EH406265

Overview
NameEH406265
Unique NameEH406265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9839 contig Ccv1_Contig9839:4..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CLOBH (Threonyl-tRNA synthetase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=thrS PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.185e-50
Identity = 89/178 (50.00%), Postives = 130/178 (73.03%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 536
            GAFYGPKID  ++D +GR WQC TIQ+DF +P+RFD+ Y+ ++ EK RP+M+HR + GS+ERF G+LIE YAG FP WL+P+Q +++ +TD+Q +Y  +V + LK N IR EI    E++   IR A+ QK+P M ++G KEV+A  V VRSR  G+LG + +++FI +IK+  +N+T
Sbjct:  457 GAFYGPKIDFHLKDCIGRTWQCGTIQLDFQMPERFDLSYIGADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTWLAPVQVKLMNITDSQYDYLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRKDGDLGAISLEEFIEKIKNEIKNKT 634          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CLOB1 (Threonyl-tRNA synthetase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=thrS PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.185e-50
Identity = 89/178 (50.00%), Postives = 130/178 (73.03%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 536
            GAFYGPKID  ++D +GR WQC TIQ+DF +P+RFD+ Y+ ++ EK RP+M+HR + GS+ERF G+LIE YAG FP WL+P+Q +++ +TD+Q +Y  +V + LK N IR EI    E++   IR A+ QK+P M ++G KEV+A  V VRSR  G+LG + +++FI +IK+  +N+T
Sbjct:  457 GAFYGPKIDFHLKDCIGRTWQCGTIQLDFQMPERFDLSYIGADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTWLAPVQVKLMNITDSQYDYLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRKDGDLGAISLEEFIEKIKNEIKNKT 634          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CLOTE (Threonyl-tRNA synthetase OS=Clostridium tetani GN=thrS PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.022e-50
Identity = 88/177 (49.72%), Postives = 125/177 (70.62%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GAFYGPKID  ++D +GR WQC TIQ+DF +P+RFD+ YV  + EK RP+M+HR V GS+ERF G+LIEH+AG FP WL+P+Q +V+ +TD+Q +Y N+V+  LK  GIR E     E++   IR A+ QK+P M ++G KEV    V VRSR  G+LG + + +F++++    +NR
Sbjct:  457 GAFYGPKIDFHLKDCIGRTWQCGTIQLDFQMPERFDLTYVGQDGEKHRPVMVHRVVFGSIERFIGILIEHFAGAFPTWLAPVQVKVMTITDSQKDYANKVVNDLKEKGIRVEFDDRNEKIGYKIREAQLQKVPYMIILGDKEVSENKVAVRSRKEGDLGAISLKEFVAKLNYEIDNR 633          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_MAGSM (Threonyl-tRNA synthetase OS=Magnetococcus sp. (strain MC-1) GN=thrS PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.311e-49
Identity = 93/178 (52.25%), Postives = 125/178 (70.22%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GGAFYGPKID+KI D++GRKWQCST+Q+DFNLP+RFD+ Y+  + E  RPIMIHRA++GSLERFFG+L+EHYAG FP+WL+P+QA V  +TD Q  Y   V+  LK  G+R EI    E++   IR    +++P + VVG KE +  TV VR R G  LG++ + D + R+     +R
Sbjct:  460 GGAFYGPKIDVKITDSIGRKWQCSTVQLDFNLPERFDMGYIGEDGESHRPIMIHRALMGSLERFFGILVEHYAGWFPMWLAPVQAVVCSITDAQHAYAETVLAALKKAGLRVEIDLRNEKVGYKIREHTLKRVPYLLVVGDKEREEGTVNVRLRSGKSLGSLPIQDVVERLVEEAASR 637          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CLOBM (Threonyl-tRNA synthetase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=thrS PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.311e-49
