTGTTTGTTTTATATAATCTTTGTTTAGAAAAT
CTGAATGGCTTCTGTCTTCCTCGTGAATTGGGTCTTCTCTCTTCCTCTCT
CTCTCTCTCTTTCTCTGTGTGGCCTGTGCTTTGTTTTGTCTCCAAGCTGT
AACACATTCTTGGACACTGTACACAATGAGAGAGAAATAAAAAAATGACC
CCAAACACAACTCACATTTCAAATTTGAATGCCGTTTTAACCCTCCTTGT
GTTATAAGCCCGCGTCTCCCTCGCTCACTTTGACCACCTCGGTCATATCA
ACCTTGACCTCCTCAATTCTTAACCCAAAAAAAAAAAAAAAGTTTTCCTT
CTTTTAGGCATTTCATCAAACAGTCGCACCATAGTGTCTTAAGCATGAAT
AAGCAACTCAATAGCGCTACAAATTATGACACTGAGTCTGTAACTAGTAT
CAGCATGCATAGCGTAAGTTTTTGTAGCAGTAGTACTGTTTCTGGGTCTG
ATACTAGTGTGAGTAGTAACTTGAGCAATGCCACTATTGAAGCCAAAAAG
GGTGTTGATTGTCTTGCTCATAGTGAAGAAGAGAGTGGAAAGAGTAGTTT
AAGTACTGGTGACGCAAATGAGGCTAGTTTTAGGAGTGCTTGCCTTTCGA
AACCTCACAAAGGCAATGACATGAAATGGGATGCAGTGCAATGTGTGAAA
AGTAAAGATGGGGACTTGGGGTTGGGACATTTTAGGCTTTTGAAGAAACT
TGGTTGTGGTGATATAGGGAGTGTATACTTGGCTGAATTGAGAGACATGG
GTTGTTTGTTTGCTATGAAAGTGATGGATAAAGGTATGTTAGCTGGGAGG
AAGAAGTTGATGAGAGCACAAACTGAGAGAGAGATTTTAAGCTTGTTGGA
TCATCCATTTTTGCCTACCCTGTACTCACATTTTGAGACTGACAAGTTTT
CTTGCTTGTTGATGGAGTTTTGTAGCGGTGGAGACCTTCATACTCTCCGG
CAGCGCCAGCCCGGCAAGCATTTTTCGGAACAAGCAACAAGGTCAGTTCT
TGGTACCCGAGTTTGAAGTTGCTCTTTTTTTTTTTTTTTAACTTGATCTG
TTCGTCAATTTGATTTACATTTGTTAGCGAGAAATATGAGTGTTAATTTA
GGATAATTTTGCAATTTGCAAATCTTTACTTGATGATAATGAATGGTCTA
GTTTTGTTGGTACAAGAAAATCTATCTTCTTACACTTGAACAGAAATGTT
CTAGTATCCATCTAACAGTCCGGTTGGTGCACCTCTTCAAGCCGGGCTTT
GTAAATTTACCGAAATCATCAGTTTTTGGTTTCTCTTTTCCAGTCACATT
ACGTTTTTTAGTAGGAAATTAACAGTGTAGCCTATGGCTGAAGGCATTAA
GAAGATTAGTAATAACCTAGTATAGCACTTACACTGTTGTGGATGTTGTT
TTTTTTTTTTTTTGGTTTCTCCCAATTGATTCACACTGCCTGGTGAGTAT
TGCTCTAATTCCATCAGTAAACATTTCAACATTCAAAGTTATGATTAATT
TGTGATAATTTTTGCAGGTTTTATGCTTCTGAAGTGCTTCTTGCACTTGA
GTATCTGCACATGATGGGTGTGGTTTACAGGGATTTAAAGCCTGAAAACG
TGTTGGTGAGGGAGGATGGTCACATAATGCTCTCTGACTTTGATTTGTCA
TTAAGATGTTTTGTAAGTCCTAAGCTTGTTCAGTCCAGCGATGACCCAGC
TTGCAGAATATCTTCTTACTGTATTCAGCCATCATGCATAGATCCAGCCT
GCAAATTACCTGTTTGTGTGGAGCCTTCTTGCTTACAACCATCTTGCTTT
AAGCCTCGTTTCCTCAAGTCCAAGACAACAAAGGTGAAAAGTGAAAAAAC
AAGTCTCACAAATTCGGATTCTCTTCCCGTACTTATCGCAGAACCAACTA
GTGCCCGCTCCATGTCATTTGTTGGGACCCATGAATACTTAGCTCCTGAG
ATAATAAGAGGAGATGGCCATGGAAGTGCTGTTGATTGGTGGACATTTGG
TATTTTCTTTTATGAATTACTGCTTGGAAGAACACCATTTAAAGGTAATG
GAAACAGGGAGACATTATTCAATGTCGTAGGTCAGCCCCTAAAATTTCCA
GAGGGATCGTCAATCAGTTTTGCTGCTAAGGATTTAATCCGGGGTCTCCT
TGTTAAGGACCCACCAAAGAGATTAGGGTTCAAAAGAGGTGCCACAGAGA
TTAAACAGCATCCTTTCTTTGAAAGTGTTAACTGGGCATTGATTCGCAGC
