EH406224

Overview
NameEH406224
Unique NameEH406224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PPR94_ARATH (Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 39/134 (29.10%), Postives = 73/134 (54.48%), Query Frame = 3
Query:    9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 410
            ++D+M + G  P++ T+  ++H L    +  EA ++  +M ++ G +P + TY  VV   C    +D+A+ +  +M+   +   + +Y+T+I+ LC    +DDA   F EM + GIRP    +S+L   L + G
Sbjct:  175 LVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQR-GCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYG 307          

HSP 2 Score: 68.1662 bits (165), Expect = 3.343e-11
Identity = 45/146 (30.82%), Postives = 77/146 (52.74%), Query Frame = 3
Query:    9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 446
            ++D+M + G  P+  TY  V++ L K G  + A S+ K+M  K   E  V  Y  ++   C    +D A+ ++ EM  +G+ P +  YS+LI+ LC+  +  DA +   +M++  I P    FS    AL D  ++E  +V A+K+
Sbjct:  210 LVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKME-KGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFS----ALIDAFVKEGKLVEAEKL 350          

HSP 3 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 40/142 (28.17%), Postives = 74/142 (52.11%), Query Frame = 3
Query:   18 EMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA-LRDEGMEETAVVLAQ 440
            +M   G+ PN  TY+I+L  L K G+  +A  VF+ + R    EP + TY I++   C   +V+    ++  +  +GV P +  Y+T+I+  C +   ++A    ++M + G  P    ++ L +A LRD   E +A ++ +
Sbjct:  458 QMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRST-MEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKE 598          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP442_ARATH (Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 37/120 (30.83%), Postives = 66/120 (55.00%), Query Frame = 3
Query:    3 YRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 362
            Y ++ EM+K  I  +  TY  V+  +  +G  + AY++ K M    G  P V  Y  +++ F  N++   AMR+  EMK +G+ P +  Y++LI  L    ++D+A  +  EM++ G++P
Sbjct:  402 YELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIAS-GCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKP 520          

HSP 2 Score: 68.5514 bits (166), Expect = 2.559e-11
Identity = 37/123 (30.08%), Postives = 65/123 (52.85%), Query Frame = 3
Query:   18 EMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 386
            EMR  GI P+  +Y ++++   K G  ++A S+F  M  + G  P V  Y +++  FC + +++ A  + DEM  +G+ P    Y T+I+  C    L +A + F EM   G+ P   +++ L
Sbjct:  617 EMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE-GLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTL 738          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP299_ARATH (Pentatricopeptide repeat-containing protein At4g01570 OS=Arabidopsis thaliana GN=At4g01570 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 40/132 (30.30%), Postives = 72/132 (54.55%), Query Frame = 3
Query:   39 GPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVL 434
            GP+  TY+ ++H L   G+ ++A  V+  + +  G EP  STY I+++  C + ++D AMRI+ EM+  G +P   +Y+ L++      K+ +AC+ F++M+  G+R     ++ L   L   G  E    L
Sbjct:  286 GPDICTYNSLIHVLCLFGKAKDALIVWDEL-KVSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNILIDGLFRNGRAEAGFTL 416          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP105_ARATH (Pentatricopeptide repeat-containing protein At1g64580 OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 44/145 (30.34%), Postives = 75/145 (51.72%), Query Frame = 3
Query:   18 EMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 452
            EM +  + PN  TY+ +++     G   +A  +F  M  K G  P V TY  ++  FC + +V+  M+++ EM  +G++     Y+TLI+  C   KL+ A K F  M+D G+ P    ++ L   L + G  E A+V+ + + K
Sbjct:  279 EMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSK-GCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQK 422          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PPR96_ARATH (Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.500e-11
Identity = 47/154 (30.52%), Postives = 76/154 (49.35%), Query Frame = 3
Query:    6 RMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 467
            ++ DEM K  I P+  TY  +++      R +EA  +F+ M  K    P V TY  +++ FC   +V+  M ++ EM  RG++     Y+TLI  L      D A K F++M+  G+ P    +S L   L   G  E A+V+ + + K +  P
Sbjct:  346 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD-CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP 498          

HSP 2 Score: 67.781 bits (164), Expect = 4.366e-11
Identity = 38/134 (28.36%), Postives = 74/134 (55.22%), Query Frame = 3
Query:    9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 410
            ++D+M      PN+ T++ ++H L    +  EA ++  RM  + G +P + TY  VV   C    +D+A+ +  +M+   +   + +Y+T+I++LC+   ++DA   F EM + GIRP    +++L + L + G
Sbjct:  172 LVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAR-GCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYG 304          