Identity = 89/178 (50.00%), Postives = 128/178 (71.91%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 536
            GAFYGPKID  ++D +GR WQC TIQ+DF +P+RFD+ Y+ ++ EK RP+M+HR + GS+ERF G+LIE YAG FP WL+P+Q +++ +TD Q +Y  +V + LK N IR EI    E++   IR A+ QKIP M ++G KEV+A  V VRSR  G+LG + +++FI +IK+  + +T
Sbjct:  457 GAFYGPKIDFHLKDCIGRTWQCGTIQLDFQMPERFDLSYIGADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTWLAPVQVKLMNITDAQYDYLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKIPYMLILGDKEVEAGKVAVRSRKDGDLGAISLEEFIEKIKNEIKVKT 634          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CLOBK (Threonyl-tRNA synthetase OS=Clostridium botulinum (strain Okra / Type B1) GN=thrS PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.311e-49
Identity = 88/178 (49.44%), Postives = 128/178 (71.91%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 536
            GAFYGPKID  ++D +GR WQC TIQ+DF +P+RFD+ Y+ ++ EK RP+M+HR + GS+ERF G+LIE YAG FP WL+P+Q +++ +TD Q +Y  +V + LK N IR EI    E++   IR A+ QK+P M ++G KEV+A  V VRSR  G+LG + +++FI +IK+  + +T
Sbjct:  457 GAFYGPKIDFHLKDCIGRTWQCGTIQLDFQMPERFDLSYIGADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTWLAPVQVKLMNITDAQYDYLKKVEETLKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRKDGDLGAISLEEFIEKIKNEIKAKT 634          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_DESRM (Threonyl-tRNA synthetase OS=Desulfotomaculum reducens (strain MI-1) GN=thrS PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.712e-49
Identity = 89/178 (50.00%), Postives = 126/178 (70.79%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 536
            GAFYGPKID  + D+LGR WQC TIQ+DF +P+RF++ YV  + +K RP+MIHR V GS+ERF G+L EH+AG FP+WL+P+Q +VLP+TD   EY  E++K+L+   IR E+    E++   IR A+ QKIP M V+G +E++   V VR R  G++G + V DFI +I+   +N+T
Sbjct:  457 GAFYGPKIDFHLTDSLGRTWQCGTIQLDFQMPERFNLNYVGEDGQKHRPVMIHRVVFGSIERFIGILTEHFAGAFPVWLAPVQVKVLPITDRHHEYARELVKRLQGLDIRVELDARNEKINYKIREAQTQKIPYMLVIGDREMEQGAVAVRERGKGDVGAISVGDFIKKIEDDIQNKT 634          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CLOB6 (Threonyl-tRNA synthetase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=thrS PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.712e-49
Identity = 88/178 (49.44%), Postives = 128/178 (71.91%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 536
            GAFYGPKID  ++D +GR WQC TIQ+DF +P+RFD+ Y+ ++ EK RP+M+HR + GS+ERF G+LIE YAG FP WL+P+Q +++ +TD Q +Y  +V + LK N IR EI    E++   IR A+ QK+P M ++G KEV+A  V VRSR  G+LG + +++FI +IK+  + +T
Sbjct:  457 GAFYGPKIDFHLKDCIGRTWQCGTIQLDFQMPERFDLSYIGADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTWLAPVQVKLMNITDAQYDYLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRKDGDLGAISLEEFIEKIKNEIKVKT 634          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_GEOBB (Threonyl-tRNA synthetase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=thrS PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.236e-49
Identity = 93/176 (52.84%), Postives = 126/176 (71.59%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAE-ICHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATEN 530
