EH406224
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP112_ARATH (Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 9.290e-54 Identity = 98/157 (62.42%), Postives = 126/157 (80.25%), Query Frame = 3 Query: 3 YRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTPLV 473 Y+ +DEMR G+GPN+RTYDI+LHHLI+ R++EAY V++ MS EPTVSTYEI+VRMFC ++DMA++IWDEMK +GVLP MHM+S+LI +LCHE+KLD+AC+YF EMLD+GIRPPG +FS LKQ L DEG ++ L K+D+LRKT LV Sbjct: 357 YKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMS----CEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVKMDRLRKTQLV 509
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP129_ARATH (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2) HSP 1 Score: 132.109 bits (331), Expect = 1.885e-30 Identity = 63/158 (39.87%), Postives = 97/158 (61.39%), Query Frame = 3 Query: 3 YRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTPLVD 476 YR++ EM+ G+ PNS++ +I+L HLI+ G +EA+ VF++M + EP TY +V++MFC +++ A ++W M+ +GV P MH +S LIN LC E AC +EM+++GIRP G F L+Q L E E+ L +K++ L PL D Sbjct: 362 YRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKV--CEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLIKEEREDVLKFLNEKMNVLVNEPLCD 517
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PPR39_ARATH (Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.549e-16 Identity = 49/149 (32.89%), Postives = 79/149 (53.02%), Query Frame = 3 Query: 6 RMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 452 +++ EM + GI PN+ TY+ ++ K R EEA + M K G +P + T+ I++ +C ++D + ++ EM RGV+ Y+TL+ C KL+ A K FQEM+ +RP + L L D G E A+ + KI+K Sbjct: 354 QLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISK-GCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEK 501 HSP 2 Score: 70.8626 bits (172), Expect = 5.157e-12 Identity = 42/154 (27.27%), Postives = 78/154 (50.65%), Query Frame = 3 Query: 6 RMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 467 +++ +M K I PN T+ +++ +K G+ EA + K M ++ G P TY ++ FC +++ A+++ D M ++G P + ++ LIN C +++DD + F+EM G+ ++ L Q G E A L Q++ R P Sbjct: 319 KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQR-GIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRP 471
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP247_ARATH (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 3.451e-16 Identity = 49/152 (32.24%), Postives = 80/152 (52.63%), Query Frame = 3 Query: 9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKT 464 + +EM GI P++ TY+ ++ K EA +F M K G EP + TY I++ +C +VD MR++ E+ ++G++P Y+TL+ C KL+ A + FQEM+ G+ P + L L D G A+ + +K+ K R T Sbjct: 337 LYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSK-GCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT 487 HSP 2 Score: 75.485 bits (184), Expect = 2.094e-13 Identity = 43/134 (32.09%), Postives = 71/134 (52.99%), Query Frame = 3 Query: 9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 410 ++D M + G P+ TY VL+ L K+G + A +F++M + + +V Y IV+ C + D A+ +++EM+ +G+ + YS+LI LC++ K DD K +EM+ I P FS L EG Sbjct: 197 LIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEER-NIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEG 329 HSP 3 Score: 68.5514 bits (166), Expect = 2.559e-11 Identity = 40/154 (25.97%), Postives = 84/154 (54.55%), Query Frame = 3 Query: 6 RMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 467 R+ E+ G+ PN+ TY+ ++ ++G+ A +F+ M + G P+V TY I++ C N +++ A+ I+++M+ + + +Y+ +I+ +C+ K+DDA F + D G++P ++ + L +G A +L +K+ + TP Sbjct: 406 RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR-GVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTP 558
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP407_ARATH (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.004e-15 Identity = 48/144 (33.33%), Postives = 77/144 (53.47%), Query Frame = 3 Query: 3 YRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVL 434 YR++ EM G P+ TY+ +++ G+ E+A +V + M K G P V +Y V+ FC + VD A+R+ EM +G+ P YS+LI C + + +AC ++EML +G+ P ++ L A EG E A+ L Sbjct: 400 YRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEK-GLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQL 542 HSP 2 Score: 80.4925 bits (197), Expect = 6.508e-15 Identity = 43/152 (28.29%), Postives = 84/152 (55.26%), Query Frame = 3 Query: 12 MDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 467 +D+MR G+ PN RTY ++ + G EAY V + M+ G P+V TY ++ C +++ A+ + ++MK +G+ P + YST+++ C +D+A + +EM++ GI+P +S+L Q ++ + A L +++ ++ P Sbjct: 368 LDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDN-GFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPP 518 HSP 3 Score: 72.4034 bits (176), Expect = 1.772e-12 Identity = 46/138 (33.33%), Postives = 74/138 (53.62%), Query Frame = 3 Query: 33 GIGPNSRTYDIVLHHLIKAGRTEE-AYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG-MEETAVVLAQ 440 G P +Y+ VL I++ R A +VFK M P V TY I++R FC+ +D+A+ ++D+M+ +G LP + Y+TLI+ C K+DD K + M G+ P ++ + L EG M+E + VL + Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQ-VSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTE 300
