EH406224

Overview
NameEH406224
Unique NameEH406224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EH406224_ssr510 microsatellite EH406224_ssr510:510..521. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10044 contig Ccv1_Contig10044:8..580. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PPR95_ARATH (Pentatricopeptide repeat-containing protein At1g62915, mitochondrial OS=Arabidopsis thaliana GN=At1g62915 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.956e-13
Identity = 42/134 (31.34%), Postives = 74/134 (55.22%), Query Frame = 3
Query:    9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 410
            ++D+M + G  P++ T+  ++H L    +  EA ++  RM ++ G +P + TY  VV   C     D+A+ + ++M+A  +   + +YST+I+SLC     DDA   F EM + G+RP    +S+L   L + G
Sbjct:  170 LVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQR-GCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYG 302          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP213_ARATH (Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.956e-13
Identity = 44/147 (29.93%), Postives = 76/147 (51.70%), Query Frame = 3
Query:    6 RMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 446
            R++D MR     P++ TY+I++  L   G+ + A  V  ++      +PTV TY I++        VD A+++ DEM +RG+ P M  Y+T+I  +C E  +D A +  + +   G  P    ++ L +AL ++G  E    L  K+
Sbjct:  179 RVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLL-SDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM 324          

HSP 2 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 39/135 (28.89%), Postives = 71/135 (52.59%), Query Frame = 3
Query:    6 RMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 410
            ++M +M      PN  TY I++  L + G+ EEA ++ K M  K G  P   +Y+ ++  FC   ++D+A+   + M + G LP +  Y+T++ +LC   K D A + F ++ ++G  P    ++ +  AL   G
Sbjct:  319 KLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEK-GLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSG 452          

HSP 3 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 39/155 (25.16%), Postives = 78/155 (50.32%), Query Frame = 3
Query:    3 YRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 467
            + M+  +   G  P+  +Y+I+L  L+  G+ EE   +  +M  +   +P V TY I++   C + +++ AM +   MK +G+ P  + Y  LI + C E +LD A ++ + M+  G  P    ++ +   L   G  + A+ +  K+ ++  +P
Sbjct:  283 FEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK-CDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSP 436          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP149_ARATH (Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.956e-13
Identity = 43/153 (28.10%), Postives = 79/153 (51.63%), Query Frame = 3
Query:    9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 467
            ++D+M + GI P + T+++++    KAG    A  +  +M    G  P V T+  ++  +C   QV    R+W+EM ARG+ P    YS LIN+LC+E++L  A +   ++    I P   +++ +       G    A V+ ++++K +  P
Sbjct:  299 LLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISF-GCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKP 450          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: RF1_ORYSI (Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 44/146 (30.14%), Postives = 74/146 (50.68%), Query Frame = 3
Query:    9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 446
            +++ M K G+ P+  TY+ +LH    +G+ +EA    K+M R  G EP V TY +++   C N +   A +I+D M  RG+ P +  Y TL+     +  L +       M+  GI P   +FS L  A   +G  + A+++  K+
Sbjct:  253 VLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM-RSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKM 397          

HSP 2 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 40/164 (24.39%), Postives = 77/164 (46.95%), Query Frame = 3
Query:   12 MDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTY-----------------------------------EIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQAL 398
            + +MR  G+ P+  TY +++ +L K GR  EA  +F  M+++ G +P ++TY                                    I++  +    +VD AM ++ +M+ +G+ P    Y  +I  LC   +++DA  YF++M+D G+ P   ++++L   L
Sbjct:  289 LKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKR-GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGL 451          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PPR92_ARATH (Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 43/148 (29.05%), Postives = 75/148 (50.68%), Query Frame = 3
Query:    6 RMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKID 449
            R++ +M K  I PN  TY  +L   +K G+  EA  +F+ M R    +P + TY  ++   C + ++D A +++D M ++G L  +  Y+TLIN  C   +++D  K F+EM   G+      ++ L Q     G  + A     ++D
Sbjct:  246 RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRM-SIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMD 392          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PPR78_ARATH (Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 44/151 (29.14%), Postives = 75/151 (49.67%), Query Frame = 3
Query:    3 YRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHED-KLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 452
            Y ++DEM + G  P++ TY+ ++ +         A  +  RM R     P   TY +V+++     + D A  IW+ M  R   P +  Y+ +I+ L  +  KL++AC+YF+ M+D GI P       L+  L   G  +   VLA K+++
Sbjct:  333 YLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCL-PDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLRNRLVGWGQMDVVDVLAGKMER 482          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP375_ARATH (Pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 41/150 (27.33%), Postives = 79/150 (52.67%), Query Frame = 3
Query:    6 RMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKL 455
            +++  M   G+ P + TY+    +  K  +TEE  +++ ++  + G  P   TY ++++M C + ++ +AM++  EMK RG+ P +   + LI+ LC  + L++A + F   +  GI P    F  +   LR +GM + A  L+  +  L
Sbjct:  376 KILKMMMTRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLI-EAGHSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKMIDNGLRSKGMSDMAKRLSSLMSSL 524          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP158_ARATH (Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 40/131 (30.53%), Postives = 72/131 (54.96%), Query Frame = 3
Query:   18 EMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 410
            +M  CGI P + T+++++  L  +   + A  +F  M  K G +P   T+ I+VR +C     D  + + + M++ GVLP   +Y+T+++S C E + DD+ K  ++M + G+ P    F++   AL  EG
Sbjct:  137 DMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEK-GCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEG 266          

