EH406224

Overview
NameEH406224
Unique NameEH406224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP178_ARATH (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 47/155 (30.32%), Postives = 76/155 (49.03%), Query Frame = 3
Query:    9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTPLV 473
            +  EMR  GI  +  +Y+ +L    K GR+EEA  + + M+   G +  V TY  ++  +    + D   +++ EMK   VLP +  YSTLI+         +A + F+E    G+R    L+S L  AL   G+  +AV L  ++ K   +P V
Sbjct:  431 LFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMA-SVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNV 584          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PPR81_ARATH (Pentatricopeptide repeat-containing protein At1g55630 OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.447e-11
Identity = 39/114 (34.21%), Postives = 63/114 (55.26%), Query Frame = 3
Query:   12 MDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 353
            MDE  K G  P+   Y +++   I  G  E+A  +FK M+ K G  P V TY  ++R FC   +   A  +  EM++RG  P   +YSTL+N+L +  K+ +A +  ++M++ G
Sbjct:  350 MDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEK-GQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKG 462          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP152_ARATH (Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.447e-11
Identity = 41/151 (27.15%), Postives = 73/151 (48.34%), Query Frame = 3
Query:   15 DEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 467
            DEM K G+ P   TY+ ++H L    + E A  +  R  R+ G      TY I++  +C +     A  + DEM   G+ P    Y++LI  LC ++K  +A + F++++  G++P   + + L       G  + A  L +++D +   P
Sbjct:  351 DEMVKQGMVPTFYTYNTLIHGLFMENKIEAA-EILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINP 500          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP136_ARATH (Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.447e-11
Identity = 46/142 (32.39%), Postives = 72/142 (50.70%), Query Frame = 3
Query:    3 YRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAV 428
            YRM+DEM K G  P+S TY  +   L K     E  S+F RM R  G  P + TY +++R F     +   + +W  MK  G  P    Y+ +I++L  +  LD A +Y +EM++ G+ P        +  L ++ ++ET V
Sbjct:  314 YRMLDEMPKRGCQPDSITYMCLFSRLEKPS---EILSLFGRMIRS-GVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDALIQKGMLDMAREYEEEMIERGLSP------RRRPELVEKSLDETLV 445          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP106_ARATH (Pentatricopeptide repeat-containing protein At1g64582, mitochondrial OS=Arabidopsis thaliana GN=At1g64582 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.447e-11
Identity = 41/152 (26.97%), Postives = 75/152 (49.34%), Query Frame = 3
Query:    9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL-----KQALRDEGMEETAVVLAQKID 449
            ++ +M K G  P+  T+  +LH      R  +A+S+   M  K G EP V  Y  ++   C N ++++A+ + +EM+ +G+   +  Y+TL+  LC+  +  DA +  ++M+   I P    F+ L     KQ   DE  E    ++   +D
Sbjct:  128 VLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMV-KSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVD 278          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PPR76_ARATH (Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 42/153 (27.45%), Postives = 77/153 (50.33%), Query Frame = 3
Query:    9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 467
            + ++M+K G  P+  TY+I++    + G  +EA ++F+ + R    +P + +Y  ++     N  VD A   + EM+ +G+ P +  YSTL+      ++++ A   F+EML  G +P    ++ L   L   G    AV L  K+ +   TP
