Transcript Overview
Name Cs6g21940.4
Unique Name Cs6g21940.4_Hzau_Valencia_v1.0
Type mRNA
Organism Citrus sinensis (Sweet orange)
Sequence length 1460
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Cs6g21940.4 Cs6g21940.4_Hzau_Valencia_v2.0-protein Citrus sinensis polypeptide
Cs6g21940.4_Hzau_Valencia_v1.0 Cs6g21940.4_Hzau_Valencia_v1.0 Citrus sinensis polypeptide
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g21940.4.utr5.1 Cs6g21940.4.utr5.1_Hzau_Valencia_v1.0 Citrus sinensis five_prime_UTR
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g21940.4.exon.1 Cs6g21940.4.exon.1_Hzau_Valencia_v1.0 Citrus sinensis exon
Cs6g21940.4.exon.2 Cs6g21940.4.exon.2_Hzau_Valencia_v1.0 Citrus sinensis exon
Cs6g21940.4.exon.3 Cs6g21940.4.exon.3_Hzau_Valencia_v1.0 Citrus sinensis exon
Cs6g21940.4.exon.4 Cs6g21940.4.exon.4_Hzau_Valencia_v1.0 Citrus sinensis exon
Cs6g21940.4.exon.5 Cs6g21940.4.exon.5_Hzau_Valencia_v1.0 Citrus sinensis exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g21940.4.cds.1 Cs6g21940.4.cds.1_Hzau_Valencia_v1.0 Citrus sinensis CDS
Cs6g21940.4.cds.2 Cs6g21940.4.cds.2_Hzau_Valencia_v1.0 Citrus sinensis CDS
Cs6g21940.4.cds.3 Cs6g21940.4.cds.3_Hzau_Valencia_v1.0 Citrus sinensis CDS
Cs6g21940.4.cds.4 Cs6g21940.4.cds.4_Hzau_Valencia_v1.0 Citrus sinensis CDS
Cs6g21940.4.cds.5 Cs6g21940.4.cds.5_Hzau_Valencia_v1.0 Citrus sinensis CDS
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g21940.4.utr3.1 Cs6g21940.4.utr3.1_Hzau_Valencia_v1.0 Citrus sinensis three_prime_UTR
Homology
BLAST of Cs6g21940.4 vs. DB:SwissProt
Match:
CM1_ARATH (Chorismate mutase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CM1 PE=1 SV=3)
HSP 1 Score: 374.785 bits (961), Expect = 3.051e-130
Identity = 178/255 (69.80%), Postives = 209/255 (81.96%), Query Frame = 1
Query: 1 MKLEGIRKSLIRQEDSIIFSLLERAQYCINADTYDPDAFTIDGQRCSLVEYILKETEKLHSKLGRYQSPDEHPFFPDQLPDPVLPPMQYPQVLHPIADSININIKVWNMYFRDLIPRLVEEGDDGNCGSAAVCDTMCLQTLSNRIHYGKFVAEAKFLADPDAYKAAIEAQDSNKLMEILTYPTVEEAVKQRVLMKARAYGQEV--------TPHDGNGADPVYKINPSLVADLYGDWIMPLTKEVQVAYLLRRLD 741
+ LEGIR SLIRQEDSIIF LLERA+YC NADTYDP AF +DG SLVEY++K TEKLH+K+GR++SPDEHPFFPD LP+P+LPP+QYP+VLH ADSININ K+WNMYFRDL+PRLV++GDDGN GS AVCD +CLQ LS RIHYGKFVAEAKF A P+AY++AI+AQD + LM++LT+PTVE+A+K+RV MK R YGQEV + VYKI+P LV DLYGDWIMPLTKEVQV YLLRRLD
