EH406224
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP178_ARATH (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11 Identity = 47/155 (30.32%), Postives = 76/155 (49.03%), Query Frame = 3 Query: 9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTPLV 473 + EMR GI + +Y+ +L K GR+EEA + + M+ G + V TY ++ + + D +++ EMK VLP + YSTLI+ +A + F+E G+R L+S L AL G+ +AV L ++ K +P V Sbjct: 431 LFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMA-SVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNV 584
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PPR81_ARATH (Pentatricopeptide repeat-containing protein At1g55630 OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.447e-11 Identity = 39/114 (34.21%), Postives = 63/114 (55.26%), Query Frame = 3 Query: 12 MDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 353 MDE K G P+ Y +++ I G E+A +FK M+ K G P V TY ++R FC + A + EM++RG P +YSTL+N+L + K+ +A + ++M++ G Sbjct: 350 MDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEK-GQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKG 462
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP152_ARATH (Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.447e-11 Identity = 41/151 (27.15%), Postives = 73/151 (48.34%), Query Frame = 3 Query: 15 DEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 467 DEM K G+ P TY+ ++H L + E A + R R+ G TY I++ +C + A + DEM G+ P Y++LI LC ++K +A + F++++ G++P + + L G + A L +++D + P Sbjct: 351 DEMVKQGMVPTFYTYNTLIHGLFMENKIEAA-EILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINP 500
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP136_ARATH (Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.447e-11 Identity = 46/142 (32.39%), Postives = 72/142 (50.70%), Query Frame = 3 Query: 3 YRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAV 428 YRM+DEM K G P+S TY + L K E S+F RM R G P + TY +++R F + + +W MK G P Y+ +I++L + LD A +Y +EM++ G+ P + L ++ ++ET V Sbjct: 314 YRMLDEMPKRGCQPDSITYMCLFSRLEKPS---EILSLFGRMIRS-GVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDALIQKGMLDMAREYEEEMIERGLSP------RRRPELVEKSLDETLV 445
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP106_ARATH (Pentatricopeptide repeat-containing protein At1g64582, mitochondrial OS=Arabidopsis thaliana GN=At1g64582 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.447e-11 Identity = 41/152 (26.97%), Postives = 75/152 (49.34%), Query Frame = 3 Query: 9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL-----KQALRDEGMEETAVVLAQKID 449 ++ +M K G P+ T+ +LH R +A+S+ M K G EP V Y ++ C N ++++A+ + +EM+ +G+ + Y+TL+ LC+ + DA + ++M+ I P F+ L KQ DE E ++ +D Sbjct: 128 VLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMV-KSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVD 278
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PPR76_ARATH (Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11 Identity = 42/153 (27.45%), Postives = 77/153 (50.33%), Query Frame = 3 Query: 9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 467 + ++M+K G P+ TY+I++ + G +EA ++F+ + R +P + +Y ++ N VD A + EM+ +G+ P + YSTL+ ++++ A F+EML G +P ++ L L G AV L K+ + TP Sbjct: 464 LFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSD-CKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTP 615
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP366_ARATH (Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial OS=Arabidopsis thaliana GN=At5g06400 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11 Identity = 42/144 (29.17%), Postives = 66/144 (45.83%), Query Frame = 3 Query: 12 MDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQK 443 ++ M++ G P Y ++ + K + E+ ++M + EP+V TY ++ + +V+ A + M+ RG P YS IN LC K +DA K EMLD GI P F + L EG + A + QK Sbjct: 877 VNSMKEIGTKPGVHVYTSLIVYFFKEKQLEKVLETCQKMEGE-SCEPSVVTYTAMICGYMSLGKVEEAWNAFRNMEERGTSPDFKTYSKFINCLCQACKSEDALKLLSEMLDKGIAPSTINFRTVFYGLNREGKHDLARIALQK 1019
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP340_ARATH (Pentatricopeptide repeat-containing protein At4g28010 OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11 Identity = 41/142 (28.87%), Postives = 71/142 (50.00%), Query Frame = 3 Query: 9 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVL 434 + +EM+ G + T+ I++ KAG+ +EA K M + G E + Y ++R FC ++D ++DE+ RG P Y+TLI C +L +A + F+ M++ G+RP ++ L L G + A+ L Sbjct: 199 LANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEM-KFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQL 339
BLAST of EH406224 vs. ExPASy Swiss-Prot
Match: PP155_ARATH (Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana GN=At2g15980 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11 Identity = 37/149 (24.83%), Postives = 77/149 (51.68%), Query Frame = 3 Query: 12 MDEMRKC--GIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 452 +DE +K I PN+ T++ ++ + G TE +++ M + G P V +Y +++ +C + A ++W+EMK RGV+ + Y+T+I LC ++ A + F++M GI + +L G ++ +V+ +++ + Sbjct: 231 VDEAKKMIGKIKPNATTFNSMMVSFYREGETEMVERIWREMEEEVGCSPNVYSYNVLMEAYCARGLMSEAEKVWEEMKVRGVVYDIVAYNTMIGGLCSNFEVVKAKELFRDMGLKGIECTCLTYEHLVNGYCKAGDVDSGLVVYREMKR 379 The following BLAST results are available for this feature:
BLAST of EH406224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >EH406224 ID=EH406224; Name=EH406224; organism=Citrus clementina; type=EST; length=573bpback to top |