Sbjct:  464 LFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSD-CKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTP 615          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP366_ARATH (Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial OS=Arabidopsis thaliana GN=At5g06400 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 42/144 (29.17%), Postives = 66/144 (45.83%), Query Frame = 3
Query:   12 MDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQK 443
            ++ M++ G  P    Y  ++ +  K  + E+     ++M  +   EP+V TY  ++  +    +V+ A   +  M+ RG  P    YS  IN LC   K +DA K   EMLD GI P    F  +   L  EG  + A +  QK
Sbjct:  877 VNSMKEIGTKPGVHVYTSLIVYFFKEKQLEKVLETCQKMEGE-SCEPSVVTYTAMICGYMSLGKVEEAWNAFRNMEERGTSPDFKTYSKFINCLCQACKSEDALKLLSEMLDKGIAPSTINFRTVFYGLNREGKHDLARIALQK 1019          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP340_ARATH (Pentatricopeptide repeat-containing protein At4g28010 OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 41/142 (28.87%), Postives = 71/142 (50.00%), Query Frame = 3
Query:    9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVL 434
            + +EM+  G   +  T+ I++    KAG+ +EA    K M +  G E  +  Y  ++R FC   ++D    ++DE+  RG  P    Y+TLI   C   +L +A + F+ M++ G+RP    ++ L   L   G  + A+ L
Sbjct:  199 LANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEM-KFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQL 339          
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP155_ARATH (Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana GN=At2g15980 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 37/149 (24.83%), Postives = 77/149 (51.68%), Query Frame = 3
Query:   12 MDEMRKC--GIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 452
            +DE +K    I PN+ T++ ++    + G TE    +++ M  + G  P V +Y +++  +C    +  A ++W+EMK RGV+  +  Y+T+I  LC   ++  A + F++M   GI      + +L       G  ++ +V+ +++ +
Sbjct:  231 VDEAKKMIGKIKPNATTFNSMMVSFYREGETEMVERIWREMEEEVGCSPNVYSYNVLMEAYCARGLMSEAEKVWEEMKVRGVVYDIVAYNTMIGGLCSNFEVVKAKELFRDMGLKGIECTCLTYEHLVNGYCKAGDVDSGLVVYREMKR 379          
The following BLAST results are available for this feature:
BLAST of EH406224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
PP178_ARATH5.702e-1130.32Pentatricopeptide repeat-containing protein At2g31... [more]
PPR81_ARATH7.447e-1134.21Pentatricopeptide repeat-containing protein At1g55... [more]
PP152_ARATH7.447e-1127.15Pentatricopeptide repeat-containing protein At2g15... [more]
PP136_ARATH7.447e-1132.39Pentatricopeptide repeat-containing protein At1g80... [more]
PP106_ARATH7.447e-1126.97Pentatricopeptide repeat-containing protein At1g64... [more]
PPR76_ARATH9.726e-1127.45Pentatricopeptide repeat-containing protein At1g51... [more]
PP366_ARATH9.726e-1129.17Putative pentatricopeptide repeat-containing prote... [more]
PP340_ARATH9.726e-1128.87Pentatricopeptide repeat-containing protein At4g28... [more]
PP155_ARATH9.726e-1124.83Pentatricopeptide repeat-containing protein At2g15... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DE04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406224 ID=EH406224; Name=EH406224; organism=Citrus clementina; type=EST; length=573bp
CATATAGGATGATGGATGAGATGAGGAAGTGTGGCATTGGTCCAAATTCT
CGAACTTATGATATAGTTCTTCATCACCTAATAAAGGCTGGAAGAACAGA
AGAGGCTTATTCGGTTTTTAAGAGAATGAGTCGCAAGCCAGGGACTGAGC
CAACTGTCAGTACCTATGAGATTGTAGTCAGGATGTTTTGCTACAACGCC
CAAGTAGATATGGCGATGAGGATTTGGGATGAGATGAAGGCAAGGGGAGT
TCTTCCTGTAATGCACATGTACTCGACATTGATTAATAGCTTGTGCCATG
AGGACAAGCTAGATGATGCTTGCAAGTACTTTCAAGAGATGCTGGATATT
GGTATTCGACCTCCTGGGCAGTTGTTTAGTAATCTAAAACAAGCTCTTCG
AGATGAGGGAATGGAGGAAACTGCTGTTGTTTTGGCTCAGAAGATTGACA
AATTGAGGAAAACTCCATTAGTTGATAGAGGTCAATGATAGGAGAGACTC
TAAAGCCCCTTTATTTATTTATTTTATGAATTAGCTCCAGAACAAGCTTT
CAATGAACAGAGAGAAGTTCTGA
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