HSP 2 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 40/126 (31.75%), Postives = 62/126 (49.21%), Query Frame = 3
Query:   18 EMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 395
            EM    + P+S  Y+I +HH  K G+   A+ V K M +K G   ++ TY  ++       Q+     + DEMK +G+ P +  Y+T I  LC  +K++DA     EM+   I P    F  L +A
Sbjct:  549 EMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKK-GCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEA 673          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP389_ARATH (Pentatricopeptide repeat-containing protein At5g16640, mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12
Identity = 45/146 (30.82%), Postives = 76/146 (52.05%), Query Frame = 3
Query:   15 DEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 452
            +EM +  + P+  TY ++++ L    R +EA  +F  M  K G  P V TY I++  +C + +V+  M+++ EM  RGV+     Y+ LI   C   KL+ A + F+ M+  G+ P    ++ L   L D G  E A+V+   + K
Sbjct:  280 EEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSK-GCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQK 424          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP150_ARATH (Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12
Identity = 41/149 (27.52%), Postives = 76/149 (51.01%), Query Frame = 3
Query:    9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGT-EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 452
            +++ M + GI P+S TY+              A +++++M  K G  +P+  TY +++  F    +++    IWD++KA    P +  Y++L++ LC ++K  +AC YF EM++ G  P    F  L + L       T   L +K+D+
Sbjct:  344 LLETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKM--KNGLCKPSTQTYNVLLGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVEMIERGFLPQKLTFETLYKGLIQSNKMRTWRRLKKKLDE 490          
The following BLAST results are available for this feature:
BLAST of EH406224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
PPR95_ARATH7.956e-1331.34Pentatricopeptide repeat-containing protein At1g62... [more]
PP213_ARATH7.956e-1329.93Pentatricopeptide repeat-containing protein At3g04... [more]
PP149_ARATH7.956e-1328.10Pentatricopeptide repeat-containing protein At2g06... [more]
RF1_ORYSI1.357e-1230.14Protein Rf1, mitochondrial OS=Oryza sativa subsp. ... [more]
PPR92_ARATH1.357e-1229.05Pentatricopeptide repeat-containing protein At1g62... [more]
PPR78_ARATH1.357e-1229.14Pentatricopeptide repeat-containing protein At1g52... [more]
PP375_ARATH1.357e-1227.33Pentatricopeptide repeat-containing protein At5g11... [more]
PP158_ARATH1.357e-1230.53Pentatricopeptide repeat-containing protein At2g17... [more]
PP389_ARATH1.772e-1230.82Pentatricopeptide repeat-containing protein At5g16... [more]
PP150_ARATH1.772e-1227.52Pentatricopeptide repeat-containing protein At2g13... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DE04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406224 ID=EH406224; Name=EH406224; organism=Citrus clementina; type=EST; length=573bp
CATATAGGATGATGGATGAGATGAGGAAGTGTGGCATTGGTCCAAATTCT
CGAACTTATGATATAGTTCTTCATCACCTAATAAAGGCTGGAAGAACAGA
AGAGGCTTATTCGGTTTTTAAGAGAATGAGTCGCAAGCCAGGGACTGAGC
CAACTGTCAGTACCTATGAGATTGTAGTCAGGATGTTTTGCTACAACGCC
CAAGTAGATATGGCGATGAGGATTTGGGATGAGATGAAGGCAAGGGGAGT
TCTTCCTGTAATGCACATGTACTCGACATTGATTAATAGCTTGTGCCATG
AGGACAAGCTAGATGATGCTTGCAAGTACTTTCAAGAGATGCTGGATATT
GGTATTCGACCTCCTGGGCAGTTGTTTAGTAATCTAAAACAAGCTCTTCG
AGATGAGGGAATGGAGGAAACTGCTGTTGTTTTGGCTCAGAAGATTGACA
AATTGAGGAAAACTCCATTAGTTGATAGAGGTCAATGATAGGAGAGACTC
TAAAGCCCCTTTATTTATTTATTTTATGAATTAGCTCCAGAACAAGCTTT
CAATGAACAGAGAGAAGTTCTGA
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