            GAFYGPKID+K+ DAL R+WQC+TIQ DF LP+RFD+ YVD++ EKKRP+M+HR +LG++ERF GVLIEH+AG+FP WL+P+QA ++ VTD Q+ Y      KL+  GIR +     E+L   IR A+ QKIP M VVG KEV++  +  R R G  L +M  + F+S I+S  ++
Sbjct:  459 GAFYGPKIDIKLRDALDRRWQCATIQCDFTLPERFDLTYVDADGEKKRPVMVHRVILGAIERFIGVLIEHFAGNFPTWLAPVQATIVTVTDNQIPYAQAAFDKLRAAGIRVQKDFRNEKLGFKIREAQLQKIPYMLVVGDKEVESGMLAPRFRDGKNLESMTPEQFVSFIESEVKS 634          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CLOK5 (Threonyl-tRNA synthetase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=thrS PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.813e-49
Identity = 85/177 (48.02%), Postives = 125/177 (70.62%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GAFYGPKID  ++D +GR WQC T+Q+DF +P++FD+ Y+ ++ EK RP+MIHR V GS+ERF G+LIEHYAG FP W++P+Q +V+ +TD Q +Y  EV K LK N IR E     E++   IR A+  K+P M ++G KE+  + ++VRSR  G++G M ++DFI ++K   + +
Sbjct:  457 GAFYGPKIDFHLKDCIGRTWQCGTVQLDFQMPEKFDLNYIGADGEKHRPVMIHRVVFGSIERFIGILIEHYAGAFPAWIAPVQVQVMNITDAQADYVAEVAKTLKENNIRVECDIRNEKIGYKIREAQMHKVPYMIILGDKEMKDKNISVRSRKEGDIGAMSLEDFILKLKEEIDKK 633          
The following BLAST results are available for this feature:
BLAST of EH406265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_CLOBH1.185e-5050.00Threonyl-tRNA synthetase OS=Clostridium botulinum ... [more]
SYT_CLOB11.185e-5050.00Threonyl-tRNA synthetase OS=Clostridium botulinum ... [more]
SYT_CLOTE2.022e-5049.72Threonyl-tRNA synthetase OS=Clostridium tetani GN=... [more]
SYT_MAGSM1.311e-4952.25Threonyl-tRNA synthetase OS=Magnetococcus sp. (str... [more]
SYT_CLOBM1.311e-4950.00Threonyl-tRNA synthetase OS=Clostridium botulinum ... [more]
SYT_CLOBK1.311e-4949.44Threonyl-tRNA synthetase OS=Clostridium botulinum ... [more]
SYT_DESRM1.712e-4950.00Threonyl-tRNA synthetase OS=Desulfotomaculum reduc... [more]
SYT_CLOB61.712e-4949.44Threonyl-tRNA synthetase OS=Clostridium botulinum ... [more]
SYT_GEOBB2.236e-4952.84Threonyl-tRNA synthetase OS=Geobacter bemidjiensis... [more]
SYT_CLOK53.813e-4948.02Threonyl-tRNA synthetase OS=Clostridium kluyveri (... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BG09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406265 ID=EH406265; Name=EH406265; organism=Citrus clementina; type=EST; length=737bp
GTGGTGGTGCGTTTTATGGTCCAAAGATTGATCTTAAGATTGAGGATGCT
CTTGGAAGGAAGTGGCAGTGCTCAACCATACAGGTTGATTTCAATTTACC
ACAGCGATTTGACATTGTGTATGTTGACTCAAACTCAGAAAAGAAGCGTC
CCATCATGATCCACAGAGCAGTGCTTGGATCCTTGGAACGTTTCTTTGGA
GTTCTAATAGAGCATTATGCTGGGGATTTTCCTTTGTGGCTTTCTCCAAT
CCAAGCTCGTGTTTTACCAGTTACAGACACACAGCTTGAGTACTGTAATG
AGGTGATAAAAAAACTGAAAACTAATGGTATACGAGCTGAAATTTGCCAT
GGTGAGCGCCTGCCTAAGCTCATTAGAAATGCAGAGAAACAGAAAATTCC
ATTAATGGCAGTCGTTGGAGCTAAGGAAGTTGATGCACAAACTGTTACAG
TCAGATCTAGGTTTGGTGGAGAGCTTGGGACCATGAAAGTTGATGATTTT
ATCAGCAGAATCAAGTCTGCCACTGAAAACAGAACTACAATGTAAAGTTC
TTTGAAATTCTTAGACATGATATTTTTACAGGGATTTGAATACATACGAT
TTTCATTAGATAGCGACATTTTTTTACTCGTAAATTTATCTACTTGAGAA
ACTAAATATTTCTAATTTATGGTTGTAGCCTGTGTACAATAATTTTAGTT
TCTATTTTTCCTAATAAGCAAATAAATATCTGTTTAT
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