Citrus clementina Unigene version 1.0 (Ccv1)

Analysis NameCitrus clementina Unigene version 1.0 (Ccv1)
Methodcap3 (cap3)
Date performed2010-06-22

This Unigene was constructed from 117,758 ESTs obtained from Genbank. The bioinformatic methods used to produce this Unigene can be found here. Additional analysis for these contigs included BLAST searches against multiple protein databases to predict function, and identification of potential SSRs and SNPs.

Additional information about this analysis:
Property NameValue
Analysis unigene num contigs15,548
Analysis unigene num reads117,758
Analysis unigene avg length
Analysis unigene num clusters
Analysis unigene num singlets
Analysis unigene nameCitrus clementina Unigene version 1.0 (Ccv1)
Analysis Typetripal_analysis_unigene
Orignal EST sequences from NCBI (118,365 seqs) citrus_clementina_ESTs_053010.fasta
Filtered and trimmed EST sequences (117,758 sequences) Ccv1.trimmedESTs.fasta
Contigs from CAP3 assembly (15,548 contig sequences) Ccv1.cap.contigs
Ace file from CAP3 assembly Ccv1.cap.ace
BLAST of contigs to TAIR9 Arabidopsis proteins Ccv1_blastx_TAIR9.xls
BLAST of contigs to SwissProt proteins Ccv1_blastx_sprot.xls
SSRs found in contigs (with primer predictions) Ccv1_ssrReport.xls
SNPs predicted from contigs (with primer predictions) Ccv1_snpReport.xls