Transcript Overview
Name Cs6g22210.2 Unique Name Cs6g22210.2_Hzau_Valencia_v1.0 Type mRNA Organism Citrus sinensis (Sweet orange) Sequence length 1412
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Cs6g22210.2 Cs6g22210.2_Hzau_Valencia_v2.0-protein Citrus sinensis polypeptide Cs6g22210.2_Hzau_Valencia_v1.0 Cs6g22210.2_Hzau_Valencia_v1.0 Citrus sinensis polypeptide
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g22210.2.utr3.1 Cs6g22210.2.utr3.1_Hzau_Valencia_v1.0 Citrus sinensis three_prime_UTR
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g22210.2.cds.3 Cs6g22210.2.cds.3_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g22210.2.cds.2 Cs6g22210.2.cds.2_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g22210.2.cds.1 Cs6g22210.2.cds.1_Hzau_Valencia_v1.0 Citrus sinensis CDS
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g22210.2.exon.3 Cs6g22210.2.exon.3_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g22210.2.exon.2 Cs6g22210.2.exon.2_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g22210.2.exon.1 Cs6g22210.2.exon.1_Hzau_Valencia_v1.0 Citrus sinensis exon
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g22210.2.utr5.1 Cs6g22210.2.utr5.1_Hzau_Valencia_v1.0 Citrus sinensis five_prime_UTR
Homology
BLAST of Cs6g22210.2 vs. DB:SwissProt
Match:
CRR7_ARATH (Protein CHLORORESPIRATORY REDUCTION 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR7 PE=2 SV=1)
HSP 1 Score: 137.887 bits (346), Expect = 4.891e-41
Identity = 78/163 (47.85%), Postives = 103/163 (63.19%), Query Frame = 1
Query: 19 LNDQLLGNRVESFDCKNAPTPRHNTRVQVCSLAETCSFSLNS----QLPK-------LTSRRKDAAAKICATRRRRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQWYEVRLE 474
L QL N + F + RHN RV + + T S S+NS P +TSR+ + +CATRRRR+ +S ++TYVLLE G +E+FVTE+ELKA+L+ WLENW LPPDLA+F +DEAV FL+ VCELE+ G+VGS+QWY+VRLE
Sbjct: 5 LQKQLFNNGDKLF------SSRHNRRVSIEQVHVTDSLSVNSINLFHKPICYPISSIITSRKSKSHFSVCATRRRRV-HSNSDTYVLLEAGQDEQFVTEDELKAKLRGWLENWP----VNSLPPDLARFDDLDEAVDFLVKAVCELEIDGEVGSVQWYQVRLE 156
The following BLAST results are available for this feature:
BLAST of Cs6g22210.2 vs. DB:SwissProt
Analysis Date: 2018-06-07 (
C. sinensis v2.0, HZAU CDS )
Total hits: 1
200 400 600 800 1000 1200 1400 Expect = 4.89e-41 / Id = 47.85 Sequence CRR7_ARATH
Match Name E-value Identity Description
CRR7_ARATH 4.891e-41 47.85 Protein CHLORORESPIRATORY REDUCTION 7, chloroplast... [more]
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InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21
200 400 600 800 1000 1200 1400 Expect = 4.0E-25 / Score = 89.9 Expect = 7.5E-24 / Score = 83.9 Score = Score = Sequence G3DSA:3.90.940.40 PF12095 PTHR36803 PTHR36803:SF1
IPR Term IPR Description Source Source Term Source Description Alignment
