EH406265

Overview
NameEH406265
Unique NameEH406265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9839 contig Ccv1_Contig9839:4..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_ACIF2 (Threonyl-tRNA synthetase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=thrS PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.228e-48
Identity = 92/165 (55.76%), Postives = 120/165 (72.73%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVD 494
            GGAFYGPKIDLKI+DA+GRKWQCST+Q+DFNLP+RF + YV  +  +K PIM+HRA+ GS+ERFFGVLIEHY G FP+WL+P+QA VLP+++   EY   V   L   GIRAE     E++   IR    +++P + VVG +E +A TV VR R G +LGT+ +D
Sbjct:  459 GGAFYGPKIDLKIQDAIGRKWQCSTVQLDFNLPERFAMEYVAEDGARKVPIMVHRAIFGSIERFFGVLIEHYEGKFPVWLAPVQAVVLPISEHYSEYAESVSDVLVKRGIRAETDLRNEKIGYKIRAHTLRRVPYLLVVGEREKEAGTVAVRDRNGQDLGTLSID 623          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_ACIBY (Threonyl-tRNA synthetase OS=Acinetobacter baumannii (strain AYE) GN=thrS PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.228e-48
Identity = 94/177 (53.11%), Postives = 121/177 (68.36%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRA-EICHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GAFYGPKI+  ++D LGR WQC TIQ DFNLP R D  YV   +E+ +P+M+HRA+LGS ERF G+LIEHYAG  P WLSP+QA V+ +TD+Q E   +V+ KLK NG+RA      E++   IR    ++IP + V+G +EV+  TV VR+R G  LGTM VD FI  +KSA   R
Sbjct:  458 GAFYGPKIEFSLKDCLGRVWQCGTIQCDFNLPVRLDASYVTEENERDQPVMLHRAILGSFERFIGILIEHYAGFMPPWLSPVQACVMNITDSQAEASEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGKNLGTMSVDAFIDLVKSAVAER 634          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_ACIBT (Threonyl-tRNA synthetase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=thrS PE=3 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.228e-48
Identity = 94/177 (53.11%), Postives = 121/177 (68.36%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRA-EICHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GAFYGPKI+  ++D LGR WQC TIQ DFNLP R D  YV   +E+ +P+M+HRA+LGS ERF G+LIEHYAG  P WLSP+QA V+ +TD+Q E   +V+ KLK NG+RA      E++   IR    ++IP + V+G +EV+  TV VR+R G  LGTM VD FI  +KSA   R
Sbjct:  458 GAFYGPKIEFSLKDCLGRVWQCGTIQCDFNLPVRLDASYVTEENERDQPVMLHRAILGSFERFIGILIEHYAGFMPPWLSPVQACVMNITDSQAEASEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGKNLGTMSVDAFIDLVKSAVAER 634          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_ACIBS (Threonyl-tRNA synthetase OS=Acinetobacter baumannii (strain SDF) GN=thrS PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.228e-48
Identity = 94/177 (53.11%), Postives = 121/177 (68.36%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRA-EICHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GAFYGPKI+  ++D LGR WQC TIQ DFNLP R D  YV   +E+ +P+M+HRA+LGS ERF G+LIEHYAG  P WLSP+QA V+ +TD+Q E   +V+ KLK NG+RA      E++   IR    ++IP + V+G +EV+  TV VR+R G  LGTM VD FI  +KSA   R
Sbjct:  458 GAFYGPKIEFSLKDCLGRVWQCGTIQCDFNLPVRLDASYVTEENERDQPVMLHRAILGSFERFIGILIEHYAGFMPPWLSPVQACVMNITDSQAEASEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGKNLGTMSVDAFIDLVKSAVAER 634          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_ACIBC (Threonyl-tRNA synthetase OS=Acinetobacter baumannii (strain ACICU) GN=thrS PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.228e-48
