EH406265

Overview
NameEH406265
Unique NameEH406265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_DICNV (Threonyl-tRNA synthetase OS=Dichelobacter nodosus (strain VCS1703A) GN=thrS PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.569e-47
Identity = 85/178 (47.75%), Postives = 124/178 (69.66%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 536
            GAFYGPKI+  ++D+LGR+WQC T+Q+DF++P R    Y+D + EK+ P+MIHRA+LGSLERF G+LIE YAG+ P+WLSP+QA ++P+TDT  +Y   V++K    GIRAEI    E++   IR    Q++P + V G +E  + T++VR+R G ELG M++   I  I+   E ++
Sbjct:  459 GAFYGPKIEFTLKDSLGRRWQCGTVQLDFSMPARLGAEYIDEHGEKQTPVMIHRAILGSLERFIGILIEQYAGNMPVWLSPVQAMIMPITDTHADYVQNVMQKFIAAGIRAEIDLRNEKISYKIREHTLQRVPFLLVAGDREKQSNTLSVRTRDGKELGVMEIATIIEHIRHLIETKS 636          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_DESMR (Threonyl-tRNA synthetase OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=thrS PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.569e-47
Identity = 89/165 (53.94%), Postives = 119/165 (72.12%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDD 497
            GAFYGPKID+K++DAL R+WQC+TIQ DF LP+RFD+VY D++ E+KRP+M+HR +LG++ERF GVLIEH AG  P WLSP+QAR+L VTD Q E+  + + +LK  GIR E+    E+L   +R A+ +KIP M V G KE +   + VR R G  LG   +D+
Sbjct:  458 GAFYGPKIDIKLKDALDRRWQCATIQCDFTLPERFDLVYTDADGERKRPVMLHRVILGAVERFLGVLIEHTAGALPTWLSPVQARILIVTDAQKEFAEQALARLKEAGIRVELDDRNEKLGFKVREAQVEKIPYMLVAGDKEKELGGLNVRLRSGENLGVKTLDE 622          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_THETN (Threonyl-tRNA synthetase OS=Thermoanaerobacter tengcongensis GN=thrS PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.661e-47
Identity = 84/170 (49.41%), Postives = 124/170 (72.94%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRI 512
            GAFYGPKID  ++D++GR WQC TIQ+DF +P+RF++ Y+  + EK RPIM+HR + GS+ERF G+L EH+AG FP WL+P+Q RVLP+++   EY  +V ++L+ + IR E+    E++   IR A+ QKIP M +VG +EV+   V++RSR  G+LG + +D+FI +I
Sbjct:  466 GAFYGPKIDFHLKDSIGRTWQCGTIQLDFQMPERFELEYIGPDGEKHRPIMLHRVIYGSIERFIGILTEHFAGAFPTWLAPVQVRVLPISEKHHEYARKVYERLQEHDIRVELDDRNEKIGYKIREAQLQKIPYMLIVGDREVEEGNVSLRSRKDGDLGPISLDNFIEKI 635          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_DESAA (Threonyl-tRNA synthetase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=thrS PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.661e-47
Identity = 92/177 (51.98%), Postives = 122/177 (68.93%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GAFYGPKID+ I+DALGR WQC TIQ+D NLP+RFD+ YV +++++ RP+MIHR + GS+ERF G+LIEHYAG FPLWLSP QA VL + D    Y  EV  +L+  G+R EI    E + K +R+A+  KIPLM  VG KE  AQT+ VR+  G     + +D+F+ ++    E R
Sbjct:  453 GAFYGPKIDIHIKDALGRTWQCGTIQLDMNLPERFDLTYVGADNQRHRPVMIHRVIYGSIERFLGILIEHYAGKFPLWLSPCQAVVLAMNDDVAGYAKEVKARLEEAGLRMEIDLRAESINKKVRDAQLSKIPLMLTVGGKEEAAQTLAVRTLDGKVKYGVTIDNFLDKVLPHIETR 629          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CHLT3 (Threonyl-tRNA synthetase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=thrS PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.088e-47