IPR038150 Protein CHLORORESPIRATORY REDUCTION 7-like superfamily GENE3D 3.90.940.40 coord: 79..155 IPR021954 Protein CHLORORESPIRATORY REDUCTION 7 PFAM PF12095 CRR7 coord: 75..158 IPR021954 Protein CHLORORESPIRATORY REDUCTION 7 PANTHER PTHR36803 FAMILY NOT NAMED coord: 7..158 None No IPR available PANTHER PTHR36803:SF1 PROTEIN CHLORORESPIRATORY REDUCTION 7, CHLOROPLASTIC coord: 7..158
Sequences
The
following sequences are available for this feature:
mRNA sequence
>Cs6g22210.2_Hzau_Valencia_v1.0 ID=Cs6g22210.2_Hzau_Valencia_v1.0; Name=Cs6g22210.2; organism=Citrus sinensis; type=mRNA; length=1412bp back to top protein sequence of Cs6g22210.2
>Cs6g22210.2_Hzau_Valencia_v2.0-protein ID=Cs6g22210.2_Hzau_Valencia_v2.0-protein; Name=Cs6g22210.2; organism=Citrus sinensis; type=polypeptide; length=159bp back to top protein sequence of Cs6g22210.2_Hzau_Valencia_v1.0
>Cs6g22210.2_Hzau_Valencia_v1.0 ID=Cs6g22210.2_Hzau_Valencia_v1.0; Name=Cs6g22210.2_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=159bp back to top mRNA from alignment at chr6:21042063..21044215-
Legend: exon five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=2153bp; location=Sequence derived from: chr6:21042063..21044215- (Citrus sinensisGTATCAGTTGGTCCATAAAAAATTAAATGCTATCTGAGGGTTTCAGGCTG
CAAAACTGCTTCA ATGGAGGGAGTTTTAATCTTAAATGACCAGCTACTCG
GCAATAGAGTTGAGAGTTTTGACT GTAAAAATGCTCCAACTCCGAGGCATAATACTCGAGTT
CAAGTATGTTCACTTGCTGAGACTTGCAGCTTTTCTTTAAACTCCCAATT
GCCTAAGTTGACAAGCCGGAGAAAAGATGCAGCAGCTAAG ATTTGTG
CAACAAGGAGGAGGAGAATGGCGTATTCGAGGACGGAAACGTATGTGCTA
TTAGAACCAGGAGTAGAGGAGAAATTTGTTACAGAAGAAGAGCTAAAAGC
CAGGTTGAAATATTGGCTTGAAAATTGGGCAGGCCAAGTTGGGAAGGGTG
GTTTGCCTCCTGACCTTGCAAAATTTGCAACCATTGATGAAGCTGTTGCT
TTCCTAATAACTAACGTCTGCGAACTTGAACTCCAGGGCGATGTGGGTTC
AATCCAGTGGTATGAAGTTCGCTTGGAGTGA TGTACTACTGATCATCAGC
ATCATCAGTATTGTATTAATAGAGATTCAAGTTCAACCCACGCATTGGTA
ACTTATTAGCACAAGCTAGCGCATGAATAGATTGATGAACAACAATCACA
ATAATTAGTAATTTTATTACAGAACAACTGATGATGATGAATTATGCAGC
AAGTAACCTGGAGAGGGAGAGCAAATTATTAATTTCACACACGCACACAC
ACACGCACACAAAAAGAGCTGGCAGACAAATTCATCTCATCATCAGGTTC
AAGAATCCGATCGTCCATCAGCATCAAGGAAACAATAACACCACAGAGGT
TGATCAGTTGTGAAGCAAGCCCACATTCTGAACAAGCAATTCTTGAATCT
GCTGGTGGTTGATGGTAGGTGGGAGGAGAAGGGCAGGTCCCTTTCTGTGT
CTAGCAAGCAATCCTTTAGTAACAGGTGACATCATTGAATCAGTTGGGCT
CCTGTACCTTTCACTTTCAGGGTACTTGAATGCTTTAGGCACTTTAAGCC
GATCTGGGGTGTTAGTTTTTCTCGATTCTTGAGGCTGAGGATGCGTTTTC
GTTTTGTACTCCTCCGTTGCCATAATAAGCTGGCAGCTGCTGCGTGATGA
TTCAGGTTCAGGCGCGGGACAGCTCTTCTTCAATGCAAGCGTTTCAATCG
CGTTCTCCATTGTTAATTCCCTTGTTTATGTTTAATTAAAGAGAAATATT
GGAAGGAAGAAGAAGCAGATACACAGAGAGAGCACTAGCAGGCTAGCAGC
GGTTGTACATTTAATTTTCAAGACACTTGTTTTATTTCAGGACTTTGGAC
TAGCAACGGTCGAATTTTTTCACTTGCTGCCCGTTGGGAGTTCAAAATTT
CAC back to top Coding sequence (CDS) from alignment at chr6:21042063..21044215-
>Cs6g22210.2_Hzau_Valencia_v1.0 ID=Cs6g22210.2_Hzau_Valencia_v1.0; Name=Cs6g22210.2; organism=Citrus sinensis; type=CDS; length=477bp; location=Sequence derived from: chr6:21042063..21044215- (Citrus sinensis back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