Identity = 94/177 (53.11%), Postives = 121/177 (68.36%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRA-EICHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GAFYGPKI+  ++D LGR WQC TIQ DFNLP R D  YV   +E+ +P+M+HRA+LGS ERF G+LIEHYAG  P WLSP+QA V+ +TD+Q E   +V+ KLK NG+RA      E++   IR    ++IP + V+G +EV+  TV VR+R G  LGTM VD FI  +KSA   R
Sbjct:  458 GAFYGPKIEFSLKDCLGRVWQCGTIQCDFNLPVRLDASYVTEENERDQPVMLHRAILGSFERFIGILIEHYAGFMPPWLSPVQACVMNITDSQAEASEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGKNLGTMSVDAFIDLVKSAVAER 634          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_ACIB5 (Threonyl-tRNA synthetase OS=Acinetobacter baumannii (strain AB0057) GN=thrS PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.228e-48
Identity = 94/177 (53.11%), Postives = 121/177 (68.36%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRA-EICHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GAFYGPKI+  ++D LGR WQC TIQ DFNLP R D  YV   +E+ +P+M+HRA+LGS ERF G+LIEHYAG  P WLSP+QA V+ +TD+Q E   +V+ KLK NG+RA      E++   IR    ++IP + V+G +EV+  TV VR+R G  LGTM VD FI  +KSA   R
Sbjct:  458 GAFYGPKIEFSLKDCLGRVWQCGTIQCDFNLPVRLDASYVTEENERDQPVMLHRAILGSFERFIGILIEHYAGFMPPWLSPVQACVMNITDSQAEASEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGKNLGTMSVDAFIDLVKSAVAER 634          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_ACIB3 (Threonyl-tRNA synthetase OS=Acinetobacter baumannii (strain AB307-0294) GN=thrS PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.228e-48
Identity = 94/177 (53.11%), Postives = 121/177 (68.36%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRA-EICHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GAFYGPKI+  ++D LGR WQC TIQ DFNLP R D  YV   +E+ +P+M+HRA+LGS ERF G+LIEHYAG  P WLSP+QA V+ +TD+Q E   +V+ KLK NG+RA      E++   IR    ++IP + V+G +EV+  TV VR+R G  LGTM VD FI  +KSA   R
Sbjct:  458 GAFYGPKIEFSLKDCLGRVWQCGTIQCDFNLPVRLDASYVTEENERDQPVMLHRAILGSFERFIGILIEHYAGFMPPWLSPVQACVMNITDSQAEASEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGKNLGTMSVDAFIDLVKSAVAER 634          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_DESVV (Threonyl-tRNA synthetase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=thrS PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.216e-48
Identity = 94/172 (54.65%), Postives = 121/172 (70.35%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKS 518
            GAFYGPKID+++ D +GR+WQCSTIQ DF LP+RFD+VYV  + E+ RP+M+HRA+LGSLERF GVLIE YAG FP WL+P+QAR+L VTD Q E+       L   GIR E     E+L   +R A+ +KIP + VVG KEV+A  V VR R G  LG   +D+ +S ++S
Sbjct:  457 GAFYGPKIDVRLMDCIGREWQCSTIQCDFTLPERFDLVYVGQDGERHRPVMVHRAILGSLERFIGVLIEQYAGAFPAWLAPVQARLLTVTDAQNEFVESARAALAKAGIRVEADVRNEKLGYKVREAQLEKIPYILVVGDKEVEAGGVNVRLRTGENLGLKSLDEVVSLLES 628          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_DESVH (Threonyl-tRNA synthetase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=thrS PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.216e-48
