EH406265

Overview
NameEH406265
Unique NameEH406265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_SYNY3 (Threonyl-tRNA synthetase OS=Synechocystis sp. (strain PCC 6803) GN=thrS PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.160e-52
Identity = 93/178 (52.25%), Postives = 135/178 (75.84%), Query Frame = 3
Query:    9 AFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRTT 539
            AFYGPK+D   +DAL R+WQ  T+QVD+NLP+RFD+ Y+ ++  ++RP+MIHRA  GSLER  G+LIE YAGDFPLWL+PIQ R+L V+D  L +   +++++++ G+RAE+   G+RL K+IRNAEKQKIP+MAV+GAKEV+A  + +R+R  GELG + V + + ++++   N  T
Sbjct:  425 AFYGPKLDFIFQDALEREWQLGTVQVDYNLPERFDLEYIAADGSRQRPVMIHRAPFGSLERLIGILIEEYAGDFPLWLAPIQVRLLAVSDEFLPFAQSIVQQMQSLGLRAEVDTSGDRLGKMIRNAEKQKIPVMAVIGAKEVEANALNIRTRASGELGEIPVTEVLEKLQATVTNHDT 602          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CLOTH (Threonyl-tRNA synthetase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=thrS PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.209e-52
Identity = 91/177 (51.41%), Postives = 129/177 (72.88%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GAFYGPKID  +ED++GR WQC TIQ+DF +P+RFD+ Y+  + EK RP+MIHR V GS+ERF  +L EHYAG FP+WLSP+Q ++LP+ + Q +Y  EV K L+  G+R E     E++   IR A+ +K+P M V+G KE++ +TV VRSR  G+LG M+++DF++RI  A +N+
Sbjct:  457 GAFYGPKIDFHLEDSIGRTWQCGTIQLDFQMPERFDLTYIGPDGEKHRPVMIHRVVFGSIERFIAILTEHYAGAFPVWLSPVQVKILPILEKQHDYVAEVKKALEEKGVRVEADLRNEKIGYKIREAQLEKVPYMLVIGDKEMENRTVAVRSRKDGDLGPMRLEDFVNRIVEAIKNK 633          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_THISH (Threonyl-tRNA synthetase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=thrS PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.072e-51
Identity = 94/178 (52.81%), Postives = 132/178 (74.16%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GGAFYGPKID+KI DA+GR+WQCST+Q+DFNLP+RF++ YV  ++ ++RPIMIHRA+LGS+ERFFGVLIEHYAG FPLWL+P+Q +VL +TD Q +Y  EV  +L+  GIRA+     E++   IR    Q++P + V+G +E++  TV VR+R G +LG+M ++    R+     +R
Sbjct:  459 GGAFYGPKIDIKIRDAIGREWQCSTVQLDFNLPERFEMEYVAEDNSRRRPIMIHRALLGSVERFFGVLIEHYAGSFPLWLAPVQVQVLTITDRQDDYAREVADRLRNRGIRADADLRNEKIGFKIREHTLQRVPYLLVLGDREMETNTVAVRTRSGEDLGSMDLNQLSERLAGEIASR 636          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_PELPD (Threonyl-tRNA synthetase OS=Pelobacter propionicus (strain DSM 2379) GN=thrS PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.388e-51
Identity = 96/176 (54.55%), Postives = 130/176 (73.86%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAE-ICHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATEN 530
            GAFYGPKID+K++DAL R+WQC+TIQ DF LP+RFD+ YV ++ EKKRP+M+HR VLG++ERF GVLIEHYAG+FPLWLSP+QA ++ VTD  + Y   V++ L+  GIR +     E+L   IR A+ QK+P M V+G KE+++ TVT R R G  L  MK +DF++ +   T+N
Sbjct:  459 GAFYGPKIDIKLKDALDRRWQCATIQCDFTLPERFDLQYVAADGEKKRPVMVHRVVLGAIERFIGVLIEHYAGNFPLWLSPVQAMLVTVTDNHIPYAQGVLEHLREAGIRVQGDFRNEKLSFKIREAQLQKVPYMLVIGDKEMESATVTPRFRDGKNLVAMKPEDFVAFVVEETKN 634          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_THEEB (Threonyl-tRNA synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=thrS PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.321e-51