Sbjct: 86 LTLEGIRNSLIRQEDSIIFGLLERAKYCYNADTYDPTAFDMDGFNGSLVEYMVKGTEKLHAKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAADSININKKIWNMYFRDLVPRLVKKGDDGNYGSTAVCDAICLQCLSKRIHYGKFVAEAKFQASPEAYESAIKAQDKDALMDMLTFPTVEDAIKKRVEMKTRTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYGDWIMPLTKEVQVEYLLRRLD 340
BLAST of Cs6g21940.4 vs. DB:SwissProt
Match:
CM3_ARATH (Chorismate mutase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CM3 PE=1 SV=1)
HSP 1 Score: 367.851 bits (943), Expect = 7.708e-128
Identity = 175/248 (70.56%), Postives = 210/248 (84.68%), Query Frame = 1
Query: 1 MKLEGIRKSLIRQEDSIIFSLLERAQYCINADTYDPDAFTIDGQRCSLVEYILKETEKLHSKLGRYQSPDEHPFFPDQLPDPVLPPMQYPQVLHPIADSININIKVWNMYFRDLIPRLVEEGDDGNCGSAAVCDTMCLQTLSNRIHYGKFVAEAKFLADPDAYKAAIEAQDSNKLMEILTYPTVEEAVKQRVLMKARAYGQEVTPHD-GNGADPVYKINPSLVADLYGDWIMPLTKEVQVAYLLRRLD 741
+KLE IR SLIRQEDSIIF+LLERAQY NADTYD DAFT++G + SLVE++++ETEKLH+K+ RY+SPDEHPFFP LP+P+LPP+QYPQVLH A+SININ KVWNMYF+ L+PRLV+ GDDGNCGSAA+CDTMCLQ LS RIH+GKFVAEAKF +P AY+ AI+ QD +LM++LTY TVEE VK+RV +KAR +GQ++T +D ADP YKI PSLVA LYG+ IMPLTKEVQ+ YLLRRLD
Sbjct: 69 LKLESIRHSLIRQEDSIIFNLLERAQYRYNADTYDEDAFTMEGFQGSLVEFMVRETEKLHAKVDRYKSPDEHPFFPQCLPEPILPPIQYPQVLHRCAESININKKVWNMYFKHLLPRLVKPGDDGNCGSAALCDTMCLQILSKRIHFGKFVAEAKFRENPAAYETAIKEQDRTQLMQLLTYETVEEVVKKRVEIKARIFGQDITINDPETEADPSYKIQPSLVAKLYGERIMPLTKEVQIEYLLRRLD 316
BLAST of Cs6g21940.4 vs. DB:SwissProt
Match:
CM2_ARATH (Chorismate mutase 2 OS=Arabidopsis thaliana OX=3702 GN=CM2 PE=1 SV=1)
HSP 1 Score: 259.996 bits (663), Expect = 3.944e-86
Identity = 124/249 (49.80%), Postives = 173/249 (69.48%), Query Frame = 1
Query: 1 MKLEGIRKSLIRQEDSIIFSLLERAQYCINADTYDPDAFTIDGQRCSLVEYILKETEKLHSKLGRYQSPDEHPFFPDQLPDPVLPPMQYPQVLHPIADSININIKVWNMYFRDLIPRLVEEGDDGNCGSAAVCDTMCLQTLSNRIHYGKFVAEAKFLADPDAYKAAIEAQDSNKLMEILTYPTVEEAVKQRVLMKARAYGQEVTPHDGNG--ADPVYKINPSLVADLYGDWIMPLTKEVQVAYLLRRLD 741
+ L+ IR+SLIRQED+I+FSL+ERA++ +N+ ++ G SL E+ ++ETE + +K+GRY+ P+E+PFF + +P V P +YP LHP A S+NIN ++W++YF++L+P V+ GDDGN S A D CLQ LS RIHYGKFVAE KF P Y+ AI AQD LM++LT+ VEE VK+RV KA +GQEV + G G + YK++P L + +YG+W++PLTK V+V YLLRRLD