Identity = 91/171 (53.22%), Postives = 126/171 (73.68%), Query Frame = 3
Query:    9 AFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEIC-HGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKS 518
            +FYGPKID  + DA+GRKWQ  T+QVD+ +P+RFD+ YV S+ +K RP++IHRA  GSLERF G+LIE++AG+FP+WLSP+Q  VLP+TD   +Y + V++KL   GIRAEI   GE++ K IR+AE +KIP M VVG KE+ A +V VR    G+ GTM + + I  +++
Sbjct:  481 SFYGPKIDFIVRDAIGRKWQLGTVQVDYVMPERFDLTYVGSDGQKHRPVVIHRAPFGSLERFIGILIENFAGNFPVWLSPVQVMVLPITDDFRDYAHSVLQKLLDAGIRAEIDERGEKVGKKIRDAEIKKIPYMFVVGEKEMAAASVAVRRHKEGDKGTMPLQEAIRLLQT 651          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_THET8 (Threonyl-tRNA synthetase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=thrS PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.951e-47
Identity = 91/166 (54.82%), Postives = 120/166 (72.29%), Query Frame = 3
Query:    9 AFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFI 503
            AFYGPK+D  ++DALGR+WQ  TIQVD+NLP+RF + YV  + E+ RP+M+HRA  GSLERF G+LIEH+AGDFPLWL+P+QA V+PV++ Q +Y  EV  +LK  G+RAE     ER+   IR+AE QK+P + VVG +E     V+VR R  G LGTM +  F+
Sbjct:  478 AFYGPKLDFVVKDALGREWQLGTIQVDYNLPERFGLTYVGKDGEEHRPVMLHRAPFGSLERFIGILIEHFAGDFPLWLAPVQAVVVPVSEKQEDYAREVAGRLKEAGLRAEADTRPERMQARIRDAEVQKVPYILVVGEREKAEGAVSVRRRKKGNLGTMPLAAFL 643          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_RHOOB (Threonyl-tRNA synthetase OS=Rhodococcus opacus (strain B4) GN=thrS PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.951e-47
Identity = 88/168 (52.38%), Postives = 122/168 (72.62%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFI 503
            G AFYGPKI ++++DALGR WQ STIQ+DFNLP+RFD+ Y  S+  KKRP+MIHRA+ GS+ERFFGVL EHYAG FP WL+P+Q   +PV +T  ++  +V+K+LK  G+RAE+    +R+ K I N   QK+P M + GA++V+A  V+ R R G ++  + VDD +
Sbjct:  492 GAAFYGPKISVQVQDALGRTWQMSTIQLDFNLPERFDLEYTASDGTKKRPVMIHRALFGSIERFFGVLTEHYAGAFPAWLAPVQVVGIPVAETFADHLFDVVKRLKAAGVRAEVDASDDRMQKKIFNNTAQKVPFMLLAGARDVEAGAVSFRFRDGTQVNGVPVDDAV 659          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_PETMO (Threonyl-tRNA synthetase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=thrS PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.951e-47
Identity = 86/177 (48.59%), Postives = 124/177 (70.06%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICHGE-RLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GAFYGPKID  + D+LGRKWQC+TIQ+DF +P+RFD+VY D N  +KRP+MIHRA+ GSLERFFG+LIE++AG+FP WLSP+Q  +LPV++   E   +  + L+  GIR  +   +  +   IRN + +K+P M V G KE+++ T+ +R+R G  +  +  + FI  IK+  +NR
Sbjct:  458 GAFYGPKIDFNVTDSLGRKWQCTTIQLDFQMPERFDMVYADENDAQKRPVMIHRAIFGSLERFFGILIENFAGEFPTWLSPVQVSILPVSEKFNEEAKKFSRILEQEGIRVYVNDSDATVGYKIRNEQMKKVPYMIVFGEKEMNSDTINIRTRKGDTIENVSKERFIEEIKNEIKNR 634          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_DESAD (Threonyl-tRNA synthetase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=thrS PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.951e-47
Identity = 89/175 (50.86%), Postives = 126/175 (72.00%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATE 527