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP275_ARATH (Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15 Identity = 46/141 (32.62%), Postives = 79/141 (56.03%), Query Frame = 3 Query: 3 YRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP---GQLFSNLKQALRDEGME 416 Y ++D+MRK G+ P+ TY ++ K + EE + ++M R+ G P + Y +V+R+ C +V A+R+W+EM+A G+ P + + +IN + L +AC +F+EM+ GI G L S L +RD+ +E Sbjct: 362 YSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRR-GCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLE 501
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP418_ARATH (Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15 Identity = 49/144 (34.03%), Postives = 77/144 (53.47%), Query Frame = 3 Query: 18 EMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKID 449 EM K G P+S TY ++ L + GR +EA +F M K PTV TY ++ C + VD AMR +EMK++G+ P + YS+L++ LC + + A + F+ M+ G RP ++ L L E + AV L +++ Sbjct: 182 EMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKD-CAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMN 324 HSP 2 Score: 68.9366 bits (167), Expect = 1.960e-11 Identity = 40/132 (30.30%), Postives = 70/132 (53.03%), Query Frame = 3 Query: 6 RMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYN-AQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQAL 398 R+ +M+ P+ + Y VL L++ + A+ +K M R+ G PTV++ ++++ C N VD ++I+ EM RG P + Y TLI+ LC ++D+A K F EM++ P +++L L Sbjct: 107 RVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNM-REIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGL 237
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP218_ARATH (Pentatricopeptide repeat-containing protein At3g07290, mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15 Identity = 45/144 (31.25%), Postives = 76/144 (52.78%), Query Frame = 3 Query: 42 PNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTPLV 473 PNS +Y I++H L + GR EEA+ + +M K G +P+ TY ++++ C +D A ++DEM RG P +H Y+ LI+ LC + K+++A ++M+ I P ++ L +G A L ++K P V Sbjct: 264 PNSVSYSILIHGLCEVGRLEEAFGLKDQMGEK-GCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNV 406
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP383_ARATH (Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 2.473e-14 Identity = 45/120 (37.50%), Postives = 69/120 (57.50%), Query Frame = 3 Query: 6 RMMDEMRKCGIGPNSRTYDIVLHHLIKAGRT-EEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 362 ++ DEM + G+ P RTY H ++ RT EE + + +M RK G EPTV TY +++R C D + +WDEMK + V P + Y +I+ L K+++A Y++EM D G+RP Sbjct: 394 QVFDEMLEKGLFPTIRTY----HAFMRILRTGEEVFELLAKM-RKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRP 508
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP217_ARATH (Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.473e-14 Identity = 46/149 (30.87%), Postives = 78/149 (52.35%), Query Frame = 3 Query: 3 YRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQL-FSNLKQALRDEGMEETAVVLAQKI 446 Y +++ R G P+ Y+ +L L K G+ +EA VF+ M K P +STY I++ M C ++D A + D M+ G+ P + + +++ LC KLD+AC F+EM D + P ++ F +L L G + A + +K+ Sbjct: 328 YSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEM--KKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEM-DYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKM 473 HSP 2 Score: 75.0998 bits (183), Expect = 2.734e-13 Identity = 45/153 (29.41%), Postives = 80/153 (52.29%), Query Frame = 3 Query: 9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 467 M +E++ P++R+Y I++H LIKAG E Y +F M ++ G Y IV+ FC +V+ A ++ +EMK +G P + Y ++I+ L D+LD+A F+E I ++S+L G + A ++ +++ + TP Sbjct: 539 MFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSM-KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTP 690 HSP 3 Score: 67.3958 bits (163), Expect = 5.702e-11 Identity = 43/155 (27.74%), Postives = 81/155 (52.26%), Query Frame = 3 Query: 3 YRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 467 Y + M++ G ++R Y+IV+ K G+ +AY + + M K G EPTV TY V+ ++D A +++E K++ + + +YS+LI+ ++D+A +E++ G+ P +++L AL A+V Q + +L+ TP Sbjct: 572 YELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTK-GFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTP 725 The following BLAST results are available for this feature:
BLAST of EH406224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EH406224 ID=EH406224; Name=EH406224; organism=Citrus clementina; type=EST; length=573bpback to top |