Citropsis gilletiana cv. CGI genome v1.0

Overview
Analysis NameCitropsis gilletiana cv. CGI genome v1.0
MethodNanopore, PacBio (Assembly with SMARTdenovo, miniasm)
SourceHuazhong Agriculture University
Date performed2024-01-22

 

About the assembly

For this genome, please cite Huang et al, Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits.  This data was originally downloaded from the Citrus Pan-genome to Breeding Database.  This data is also on NCBI under BioProject PRJNA782478 and the assembly accession number is GCA_030449925.1.  The listed BioSample isolate designation is CGI.

Assembly metrics

Assembly size 419 Mb
Number of scaffolds 259
N50 5,249,098 bp
Predicted transcripts 44,060
Annotated genes 28,225
Assembly BUSCO score (embryophyta_odb10) 98.2%
Annotation BUSCO score (embryophyta_odb10) 95.0%