Citrus sinensis Unigene version 1.0 (Csv1)

Analysis NameCitrus sinensis Unigene version 1.0 (Csv1)
Methodcap3 (cap3)
Date performed2010-06-22

This Unigene was constructed from 206,813 ESTs obtained from Genbank. The bioinformatic methods used to produce this Unigene can be found here. Additional analysis for these contigs included BLAST searches against multiple protein databases to predict function, and identification of potential SSRs and SNPs.

Additional information about this analysis:
Property NameValue
Analysis unigene nameCitrus sinensis Unigene version 1.0 (Csv1)
Analysis unigene num contigs13,856
Analysis unigene num reads206,813
Analysis unigene avg length
Analysis unigene num clusters
Analysis unigene num singlets
Analysis Typetripal_analysis_unigene
Orignal EST sequences from NCBI (208,909 seqs) citrus_sinensis_ESTs_053010.fasta
Filtered and trimmed EST sequences (206,813 sequences) Csv1.trimmedESTs.fasta
Contigs from CAP3 assembly (13,856 contig sequences) Csv1.cap.contigs
Ace file from CAP3 assembly Csv1.cap.ace
BLAST of contigs to TAIR9 Arabidopsis proteins Csv1_blastx_TAIR9.xls
BLAST of contigs to SwissProt proteins Csv1_blastx_sprot.xls
SSRs found in contigs (with primer predictions) Csv1_ssrReport.xls
SNPs predicted from contigs (with primer predictions) Csv1_snpReport.xls