EH406265

Overview
NameEH406265
Unique NameEH406265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CAMC1 (Threonyl-tRNA synthetase OS=Campylobacter concisus (strain 13826) GN=thrS PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.038e-46
Identity = 85/172 (49.42%), Postives = 125/172 (72.67%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEIC-HGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIK 515
            GGAFYGPKID+KI DAL RKWQC TIQVDFNLP+RFD+ Y+D+N+E++RP+M+HRA+LGS ERF G+L+EH AG+ P +++P Q  ++P++D  L+Y  E+ ++L+   + +EI    E L K IR AEKQ++P++ V+G  EV  ++V +R R       M + +F++  K
Sbjct:  427 GGAFYGPKIDIKITDALKRKWQCGTIQVDFNLPERFDLGYIDANNERQRPVMLHRALLGSFERFIGILLEHTAGELPFFIAPTQVVIVPISDAHLDYAKEISRELRKINVDSEIASKNESLNKRIRTAEKQRVPMIVVLGDNEVANKSVALRDRQARTQSDMSLAEFVNLTK 598          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_STRAW (Threonyl-tRNA synthetase OS=Streptomyces avermitilis GN=thrS PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.356e-46
Identity = 85/179 (47.49%), Postives = 123/179 (68.72%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 536
            G AFYGPKI ++ +DA+GR WQ ST+Q+DFNLP+RFD+ Y   +  K+RP+MIHRA+ GS+ERFF VL+EHYAG FP WL+P+QA  +P+ D  +EY  +   + K  G+R E+    +R+ K IRNA+KQK+P M + G +++ A  V+ R R G +   + +D+ I++I    E RT
Sbjct:  478 GAAFYGPKISVQAKDAIGRTWQMSTVQLDFNLPERFDLEYTGPDGSKQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAPVQAVGIPIGDAHVEYLQKFAAEAKKKGLRVEVDSSSDRMQKKIRNAQKQKVPFMVIAGDEDMTAGAVSFRYRDGSQENGIPLDEAIAKIAKVVEERT 656          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_KOSOT (Threonyl-tRNA synthetase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=thrS PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.356e-46
Identity = 82/177 (46.33%), Postives = 125/177 (70.62%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICHGERLPKL-IRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GAFYGPKID  + D++GR+WQC+TIQ+DF +P+RF++ YV  ++++ RP+MIHRA+ GSL+RFFG+LIEHYAG FP WL+P+Q   +P++D  ++Y  EV   L   G+R ++   ++     IR A+  KIP M ++G KE +++T+TVR R G  +  MK+ +F +++K    NR
Sbjct:  461 GAFYGPKIDFHVTDSIGREWQCATIQLDFMMPERFELTYVGPDNKEYRPVMIHRAIYGSLDRFFGILIEHYAGAFPTWLAPVQVVAIPISDKHVDYAREVADALAAEGVRVDVDEKQKSTNYKIREAQLNKIPYMLILGDKEKESETITVRLRTGKNIYGMKLAEFSAKLKEEISNR 637          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_PELCD (Threonyl-tRNA synthetase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=thrS PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.771e-46
Identity = 90/166 (54.22%), Postives = 115/166 (69.28%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDF 500
            GAFYGPKID+K++DAL R+WQC+TIQ DF LP+RFD+ YV  + EK RP+M+HR +LG++ERF GVLIEHYAG+FPLWL+P+QA V+ VTD Q +Y   V   L+  G+R +     E+L   IR A+  KIP M VVG  E+   TV  R R G  L  M  +DF