Identity = 94/172 (54.65%), Postives = 121/172 (70.35%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKS 518
            GAFYGPKID+++ D +GR+WQCSTIQ DF LP+RFD+VYV  + E+ RP+M+HRA+LGSLERF GVLIE YAG FP WL+P+QAR+L VTD Q E+       L   GIR E     E+L   +R A+ +KIP + VVG KEV+A  V VR R G  LG   +D+ +S ++S
Sbjct:  457 GAFYGPKIDVRLMDCIGREWQCSTIQCDFTLPERFDLVYVGQDGERHRPVMVHRAILGSLERFIGVLIEQYAGAFPAWLAPVQARLLTVTDAQNEFVESARAALAKAGIRVEADVRNEKLGYKVREAQLEKIPYILVVGDKEVEAGGVNVRLRTGENLGLKSLDEVVSLLES 628          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_FINM2 (Threonyl-tRNA synthetase OS=Finegoldia magna (strain ATCC 29328) GN=thrS PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.506e-48
Identity = 86/177 (48.59%), Postives = 124/177 (70.06%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GAFYGPKID  +EDA+GR WQC TIQ+DF +P+RFD+ Y+ S+  KKRP MIHRA+LGS ERF G+LIEHYAG FPLWLSP+Q  +LP++D   +Y  E+ +K+K  G+R ++    E++   IR ++ +K+    ++G  E+D   V+VR R  G++G+   D+FI+ +    +NR
Sbjct:  457 GAFYGPKIDFHLEDAIGRTWQCGTIQLDFQMPERFDMTYIASDGSKKRPAMIHRAILGSEERFMGILIEHYAGKFPLWLSPVQVEILPISDKFNDYAYELQQKMKARGLRVKVDDRSEKIGLKIRESQLKKVNYSLIIGQNEIDNNEVSVRKRDIGDVGSKNTDEFINELVDEYQNR 633          
The following BLAST results are available for this feature:
BLAST of EH406265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_ACIF23.228e-4855.76Threonyl-tRNA synthetase OS=Acidithiobacillus ferr... [more]
SYT_ACIBY3.228e-4853.11Threonyl-tRNA synthetase OS=Acinetobacter baumanni... [more]
SYT_ACIBT3.228e-4853.11Threonyl-tRNA synthetase OS=Acinetobacter baumanni... [more]
SYT_ACIBS3.228e-4853.11Threonyl-tRNA synthetase OS=Acinetobacter baumanni... [more]
SYT_ACIBC3.228e-4853.11Threonyl-tRNA synthetase OS=Acinetobacter baumanni... [more]
SYT_ACIB53.228e-4853.11Threonyl-tRNA synthetase OS=Acinetobacter baumanni... [more]
SYT_ACIB33.228e-4853.11Threonyl-tRNA synthetase OS=Acinetobacter baumanni... [more]
SYT_DESVV4.216e-4854.65Threonyl-tRNA synthetase OS=Desulfovibrio vulgaris... [more]
SYT_DESVH4.216e-4854.65Threonyl-tRNA synthetase OS=Desulfovibrio vulgaris... [more]
SYT_FINM25.506e-4848.59Threonyl-tRNA synthetase OS=Finegoldia magna (stra... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BG09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406265 ID=EH406265; Name=EH406265; organism=Citrus clementina; type=EST; length=737bp
GTGGTGGTGCGTTTTATGGTCCAAAGATTGATCTTAAGATTGAGGATGCT
CTTGGAAGGAAGTGGCAGTGCTCAACCATACAGGTTGATTTCAATTTACC
ACAGCGATTTGACATTGTGTATGTTGACTCAAACTCAGAAAAGAAGCGTC
CCATCATGATCCACAGAGCAGTGCTTGGATCCTTGGAACGTTTCTTTGGA
GTTCTAATAGAGCATTATGCTGGGGATTTTCCTTTGTGGCTTTCTCCAAT
CCAAGCTCGTGTTTTACCAGTTACAGACACACAGCTTGAGTACTGTAATG
AGGTGATAAAAAAACTGAAAACTAATGGTATACGAGCTGAAATTTGCCAT
GGTGAGCGCCTGCCTAAGCTCATTAGAAATGCAGAGAAACAGAAAATTCC
ATTAATGGCAGTCGTTGGAGCTAAGGAAGTTGATGCACAAACTGTTACAG
TCAGATCTAGGTTTGGTGGAGAGCTTGGGACCATGAAAGTTGATGATTTT
ATCAGCAGAATCAAGTCTGCCACTGAAAACAGAACTACAATGTAAAGTTC
TTTGAAATTCTTAGACATGATATTTTTACAGGGATTTGAATACATACGAT
TTTCATTAGATAGCGACATTTTTTTACTCGTAAATTTATCTACTTGAGAA
ACTAAATATTTCTAATTTATGGTTGTAGCCTGTGTACAATAATTTTAGTT
TCTATTTTTCCTAATAAGCAAATAAATATCTGTTTAT
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