Sbjct: 17 LSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFEESRCLDSGSFSSLTEFFVRETEIIQAKVGRYEYPEENPFFLENIPHSVFPTHKYPSALHPKALSVNINKQIWDIYFKELLPLFVKPGDDGNYPSTAASDLACLQALSRRIHYGKFVAEVKFRDAPQDYEPAIRAQDREALMKLLTFEKVEEMVKKRVQKKAETFGQEVKFNSGYGDESKKKYKVDPLLASRIYGEWLIPLTKLVEVEYLLRRLD 265
BLAST of Cs6g21940.4 vs. DB:SwissProt
Match:
CHMU_SCHPO (Probable chorismate mutase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC16E8.04c PE=3 SV=1)
HSP 1 Score: 194.126 bits (492), Expect = 1.877e-60
Identity = 106/250 (42.40%), Postives = 154/250 (61.60%), Query Frame = 1
Query: 1 MKLEGIRKSLIRQEDSIIFSLLERAQYCINADTYDPD---AFTIDGQRCSLVEYILKETEKLHSKLGRYQSPDEHPFFPDQLPDPVLPPMQYPQVLHPIADSININIKVWNMYFRDLIPRLVEEGDD-GNCGSAAVCDTMCLQTLSNRIHYGKFVAEAKFLADPDAYKAAIEAQDSNKLMEILTYPTVEEAVKQRVLMKARAYGQEVTPHDGNGADPVYKINPSLVADLYGDWIMPLTKEVQVAYLLRRL 738
+KLE IR +LIRQED+IIF+ LERAQ+ N Y ++ S + Y+L E EK+++ + RY SP+E+PF D LP+P+LP LHP +++N+N ++ Y +++P++ GDD N GS VCD CLQ+LS RIHYGKFVAEAK+LA+P+ YK I A+D + + EE V +R+ KA YG++ + P +IN VA +Y D+++P+TK+V+V YLL RL
Sbjct: 8 LKLENIRSALIRQEDTIIFNFLERAQFPRNEKVYKSGKEGCLNLENYDGSFLNYLLHEEEKVYALVRRYASPEEYPF-TDNLPEPILPKFSGKFPLHP--NNVNVNSEILEYYINEIVPKISSPGDDFDNYGSTVVCDIRCLQSLSRRIHYGKFVAEAKYLANPEKYKKLILARDIKGIENEIVDAAQEERVLKRLHYKALNYGRDA----ADPTKPSDRINADCVASIYKDYVIPMTKKVEVDYLLARL 250
BLAST of Cs6g21940.4 vs. DB:SwissProt
Match:
CHMU_YEAST (Chorismate mutase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ARO7 PE=1 SV=1)
HSP 1 Score: 190.66 bits (483), Expect = 4.449e-59
Identity = 100/251 (39.84%), Postives = 149/251 (59.36%), Query Frame = 1
Query: 1 MKLEGIRKSLIRQEDSIIFSLLERAQYCINADTYDPD--AFTIDGQRCSLVEYILKETEKLHSKLGRYQSPDEHPFFPDQLPDPVLPPMQYPQVLHPIADSININIKVWNMYFRDLIPRLVE-EGDD-GNCGSAAVCDTMCLQTLSNRIHYGKFVAEAKFLADPDAYKAAIEAQDSNKLMEILTYPTVEEAVKQRVLMKARAYGQEVTPHDGNGADPVYKINPSLVADLYGDWIMPLTKEVQVAYLLRRLD 741
+ L+ IR L+R EDSIIF +ER+ + Y+ + I + S +++ L E HS++ R++SPDE PFFPD++ LP + YPQ+L P A +N N K+ +Y +IP + + +GDD N GS A D CLQ+LS RIH+GKFVAEAKF +D Y I+++D +M+ +T VEE + +R+ KA YG + T G +I P + +Y + ++P+TKEV+V YLLRRL+
Sbjct: 10 LNLQNIRDELVRMEDSIIFKFIERSHFATCPSVYEANHPGLEIPNFKGSFLDWALSNLEIAHSRIRRFESPDETPFFPDKIQKSFLPSINYPQILAPYAPEVNYNDKIKKVYIEKIIPLISKRDGDDKNNFGSVATRDIECLQSLSRRIHFGKFVAEAKFQSDIPLYTKLIKSKDVEGIMKNITNSAVEEKILERLTKKAEVYGVDPTNESGER-----RITPEYLVKIYKEIVIPITKEVEVEYLLRRLE 255