Sbjct:  461 GAFYGPKIDIKLKDALDRRWQCATIQCDFTLPERFDLTYVGKDGEKHRPVMLHRVILGAIERFIGVLIEHYAGNFPLWLAPVQAVVINVTDNQADYAKSVSDALRAAGVRVQCDLRNEKLGFKIREAQVDKIPYMLVVGDTEMSDGTVAPRFRSGKNLEPMSPEDF 626          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CAMLR (Threonyl-tRNA synthetase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=thrS PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.771e-46
Identity = 89/172 (51.74%), Postives = 122/172 (70.93%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIK 515
            GGAFYGPKID+KI DAL RKWQC TIQVDFNLP RF + Y D+++EKK+P+M+HRA+LGS ERF G+LIEH AG+ P +++P Q  ++P++    EY  E+ KKL   GI +E+    E L K IR AEK  +P++ V+G +EV  ++V +R R   E  T+ +D+FI+  K
Sbjct:  424 GGAFYGPKIDIKITDALKRKWQCGTIQVDFNLPSRFKLEYTDADNEKKQPVMLHRAILGSFERFIGILIEHCAGELPFFIAPTQVAIVPISQNHHEYAKEIAKKLLELGIDSEVYSKNESLNKKIRTAEKAHVPMILVLGDEEVANKSVALRDRRAKEQKTLTLDEFITLTK 595          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_THET2 (Threonyl-tRNA synthetase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=thrS PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.313e-46
Identity = 91/166 (54.82%), Postives = 119/166 (71.69%), Query Frame = 3
Query:    9 AFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFI 503
            AFYGPK+D  ++DALGR+WQ  TIQVD+NLP+RF + YV  + E+ RP+M+HRA  GSLERF G+LIEH+AGDFPLWL+P+QA V+PV++ Q  Y  EV  +LK  G+RAE     ER+   IR+AE QK+P + VVG +E     V+VR R  G LGTM +  F+
Sbjct:  478 AFYGPKLDFVVKDALGREWQLGTIQVDYNLPERFGLTYVGKDGEEHRPVMLHRAPFGSLERFIGILIEHFAGDFPLWLAPVQAVVVPVSEKQEGYAREVAGRLKEAGLRAEADTRPERMQARIRDAEVQKVPYVLVVGEREKAEGAVSVRRRKKGNLGTMPLAAFL 643          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_ALHEH (Threonyl-tRNA synthetase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=thrS PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.946e-46
Identity = 90/172 (52.33%), Postives = 118/172 (68.60%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKS 518
            GAFYGPKI+  ++D LGR WQ  TIQVDF++P R    YV  +  KK P+M+HRA+LGSLERF G+LIEHYAG  P WL+P+QA VL +TD Q EY   + K+ +  G+R +     E++   IR    QK+P M VVG KEV+  TV VR+R G +LG+M VDDF+ R++S
Sbjct:  458 GAFYGPKIEFTLKDCLGRTWQLGTIQVDFSMPGRLGATYVAEDGSKKVPVMLHRAILGSLERFIGILIEHYAGALPPWLAPVQAVVLNITDRQGEYARRIEKRFRERGLRVDADLRNEKIGFKIREHTLQKVPYMLVVGDKEVENNTVAVRTREGQDLGSMAVDDFLQRLES 629          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_RHOSR (Threonyl-tRNA synthetase OS=Rhodococcus sp. (strain RHA1) GN=thrS PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.154e-46
Identity = 86/168 (51.19%), Postives = 122/168 (72.62%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFI 503
            G AFYGPKI ++++DALGR WQ STIQ+DFNLP+RFD+ Y  ++  K+RP+MIHRA+ GS+ERFFGVL EHYAG FP WL+P+Q   +PV +T  ++  +V+K+LK  G+RAE+    +R+ K I N   QK+P M + GA++V+A  V+ R R G ++  + VDD +
Sbjct:  492 GAAFYGPKISVQVQDALGRTWQMSTIQLDFNLPERFDLEYTANDGTKQRPVMIHRALFGSIERFFGVLTEHYAGAFPAWLAPVQVVGIPVAETFADHLFDVVKRLKAAGVRAEVDASDDRMQKKIFNNTAQKVPFMLLAGARDVEAGAVSFRFRDGTQVNGVPVDDAV 659          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_FRATN (Threonyl-tRNA synthetase OS=Francisella tularensis subsp. novicida (strain U112) GN=thrS PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.154e-46