Identity = 93/172 (54.07%), Postives = 127/172 (73.84%), Query Frame = 3
Query:    9 AFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSA 521
            AFYGPK+D   EDALGR+WQ  T+QVD+NLP+RFD+ YV  ++ ++RP+MIHRA  GSLER  G+LIE YAGDFP WL+P Q R+LPV D Q  Y   V  +L+  G+R  +   G+RL K IRNAE QKIP+M ++GAKEV+ +TV++R+R  G++GT  ++  I+++ SA
Sbjct:  423 AFYGPKLDFIFEDALGREWQLGTVQVDYNLPERFDLEYVAEDNTRRRPVMIHRAPFGSLERLIGILIEEYAGDFPFWLAPEQVRLLPVGDEQRPYAERVAAQLRERGVRVSVDRSGDRLGKQIRNAETQKIPVMGIIGAKEVEHETVSIRTRAAGDVGTFALEHLIAKLTSA 594          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CLOAB (Threonyl-tRNA synthetase OS=Clostridium acetobutylicum GN=thrS PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.949e-51
Identity = 90/177 (50.85%), Postives = 129/177 (72.88%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAE-ICHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GAFYGPKID  ++D +GR WQC TIQ+DF +P+RFDI Y+ ++ EK RP+M+HR V GS+ERF G+LIEHYAG FP WL+P+Q +V+ +TD+Q+EY + + +KLK  GIR E     E++   IR A+ +K+P M V+G KE+    ++VRSR  G+LG+M ++DFI RI +  + +
Sbjct:  457 GAFYGPKIDFHLKDCIGRTWQCGTIQLDFQMPERFDINYIGADGEKHRPVMVHRVVFGSIERFIGILIEHYAGAFPTWLAPVQVKVMNITDSQVEYVDAISEKLKEAGIRVEKDVRNEKIGYKIREAQLKKVPYMIVIGDKEIKEGIISVRSRKEGDLGSMNIEDFIFRINAEVKEK 633          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_AQUAE (Threonyl-tRNA synthetase OS=Aquifex aeolicus GN=thrS PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.949e-51
Identity = 97/178 (54.49%), Postives = 131/178 (73.60%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GGAFYGPKID+KI DA+GR WQ STIQ DFNLP+RFD+ YV  +++K RP MIHRA+LGS+ERF G+L+EHYAG  P+WLSP Q  ++P+ D   EY  +V + LK NGIRAE+    ER+   IR+AE +KIP++ VVG +E    TV+VR++  G LG+M+++ F+  IK   +N+
Sbjct:  460 GGAFYGPKIDVKIRDAIGRMWQLSTIQFDFNLPERFDMTYVGPDNKKHRPYMIHRALLGSIERFTGILLEHYAGLLPIWLSPTQVMIIPIADRHHEYAKKVYEFLKENGIRAEMDLREERMNAKIRDAELKKIPVILVVGDREAQNNTVSVRTKKEGNLGSMELNKFLDWIKEKIKNK 637          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CLOD6 (Threonyl-tRNA synthetase OS=Clostridium difficile (strain 630) GN=thrS PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.185e-50
Identity = 93/180 (51.67%), Postives = 128/180 (71.11%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRTTM 542
            GAFYGPKID  ++D LGR WQC TIQ+D  LP++FD  Y+  + EK RP+MIHR   GS+ERF G+LIEHYAG FP+WLSP Q ++LP++D  ++Y NEV K+L   GIR E+    E++   IR A+ +K+P M +VG KEV    V+VRSR  GE+G++K+D+FI+ I    E+R ++
Sbjct:  457 GAFYGPKIDFHLKDCLGRTWQCGTIQLDMQLPRQFDNTYIGQDGEKHRPVMIHRVAFGSIERFIGILIEHYAGKFPVWLSPTQVKILPISDKFMDYANEVKKELFDKGIRVELDDRAEKIGFKIREAQLEKVPYMLIVGEKEVADNNVSVRSRDKGEIGSIKLDEFIASISKEIESRESI 636          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CLOBL (Threonyl-tRNA synthetase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=thrS PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.185e-50
Identity = 89/178 (50.00%), Postives = 130/178 (73.03%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 536