The following BLAST results are available for this feature:
BLAST of Cs6g21940.4 vs. DB:SwissProt
Analysis Date: 2018-06-07 (
C. sinensis v2.0, HZAU CDS )
Total hits: 5
200 400 600 800 1000 1200 1400 Expect = 3.05e-130 / Id = 69.80 Expect = 7.71e-128 / Id = 70.56 Expect = 3.94e-86 / Id = 49.80 Expect = 1.88e-60 / Id = 42.40 Expect = 4.45e-59 / Id = 39.84 Sequence CM1_ARATH CM3_ARATH CM2_ARATH CHMU_SCHPO CHMU_YEAST
Match Name E-value Identity Description
CM1_ARATH 3.051e-130 69.80 Chorismate mutase 1, chloroplastic OS=Arabidopsis ... [more]
CM3_ARATH 7.708e-128 70.56 Chorismate mutase 3, chloroplastic OS=Arabidopsis ... [more]
CM2_ARATH 3.944e-86 49.80 Chorismate mutase 2 OS=Arabidopsis thaliana OX=370... [more]
CHMU_SCHPO 1.877e-60 42.40 Probable chorismate mutase OS=Schizosaccharomyces ... [more]
CHMU_YEAST 4.449e-59 39.84 Chorismate mutase OS=Saccharomyces cerevisiae (str... [more]
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InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21
200 400 600 800 1000 1200 1400 Expect = 1.5E-104 / Score = 347.0 Expect = 1.1E-116 / Score = 386.7 Score = Score = 90.016 Expect = 8.7E-109 / Score = 364.7 Score = Score = Sequence TIGR01802 PIRSF017318 PTHR21145 PS51169 G3DSA:1.10.590.10 PTHR21145:SF3 SSF48600
IPR Term IPR Description Source Source Term Source Description Alignment
IPR008238 Chorismate mutase, AroQ class, eukaryotic type TIGRFAM TIGR01802 TIGR01802 coord: 2..247 e-value: 1.5E-104 score: 347.0
IPR008238 Chorismate mutase, AroQ class, eukaryotic type PIRSF PIRSF017318 Chor_mut_AroQ_eu coord: 1..247 e-value: 1.1E-116 score: 386.7
IPR008238 Chorismate mutase, AroQ class, eukaryotic type PANTHER PTHR21145 CHORISMATE MUTASE coord: 2..247
IPR008238 Chorismate mutase, AroQ class, eukaryotic type PROSITE PS51169 CHORISMATE_MUT_3 coord: 1..247 score: 90.016
IPR037039 Chorismate mutase, AroQ class superfamily, eukaryotic GENE3D 1.10.590.10 coord: 1..247 e-value: 8.7E-109 score: 364.7
None No IPR available PANTHER PTHR21145:SF3 CHORISMATE MUTASE 3, CHLOROPLASTIC coord: 2..247
IPR036263 Chorismate mutase type II superfamily SUPERFAMILY 48600 Chorismate mutase II coord: 2..247
Sequences
The
following sequences are available for this feature:
mRNA sequence