            GAFYGPKID+ I+DAL R+WQC+TIQ DF LP+RFD+ YV  + E+ RP+M+HR +LGS+ERF GVL+EH  G  P WLSP+QA++L VTD+Q E+  +V++ L+  GIRAE+    E+L   +R A+ +KIP M V+G KEV A++V VR+R G + G   +++    I +A +
Sbjct:  455 GAFYGPKIDIIIKDALERRWQCATIQCDFTLPERFDLSYVGEDGERHRPVMLHRVILGSIERFIGVLLEHTGGALPAWLSPVQAKILTVTDSQNEFAQKVLQFLREKGIRAEVDDRNEKLGYKVREAQLEKIPYMLVIGDKEVAAESVNVRARDGEDPGLKSLEEAAELISTAID 629          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CAMC5 (Threonyl-tRNA synthetase OS=Campylobacter curvus (strain 525.92) GN=thrS PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.951e-47
Identity = 86/172 (50.00%), Postives = 125/172 (72.67%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEIC-HGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIK 515
            GGAFYGPKID+KI DAL RKWQC TIQVDFNLP+RFD+ Y+D+N+E++RP+M+HRA+LGS ERF G+LIEH AG+ P +++P Q  ++P++D  L+Y  E+ ++L+   I +E+    E L K IR AEKQ++P++ V+G  EV  ++V +R R       M + +F++  K
Sbjct:  427 GGAFYGPKIDIKITDALKRKWQCGTIQVDFNLPERFDLGYIDANNERQRPVMLHRALLGSFERFIGILIEHTAGELPFFIAPTQVVIVPISDAHLDYAKEIARELRKFNIDSEVASKNESLNKRIRTAEKQRVPMIIVLGDNEVANRSVALRDRQARTQSDMSLAEFLNLTK 598          
The following BLAST results are available for this feature:
BLAST of EH406265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_DICNV3.569e-4747.75Threonyl-tRNA synthetase OS=Dichelobacter nodosus ... [more]
SYT_DESMR3.569e-4753.94Threonyl-tRNA synthetase OS=Desulfovibrio magnetic... [more]
SYT_THETN4.661e-4749.41Threonyl-tRNA synthetase OS=Thermoanaerobacter ten... [more]
SYT_DESAA4.661e-4751.98Threonyl-tRNA synthetase OS=Desulfatibacillum alke... [more]
SYT_CHLT36.088e-4753.22Threonyl-tRNA synthetase OS=Chloroherpeton thalass... [more]
SYT_THET87.951e-4754.82Threonyl-tRNA synthetase OS=Thermus thermophilus (... [more]
SYT_RHOOB7.951e-4752.38Threonyl-tRNA synthetase OS=Rhodococcus opacus (st... [more]
SYT_PETMO7.951e-4748.59Threonyl-tRNA synthetase OS=Petrotoga mobilis (str... [more]
SYT_DESAD7.951e-4750.86Threonyl-tRNA synthetase OS=Desulfovibrio salexige... [more]
SYT_CAMC57.951e-4750.00Threonyl-tRNA synthetase OS=Campylobacter curvus (... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BG09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406265 ID=EH406265; Name=EH406265; organism=Citrus clementina; type=EST; length=737bp
GTGGTGGTGCGTTTTATGGTCCAAAGATTGATCTTAAGATTGAGGATGCT
CTTGGAAGGAAGTGGCAGTGCTCAACCATACAGGTTGATTTCAATTTACC
ACAGCGATTTGACATTGTGTATGTTGACTCAAACTCAGAAAAGAAGCGTC
CCATCATGATCCACAGAGCAGTGCTTGGATCCTTGGAACGTTTCTTTGGA
GTTCTAATAGAGCATTATGCTGGGGATTTTCCTTTGTGGCTTTCTCCAAT
CCAAGCTCGTGTTTTACCAGTTACAGACACACAGCTTGAGTACTGTAATG
AGGTGATAAAAAAACTGAAAACTAATGGTATACGAGCTGAAATTTGCCAT
GGTGAGCGCCTGCCTAAGCTCATTAGAAATGCAGAGAAACAGAAAATTCC
ATTAATGGCAGTCGTTGGAGCTAAGGAAGTTGATGCACAAACTGTTACAG
TCAGATCTAGGTTTGGTGGAGAGCTTGGGACCATGAAAGTTGATGATTTT
ATCAGCAGAATCAAGTCTGCCACTGAAAACAGAACTACAATGTAAAGTTC
TTTGAAATTCTTAGACATGATATTTTTACAGGGATTTGAATACATACGAT
TTTCATTAGATAGCGACATTTTTTTACTCGTAAATTTATCTACTTGAGAA
ACTAAATATTTCTAATTTATGGTTGTAGCCTGTGTACAATAATTTTAGTT
TCTATTTTTCCTAATAAGCAAATAAATATCTGTTTAT
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