EH406224
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PPR95_ARATH (Pentatricopeptide repeat-containing protein At1g62915, mitochondrial OS=Arabidopsis thaliana GN=At1g62915 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 7.956e-13 Identity = 42/134 (31.34%), Postives = 74/134 (55.22%), Query Frame = 3 Query: 9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 410 ++D+M + G P++ T+ ++H L + EA ++ RM ++ G +P + TY VV C D+A+ + ++M+A + + +YST+I+SLC DDA F EM + G+RP +S+L L + G Sbjct: 170 LVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQR-GCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYG 302
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP213_ARATH (Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 7.956e-13 Identity = 44/147 (29.93%), Postives = 76/147 (51.70%), Query Frame = 3 Query: 6 RMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 446 R++D MR P++ TY+I++ L G+ + A V ++ +PTV TY I++ VD A+++ DEM +RG+ P M Y+T+I +C E +D A + + + G P ++ L +AL ++G E L K+ Sbjct: 179 RVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLL-SDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM 324 HSP 2 Score: 71.2478 bits (173), Expect = 3.949e-12 Identity = 39/135 (28.89%), Postives = 71/135 (52.59%), Query Frame = 3 Query: 6 RMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 410 ++M +M PN TY I++ L + G+ EEA ++ K M K G P +Y+ ++ FC ++D+A+ + M + G LP + Y+T++ +LC K D A + F ++ ++G P ++ + AL G Sbjct: 319 KLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEK-GLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSG 452 HSP 3 Score: 69.707 bits (169), Expect = 1.149e-11 Identity = 39/155 (25.16%), Postives = 78/155 (50.32%), Query Frame = 3 Query: 3 YRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 467 + M+ + G P+ +Y+I+L L+ G+ EE + +M + +P V TY I++ C + +++ AM + MK +G+ P + Y LI + C E +LD A ++ + M+ G P ++ + L G + A+ + K+ ++ +P Sbjct: 283 FEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK-CDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSP 436
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP149_ARATH (Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 7.956e-13 Identity = 43/153 (28.10%), Postives = 79/153 (51.63%), Query Frame = 3 Query: 9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 467 ++D+M + GI P + T+++++ KAG A + +M G P V T+ ++ +C QV R+W+EM ARG+ P YS LIN+LC+E++L A + ++ I P +++ + G A V+ ++++K + P Sbjct: 299 LLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISF-GCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKP 450
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: RF1_ORYSI (Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12 Identity = 44/146 (30.14%), Postives = 74/146 (50.68%), Query Frame = 3 Query: 9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 446 +++ M K G+ P+ TY+ +LH +G+ +EA K+M R G EP V TY +++ C N + A +I+D M RG+ P + Y TL+ + L + M+ GI P +FS L A +G + A+++ K+ Sbjct: 253 VLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM-RSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKM 397 HSP 2 Score: 67.3958 bits (163), Expect = 5.702e-11 Identity = 40/164 (24.39%), Postives = 77/164 (46.95%), Query Frame = 3 Query: 12 MDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTY-----------------------------------EIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQAL 398 + +MR G+ P+ TY +++ +L K GR EA +F M+++ G +P ++TY I++ + +VD AM ++ +M+ +G+ P Y +I LC +++DA YF++M+D G+ P ++++L L Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKR-GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGL 451
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PPR92_ARATH (Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12 Identity = 43/148 (29.05%), Postives = 75/148 (50.68%), Query Frame = 3 Query: 6 RMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKID 449 R++ +M K I PN TY +L +K G+ EA +F+ M R +P + TY ++ C + ++D A +++D M ++G L + Y+TLIN C +++D K F+EM G+ ++ L Q G + A ++D Sbjct: 246 RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRM-SIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMD 392
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PPR78_ARATH (Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12 Identity = 44/151 (29.14%), Postives = 75/151 (49.67%), Query Frame = 3 Query: 3 YRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHED-KLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 452 Y ++DEM + G P++ TY+ ++ + A + RM R P TY +V+++ + D A IW+ M R P + Y+ +I+ L + KL++AC+YF+ M+D GI P L+ L G + VLA K+++ Sbjct: 333 YLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCL-PDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLRNRLVGWGQMDVVDVLAGKMER 482
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP375_ARATH (Pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12 Identity = 41/150 (27.33%), Postives = 79/150 (52.67%), Query Frame = 3 Query: 6 RMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKL 455 +++ M G+ P + TY+ + K +TEE +++ ++ + G P TY ++++M C + ++ +AM++ EMK RG+ P + + LI+ LC + L++A + F + GI P F + LR +GM + A L+ + L Sbjct: 376 KILKMMMTRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLI-EAGHSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKMIDNGLRSKGMSDMAKRLSSLMSSL 524
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP158_ARATH (Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12 Identity = 40/131 (30.53%), Postives = 72/131 (54.96%), Query Frame = 3 Query: 18 EMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 410 +M CGI P + T+++++ L + + A +F M K G +P T+ I+VR +C D + + + M++ GVLP +Y+T+++S C E + DD+ K ++M + G+ P F++ AL EG Sbjct: 137 DMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEK-GCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEG 266 HSP 2 Score: 67.3958 bits (163), Expect = 5.702e-11 Identity = 40/126 (31.75%), Postives = 62/126 (49.21%), Query Frame = 3 Query: 18 EMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 395 EM + P+S Y+I +HH K G+ A+ V K M +K G ++ TY ++ Q+ + DEMK +G+ P + Y+T I LC +K++DA EM+ I P F L +A Sbjct: 549 EMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKK-GCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEA 673
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP389_ARATH (Pentatricopeptide repeat-containing protein At5g16640, mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12 Identity = 45/146 (30.82%), Postives = 76/146 (52.05%), Query Frame = 3 Query: 15 DEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 452 +EM + + P+ TY ++++ L R +EA +F M K G P V TY I++ +C + +V+ M+++ EM RGV+ Y+ LI C KL+ A + F+ M+ G+ P ++ L L D G E A+V+ + K Sbjct: 280 EEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSK-GCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQK 424
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP150_ARATH (Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12 Identity = 41/149 (27.52%), Postives = 76/149 (51.01%), Query Frame = 3 Query: 9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGT-EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 452 +++ M + GI P+S TY+ A +++++M K G +P+ TY +++ F +++ IWD++KA P + Y++L++ LC ++K +AC YF EM++ G P F L + L T L +K+D+ Sbjct: 344 LLETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKM--KNGLCKPSTQTYNVLLGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVEMIERGFLPQKLTFETLYKGLIQSNKMRTWRRLKKKLDE 490 The following BLAST results are available for this feature:
BLAST of EH406224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >EH406224 ID=EH406224; Name=EH406224; organism=Citrus clementina; type=EST; length=573bpback to top |