>Cs6g21940.4_Hzau_Valencia_v1.0 ID=Cs6g21940.4_Hzau_Valencia_v1.0; Name=Cs6g21940.4; organism=Citrus sinensis; type=mRNA; length=1460bp CTTGTAAGACTTTGGGCATTTTAGCTTTCGAGTCACAGTAAGCGGAGTAT GTAATCGAGGCTTTTTGTCTGTGTAGGTCATCAAAAAGAAAGGGAAGGGT CGATGAAAGTGAAAACATGAAACTGGAGGGCATAAGAAAATCATTAATTC GACAAGAGGATAGCATAATATTTAGCCTTTTAGAGAGAGCTCAATATTGT ATTAATGCAGATACATATGATCCTGATGCTTTCACCATAGACGGACAACG TTGCTCATTGGTGGAGTACATACTTAAAGAAACTGAAAAACTTCACTCCA AGTTGGGCCGATACCAAAGCCCGGATGAGCATCCATTCTTTCCTGATCAA CTGCCTGACCCAGTGTTGCCACCTATGCAGTACCCACAGGTACTCCATCC CATAGCTGATTCAATCAATATAAATATTAAAGTTTGGAACATGTATTTCA GAGATCTCATCCCAAGATTAGTAGAGGAAGGAGATGATGGCAATTGTGGA TCAGCTGCTGTCTGCGATACAATGTGCTTGCAGACTTTGTCCAATAGAAT ACATTATGGTAAATTTGTAGCAGAAGCAAAATTTCTAGCAGATCCAGATG CATATAAAGCTGCCATTGAGGCACAGGACAGCAATAAGTTGATGGAAATT CTGACATACCCAACAGTAGAGGAGGCGGTCAAACAAAGAGTATTGATGAA AGCCAGAGCTTATGGCCAAGAAGTTACACCCCATGATGGAAACGGAGCTG ATCCCGTTTACAAAATAAACCCAAGCTTGGTGGCAGATCTGTATGGGGAC TGGATCATGCCATTAACAAAGGAAGTCCAAGTCGCTTACTTATTGAGAAG GTTGGATTGAATAGGTATAGAATCTCGCTCACCCTTTTATGTTAACATAC GTTAACAAATTTTATCTGAAACTCCAATTTGGATTTTGGTTTTTCTGCTG CTGAAGTTTGTAATTAAATAAGCTTGTGACAGGCCGCCCCTCACGGGCGT TTTTATAATTGTGAAAGTAGCAGTTATCCCATAACTAGATGATCTTGAGA TTTCATGAAATTGATGCTCTATATTTCTTGGTCGCTAGATCTGAGACTGC ATGTTACAGAGGTGAAAGGAGAGAGCCTTATACGAGAGCTAACACGGTGC TTACACGGTGCTTCAGTTGATGATTTGTGTGTACCATAGTTATGATTTAT CATGATGAATTTGGCCATTTCGGTCCTTACAAGGTTCCAAGGATGCAGAG GCAAGCCGTGGATCTTACCAATATCTTCAGCAGGCAAAATCGTATAAAAT TATTCCAATAATCATACATGTTAAATTTATACGTTAGTAATTTATTCTTG CTGTCAATTCATCATGATGTTTGGGCTTTTTTTTTTTTCACATGAAAAAC ACTATTTGATTTCAGGGCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG GTGTTTCCCA back to top protein sequence of Cs6g21940.4
>Cs6g21940.4_Hzau_Valencia_v2.0-protein ID=Cs6g21940.4_Hzau_Valencia_v2.0-protein; Name=Cs6g21940.4; organism=Citrus sinensis; type=polypeptide; length=248bp MKLEGIRKSLIRQEDSIIFSLLERAQYCINADTYDPDAFTIDGQRCSLVE YILKETEKLHSKLGRYQSPDEHPFFPDQLPDPVLPPMQYPQVLHPIADSI NINIKVWNMYFRDLIPRLVEEGDDGNCGSAAVCDTMCLQTLSNRIHYGKF VAEAKFLADPDAYKAAIEAQDSNKLMEILTYPTVEEAVKQRVLMKARAYG QEVTPHDGNGADPVYKINPSLVADLYGDWIMPLTKEVQVAYLLRRLD* back to top protein sequence of Cs6g21940.4_Hzau_Valencia_v1.0