            GAFYGPKID  ++D +GR WQC TIQ+DF +P+RFD+ Y+ ++ EK RP+M+HR + GS+ERF G+LIE YAG FP WL+P+Q +++ +TD+Q +Y  +V + LK N IR EI    E++   IR A+ QK+P M ++G KEV+A  V VRSR  G+LG + +++FI +IK+  +N+T
Sbjct:  457 GAFYGPKIDFHLKDCIGRTWQCGTIQLDFQMPERFDLSYIGADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTWLAPVQVKLMNITDSQYDYLKKVEETLKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRKDGDLGAISLEEFIEKIKNEIKNKT 634          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CLOBJ (Threonyl-tRNA synthetase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=thrS PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.185e-50
Identity = 89/178 (50.00%), Postives = 130/178 (73.03%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 536
            GAFYGPKID  ++D +GR WQC TIQ+DF +P+RFD+ Y+ ++ EK RP+M+HR + GS+ERF G+LIE YAG FP WL+P+Q +++ +TD+Q +Y  +V + LK N IR EI    E++   IR A+ QK+P M ++G KEV+A  V VRSR  G+LG + +++FI +IK+  +N+T
Sbjct:  457 GAFYGPKIDFHLKDCIGRTWQCGTIQLDFQMPERFDLSYIGADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTWLAPVQVKLMNITDSQYDYLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRKDGDLGAISLEEFIEKIKNEIKNKT 634          
The following BLAST results are available for this feature:
BLAST of EH406265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_SYNY32.160e-5252.25Threonyl-tRNA synthetase OS=Synechocystis sp. (str... [more]
SYT_CLOTH8.209e-5251.41Threonyl-tRNA synthetase OS=Clostridium thermocell... [more]
SYT_THISH1.072e-5152.81Threonyl-tRNA synthetase OS=Thioalkalivibrio sp. (... [more]
SYT_PELPD2.388e-5154.55Threonyl-tRNA synthetase OS=Pelobacter propionicus... [more]
SYT_THEEB5.321e-5154.07Threonyl-tRNA synthetase OS=Thermosynechococcus el... [more]
SYT_CLOAB6.949e-5150.85Threonyl-tRNA synthetase OS=Clostridium acetobutyl... [more]
SYT_AQUAE6.949e-5154.49Threonyl-tRNA synthetase OS=Aquifex aeolicus GN=th... [more]
SYT_CLOD61.185e-5051.67Threonyl-tRNA synthetase OS=Clostridium difficile ... [more]
SYT_CLOBL1.185e-5050.00Threonyl-tRNA synthetase OS=Clostridium botulinum ... [more]
SYT_CLOBJ1.185e-5050.00Threonyl-tRNA synthetase OS=Clostridium botulinum ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BG09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406265 ID=EH406265; Name=EH406265; organism=Citrus clementina; type=EST; length=737bp
GTGGTGGTGCGTTTTATGGTCCAAAGATTGATCTTAAGATTGAGGATGCT
CTTGGAAGGAAGTGGCAGTGCTCAACCATACAGGTTGATTTCAATTTACC
ACAGCGATTTGACATTGTGTATGTTGACTCAAACTCAGAAAAGAAGCGTC
CCATCATGATCCACAGAGCAGTGCTTGGATCCTTGGAACGTTTCTTTGGA
GTTCTAATAGAGCATTATGCTGGGGATTTTCCTTTGTGGCTTTCTCCAAT
CCAAGCTCGTGTTTTACCAGTTACAGACACACAGCTTGAGTACTGTAATG
AGGTGATAAAAAAACTGAAAACTAATGGTATACGAGCTGAAATTTGCCAT
GGTGAGCGCCTGCCTAAGCTCATTAGAAATGCAGAGAAACAGAAAATTCC
ATTAATGGCAGTCGTTGGAGCTAAGGAAGTTGATGCACAAACTGTTACAG
TCAGATCTAGGTTTGGTGGAGAGCTTGGGACCATGAAAGTTGATGATTTT
ATCAGCAGAATCAAGTCTGCCACTGAAAACAGAACTACAATGTAAAGTTC
TTTGAAATTCTTAGACATGATATTTTTACAGGGATTTGAATACATACGAT
TTTCATTAGATAGCGACATTTTTTTACTCGTAAATTTATCTACTTGAGAA
ACTAAATATTTCTAATTTATGGTTGTAGCCTGTGTACAATAATTTTAGTT
TCTATTTTTCCTAATAAGCAAATAAATATCTGTTTAT
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