HSP 3 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 41/146 (28.08%), Postives = 78/146 (53.42%), Query Frame = 3
Query:    6 RMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA-LRDEGMEETAVVLAQ 440
            ++  +M   G+ P+  TY I+L  L K G+ E+A  VF+ + +K   EP + TY I++   C   +V+    ++  +  +GV P + +Y+T+I+  C +   ++A   F+EM + G  P    ++ L +A LRD     +A ++ +
Sbjct:  451 KIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL-QKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKE 595          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PPR5_ARATH (Putative pentatricopeptide repeat-containing protein At1g02420 OS=Arabidopsis thaliana GN=At1g02420 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.500e-11
Identity = 43/149 (28.86%), Postives = 76/149 (51.01%), Query Frame = 3
Query:    6 RMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTE--PTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 446
            +++DEM K G+ PN+ TY++    L  A     ++ ++ RM    G E  P   +   +++MF  + +VDMAMR+W++M  +G      +   L++ LC   K+++A K   EM++ G RP    F  +K  +      +    L QK+
Sbjct:  337 KLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWELYVRML---GNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDMVVKGFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRIKLLMELANKHDEVNNLIQKM 482          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP190_ARATH (Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.500e-11
Identity = 44/150 (29.33%), Postives = 73/150 (48.67%), Query Frame = 3
Query:    6 RMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG-MEETAVVLAQKIDK 452
            R  ++M   G+ P   TY+++L     + R E A   F+ M  + G  P  +T+  ++  FC   ++D A +++ EMK   + P +  Y+T+I      D++DD  + F+EM   GI P    +S L   L D G M E   +L   + K
Sbjct:  241 RYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALRFFEDMKTR-GISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAK 389          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PPR56_ARATH (Pentatricopeptide repeat-containing protein At1g22960, mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.960e-11
Identity = 41/132 (31.06%), Postives = 70/132 (53.03%), Query Frame = 3
Query:    9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPG----QLFSNLKQ 392
            + DEM +  + P+  TY ++++   KAGR E+A+     M +K G  P V T+  ++   C    +D A R   +M+  G+ P  + Y+ LI+  C  +K ++  K ++EMLD  I P G     LF +L++
Sbjct:  572 LYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEM-KKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDKEIEPDGYTHRALFKHLEK 702          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PPR12_ARATH (Pentatricopeptide repeat-containing protein At1g05665, mitochondrial OS=Arabidopsis thaliana GN=At1g05665 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.960e-11
Identity = 39/123 (31.71%), Postives = 68/123 (55.28%), Query Frame = 3
Query:   18 EMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 386
            E  + G+  N  +Y+IV+H + + GR +EA+ +   M  K G  P V +Y  VV  +C   ++D   ++ + MK +G+ P  ++Y ++I  LC   KL +A + F EM+  GI P   +++ L
Sbjct:  236 EFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELK-GYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTL 357          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PPR9_ARATH (Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.559e-11
Identity = 40/148 (27.03%), Postives = 74/148 (50.00%), Query Frame = 3
Query:    9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 452
            +  EM + GI      + +V+  L K G+  E Y+VF+ M RK G++P V+ Y +++  +  +  V+ A+R+   M   G  P +  YS ++N LC   ++++A  YF      G+      +S+L   L   G  + A  L +++ +
Sbjct:  314 LYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRK-GSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSE 460          

HSP 2 Score: 67.781 bits (164), Expect = 4.366e-11
Identity = 34/117 (29.06%), Postives = 61/117 (52.14%), Query Frame = 3
Query:    6 RMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGI 356
            R+ +EM + G   +S  Y+ ++    K  + +EA ++FKRM  + G + TV TY I++       + + A+++WD M  +G+ P    +  L   LC   K+  ACK   E+  +G+
Sbjct:  453 RLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMGV 569          
The following BLAST results are available for this feature:
BLAST of EH406224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
PPR94_ARATH1.149e-1129.10Pentatricopeptide repeat-containing protein At1g62... [more]
PP442_ARATH1.149e-1130.83Pentatricopeptide repeat-containing protein At5g61... [more]
PP299_ARATH1.149e-1130.30Pentatricopeptide repeat-containing protein At4g01... [more]
PP105_ARATH1.149e-1130.34Pentatricopeptide repeat-containing protein At1g64... [more]
PPR96_ARATH1.500e-1130.52Pentatricopeptide repeat-containing protein At1g62... [more]
PPR5_ARATH1.500e-1128.86Putative pentatricopeptide repeat-containing prote... [more]
PP190_ARATH1.500e-1129.33Pentatricopeptide repeat-containing protein At2g37... [more]
PPR56_ARATH1.960e-1131.06Pentatricopeptide repeat-containing protein At1g22... [more]
PPR12_ARATH1.960e-1131.71Pentatricopeptide repeat-containing protein At1g05... [more]
PPR9_ARATH2.559e-1127.03Pentatricopeptide repeat-containing protein At1g03... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DE04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406224 ID=EH406224; Name=EH406224; organism=Citrus clementina; type=EST; length=573bp
CATATAGGATGATGGATGAGATGAGGAAGTGTGGCATTGGTCCAAATTCT
CGAACTTATGATATAGTTCTTCATCACCTAATAAAGGCTGGAAGAACAGA
AGAGGCTTATTCGGTTTTTAAGAGAATGAGTCGCAAGCCAGGGACTGAGC
CAACTGTCAGTACCTATGAGATTGTAGTCAGGATGTTTTGCTACAACGCC
CAAGTAGATATGGCGATGAGGATTTGGGATGAGATGAAGGCAAGGGGAGT
TCTTCCTGTAATGCACATGTACTCGACATTGATTAATAGCTTGTGCCATG
AGGACAAGCTAGATGATGCTTGCAAGTACTTTCAAGAGATGCTGGATATT
GGTATTCGACCTCCTGGGCAGTTGTTTAGTAATCTAAAACAAGCTCTTCG
AGATGAGGGAATGGAGGAAACTGCTGTTGTTTTGGCTCAGAAGATTGACA
AATTGAGGAAAACTCCATTAGTTGATAGAGGTCAATGATAGGAGAGACTC
TAAAGCCCCTTTATTTATTTATTTTATGAATTAGCTCCAGAACAAGCTTT
CAATGAACAGAGAGAAGTTCTGA
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