>Cs6g21940.4_Hzau_Valencia_v1.0 ID=Cs6g21940.4_Hzau_Valencia_v1.0; Name=Cs6g21940.4_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=248bp MKLEGIRKSLIRQEDSIIFSLLERAQYCINADTYDPDAFTIDGQRCSLVE YILKETEKLHSKLGRYQSPDEHPFFPDQLPDPVLPPMQYPQVLHPIADSI NINIKVWNMYFRDLIPRLVEEGDDGNCGSAAVCDTMCLQTLSNRIHYGKF VAEAKFLADPDAYKAAIEAQDSNKLMEILTYPTVEEAVKQRVLMKARAYG QEVTPHDGNGADPVYKINPSLVADLYGDWIMPLTKEVQVAYLLRRLD* back to top mRNA from alignment at chr6:20877997..20880541+
Legend: five_prime_UTR exon polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=2545bp; location=Sequence derived from: chr6:20877997..20880541+ (Citrus sinensisCTTGTAAGACTTTGGGCATTTTAGCTTTCGAGTCACAGTAAGCGGAGTAT
GTAATCGAGGCTTTTTGTCTGTGTAGGTCATCAAAAAGAAAGGGAAGGGT
CGATGAAAGTGAAAAC ATGAAACTGGAGGGCATAAGAAAATCATTAATTC
GACAAGAGGATAGCATAATATTTAGCCTTTTAGAGAGAGCTCAATATTGT
ATTAATGCAGATACATATGATCCTGATGCTTTCACCATAGACGGACAACG
TTGCTCATTGGTGGAGTACATACTTAAAGAAACTGAAAAACTTCACTCCA
AG GTATTTAACAGTTTTCTTTTTTCCCTTTTTTTTATCCTACCCTTGTTG
TTAAGTTGATAAACCTGTTTAATATTAATGATTTATGCTGCAAATGGAGA
AAGGAAAAAGAGATTTATTTCATTTGAGTTCTAACCAAATTTATTTTCAT
ATTAGTTGGGCCGATACCAAAGCCCGGATGAGCATCCATTCTTTCCTGAT
CAACTGCCTGACCCAGTGTTGCCACCTATGCAGTACCCACAG GTAAATTT
GTAGAATGCATTGTAAAGTAATTTTTTTGTTTCTATCCCCTGATAGTTTT
AGTCCTCCTAGATCCTTGTTTGGAGATCAACCTCAGAGATCAATTCCCTG
ACATGTTTGTGCAGTAATTTTTTTGCTATGACTCTGAAATTCCAGTTAGC
TTTTTCAATTTAAATTCACAGCATGTAAGCATTGCCTCAACATGAATTTG
ATTAAAGAGTAGTTTACGAATTTGATTAAAGAGTAGTTTATCTTTACCCT
TATTTATCAATTGTTTTGGTCATATTTTTTTCTTGGTTCTGCTTCTGATT
TAAACCTTTTTTTTATAAACAATCGTCAGGTACTCCATCCCATAGCTGAT
TCAATCAATATAAATATTAAAGTTTGGAACATGTATTTCAGAGATCTCAT
CCCAAGATTAGTAGAGGAAGGAGATGATGGCAATTGTGGATCAGCTGCTG
TCTGCGATACAATGTGCTTGCAG GTATGTTTCTCAACTAATCTATTTATA
TTCATAGAAGATTTCATACAGTCAGATTACCAAATGGAGGCATTTGGATA
GCACTGACAAGGAACTGATATTTTTCATCAAAATTAAAGTTTCCTGAACT
GAGCTTTCTCAACTGCATATTCCAAGTGTCTGTATGTCACCATTGTGTAT
TGTGTTGAACATAAACTGCATTGTGGCTCATCGATCTCTCTTAGGATTTC
TGTTGCCTGTTTATGATATTGCCTCCTGCATCAGGCTTAAGTGTGACATA
TGTCACATACGTACTCCCTATCTATACCTGTCGACCAAAGTACTATAATA
TACCTGTGGTGCCAGGATGAAATATCCTGTGAGATCACTGCATCAATCTG
ATTAGTTTCATTTTGAAGGAGTGATTATATCTTGGCCAATTCACTTCTAA
TGAATGCTGAGCACTTCACATCTTCTTGTGATCGCAGACTTTGTCCAATA
GAATACATTATGGTAAATTTGTAGCAGAAGCAAAATTTCTAGCAGATCCA
GATGCATATAAAGCTGCCATTGAGGCACAG GTATAATTATAGTAATCCTT
TCTTCAGTTCATTCCAAACACACTTCTGCTTCATGGTCCCTGTAAAATTC