ACTCACCCTCCAGAAATTCCAAAACCGGTTGATCTCTCATTTATAAATCA
CAAACAGAGGACACCCATACCTCAAAATGACAAAGGAGCTACAGACTCGG
ATAGGTCTTCAGGCCCTTTCTTAGATTTTGAATTTTTCTAGTGAACTTTG
GCTGCGAAAATGTACTGATTATTCTTGAGGTTTTAATTAAATTTTTGCTG
TGTATTCTCATGTTCTTAATGAAATCT

Coding sequence (CDS) from alignment at chr6:19916893..19919469-

>Cs6g20420.1_Hzau_Valencia_v1.0 ID=Cs6g20420.1_Hzau_Valencia_v1.0; Name=Cs6g20420.1; organism=Citrus sinensis; type=CDS; length=1521bp; location=Sequence derived from: chr6:19916893..19919469- (Citrus sinensis
ATGAATAAGCAACTCAATAGCGCTACAAATTATGACACTGAGTCTGTAAC
TAGTATCAGCATGCATAGCGTAAGTTTTTGTAGCAGTAGTACTGTTTCTG
GGTCTGATACTAGTGTGAGTAGTAACTTGAGCAATGCCACTATTGAAGCC
AAAAAGGGTGTTGATTGTCTTGCTCATAGTGAAGAAGAGAGTGGAAAGAG
TAGTTTAAGTACTGGTGACGCAAATGAGGCTAGTTTTAGGAGTGCTTGCC
TTTCGAAACCTCACAAAGGCAATGACATGAAATGGGATGCAGTGCAATGT
GTGAAAAGTAAAGATGGGGACTTGGGGTTGGGACATTTTAGGCTTTTGAA
GAAACTTGGTTGTGGTGATATAGGGAGTGTATACTTGGCTGAATTGAGAG
ACATGGGTTGTTTGTTTGCTATGAAAGTGATGGATAAAGGTATGTTAGCT
GGGAGGAAGAAGTTGATGAGAGCACAAACTGAGAGAGAGATTTTAAGCTT
GTTGGATCATCCATTTTTGCCTACCCTGTACTCACATTTTGAGACTGACA
AGTTTTCTTGCTTGTTGATGGAGTTTTGTAGCGGTGGAGACCTTCATACT
CTCCGGCAGCGCCAGCCCGGCAAGCATTTTTCGGAACAAGCAACAAGGTT
TTATGCTTCTGAAGTGCTTCTTGCACTTGAGTATCTGCACATGATGGGTG
TGGTTTACAGGGATTTAAAGCCTGAAAACGTGTTGGTGAGGGAGGATGGT
CACATAATGCTCTCTGACTTTGATTTGTCATTAAGATGTTTTGTAAGTCC
TAAGCTTGTTCAGTCCAGCGATGACCCAGCTTGCAGAATATCTTCTTACT
GTATTCAGCCATCATGCATAGATCCAGCCTGCAAATTACCTGTTTGTGTG
GAGCCTTCTTGCTTACAACCATCTTGCTTTAAGCCTCGTTTCCTCAAGTC
CAAGACAACAAAGGTGAAAAGTGAAAAAACAAGTCTCACAAATTCGGATT
CTCTTCCCGTACTTATCGCAGAACCAACTAGTGCCCGCTCCATGTCATTT
GTTGGGACCCATGAATACTTAGCTCCTGAGATAATAAGAGGAGATGGCCA
TGGAAGTGCTGTTGATTGGTGGACATTTGGTATTTTCTTTTATGAATTAC
TGCTTGGAAGAACACCATTTAAAGGTAATGGAAACAGGGAGACATTATTC
AATGTCGTAGGTCAGCCCCTAAAATTTCCAGAGGGATCGTCAATCAGTTT
TGCTGCTAAGGATTTAATCCGGGGTCTCCTTGTTAAGGACCCACCAAAGA
GATTAGGGTTCAAAAGAGGTGCCACAGAGATTAAACAGCATCCTTTCTTT
GAAAGTGTTAACTGGGCATTGATTCGCAGCACTCACCCTCCAGAAATTCC
AAAACCGGTTGATCTCTCATTTATAAATCACAAACAGAGGACACCCATAC
CTCAAAATGACAAAGGAGCTACAGACTCGGATAGGTCTTCAGGCCCTTTC
TTAGATTTTGAATTTTTCTAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000719	Prot_kinase_dom
IPR008271	Ser/Thr_kinase_AS
IPR011009	Kinase-like_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0004672	protein kinase activity
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006468	protein phosphorylation