TTCGTCACTCCTCAAACTTGGATTTCATTGGCTAAATGATTTTCTCGGTG
AATTTTTCCAGGACAGCAATAAGTTGATGGAAATTCTGACATACCCAACA
GTAGAGGAGGCGGTCAAACAAAGAGTATTGATGAAAGCCAGAGCTTATGG
CCAAGAAGTTACACCCCATGATGGAAACGGAGCTGATCCCGTTTACAAAA
TAAACCCAAGCTTGGTGGCAGATCTGTATGGGGACTGGATCATGCCATTA
ACAAAGGAAGTCCAAGTCGCTTACTTATTGAGAAGGTTGGATTGA ATAGG
TATAGAATCTCGCTCACCCTTTTATGTTAACATACGTTAACAAATTTTAT
CTGAAACTCCAATTTGGATTTTGGTTTTTCTGCTGCTGAAGTTTGTAATT
AAATAAGCTTGTGACAGGCCGCCCCTCACGGGCGTTTTTATAATTGTGAA
AGTAGCAGTTATCCCATAACTAGATGATCTTGAGATTTCATGAAATTGAT
GCTCTATATTTCTTGGTCGCTAGATCTGAGACTGCATGTTACAGAGGTGA
AAGGAGAGAGCCTTATACGAGAGCTAACACGGTGCTTACACGGTGCTTCA
GTTGATGATTTGTGTGTACCATAGTTATGATTTATCATGATGAATTTGGC
CATTTCGGTCCTTACAAGGTTCCAAGGATGCAGAGGCAAGCCGTGGATCT
TACCAATATCTTCAGCAGGCAAAATCGTATAAAATTATTCCAATAATCAT
ACATGTTAAATTTATACGTTAGTAATTTATTCTTGCTGTCAATTCATCAT
GATGTTTGGGCTTTTTTTTTTTTCACATGAAAAACACTATTTGATTTCAG
GGCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGTTTCCCA back to top Coding sequence (CDS) from alignment at chr6:20877997..20880541+
>Cs6g21940.4_Hzau_Valencia_v1.0 ID=Cs6g21940.4_Hzau_Valencia_v1.0; Name=Cs6g21940.4; organism=Citrus sinensis; type=CDS; length=744bp; location=Sequence derived from: chr6:20877997..20880541+ (Citrus sinensis ATGAAACTGGAGGGCATAAGAAAATCATTAATTCGACAAGAGGATAGCAT AATATTTAGCCTTTTAGAGAGAGCTCAATATTGTATTAATGCAGATACAT ATGATCCTGATGCTTTCACCATAGACGGACAACGTTGCTCATTGGTGGAG TACATACTTAAAGAAACTGAAAAACTTCACTCCAAGTTGGGCCGATACCA AAGCCCGGATGAGCATCCATTCTTTCCTGATCAACTGCCTGACCCAGTGT TGCCACCTATGCAGTACCCACAGGTACTCCATCCCATAGCTGATTCAATC AATATAAATATTAAAGTTTGGAACATGTATTTCAGAGATCTCATCCCAAG ATTAGTAGAGGAAGGAGATGATGGCAATTGTGGATCAGCTGCTGTCTGCG ATACAATGTGCTTGCAGACTTTGTCCAATAGAATACATTATGGTAAATTT GTAGCAGAAGCAAAATTTCTAGCAGATCCAGATGCATATAAAGCTGCCAT TGAGGCACAGGACAGCAATAAGTTGATGGAAATTCTGACATACCCAACAG TAGAGGAGGCGGTCAAACAAAGAGTATTGATGAAAGCCAGAGCTTATGGC CAAGAAGTTACACCCCATGATGGAAACGGAGCTGATCCCGTTTACAAAAT AAACCCAAGCTTGGTGGCAGATCTGTATGGGGACTGGATCATGCCATTAA CAAAGGAAGTCCAAGTCGCTTACTTATTGAGAAGGTTGGATTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: Biological Process
Term Definition
GO:0009073 aromatic amino acid family biosynthetic process
GO:0046417 chorismate metabolic process
Vocabulary: Molecular Function
Term Definition
GO:0004106 chorismate mutase activity