Identity = 81/166 (48.80%), Postives = 118/166 (71.08%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDF 500
            GAFYGPKI+  ++DA+GR WQC TIQ+DF++PQR    Y+D N EK+ P+M+HRA++GSLERF G+LIEHYAG+ PLWL+P+Q  V+ +++ Q +YC EV   L+ NGIRA++    E++   IR     ++P + ++G  E + + +T+R   G +LG M VDDF
Sbjct:  457 GAFYGPKIEFHLKDAIGRSWQCGTIQLDFSMPQRLGATYIDKNGEKQVPVMLHRAIVGSLERFIGMLIEHYAGNLPLWLAPVQVAVMGISNNQDDYCKEVFTMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIRKHSGEDLGQMSVDDF 622          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_MARAV (Threonyl-tRNA synthetase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=thrS PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.791e-46
Identity = 89/177 (50.28%), Postives = 115/177 (64.97%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GAFYGPKI+  ++D LGR WQC TIQVDF++P R    YV  NSE+K P+M+HRAVLGS ERF G+LIE Y G FP WL+P Q  VL +TD Q +YC  + KKL ++G R       E++   IR     K+P + VVG KE++   V VR+R G +LGTM VDDF   + +  E +
Sbjct:  458 GAFYGPKIEFSLKDCLGRVWQCGTIQVDFSMPGRLGAQYVADNSERKTPVMLHRAVLGSFERFIGILIEEYEGAFPTWLAPTQVAVLNITDKQRDYCQNLAKKLDSSGYRVNADLRNEKIGFKIREHTLNKVPYLVVVGDKEIENNAVAVRTRKGEDLGTMSVDDFEKLLAADVERK 634          
The following BLAST results are available for this feature:
BLAST of EH406265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_CAMC11.038e-4649.42Threonyl-tRNA synthetase OS=Campylobacter concisus... [more]
SYT_STRAW1.356e-4647.49Threonyl-tRNA synthetase OS=Streptomyces avermitil... [more]
SYT_KOSOT1.356e-4646.33Threonyl-tRNA synthetase OS=Kosmotoga olearia (str... [more]
SYT_PELCD1.771e-4654.22Threonyl-tRNA synthetase OS=Pelobacter carbinolicu... [more]
SYT_CAMLR1.771e-4651.74Threonyl-tRNA synthetase OS=Campylobacter lari (st... [more]
SYT_THET22.313e-4654.82Threonyl-tRNA synthetase OS=Thermus thermophilus (... [more]
SYT_ALHEH3.946e-4652.33Threonyl-tRNA synthetase OS=Alkalilimnicola ehrlic... [more]
SYT_RHOSR5.154e-4651.19Threonyl-tRNA synthetase OS=Rhodococcus sp. (strai... [more]
SYT_FRATN5.154e-4648.80Threonyl-tRNA synthetase OS=Francisella tularensis... [more]
SYT_MARAV8.791e-4650.28Threonyl-tRNA synthetase OS=Marinobacter aquaeolei... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BG09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406265 ID=EH406265; Name=EH406265; organism=Citrus clementina; type=EST; length=737bp
GTGGTGGTGCGTTTTATGGTCCAAAGATTGATCTTAAGATTGAGGATGCT
CTTGGAAGGAAGTGGCAGTGCTCAACCATACAGGTTGATTTCAATTTACC
ACAGCGATTTGACATTGTGTATGTTGACTCAAACTCAGAAAAGAAGCGTC
CCATCATGATCCACAGAGCAGTGCTTGGATCCTTGGAACGTTTCTTTGGA
GTTCTAATAGAGCATTATGCTGGGGATTTTCCTTTGTGGCTTTCTCCAAT
CCAAGCTCGTGTTTTACCAGTTACAGACACACAGCTTGAGTACTGTAATG
AGGTGATAAAAAAACTGAAAACTAATGGTATACGAGCTGAAATTTGCCAT
GGTGAGCGCCTGCCTAAGCTCATTAGAAATGCAGAGAAACAGAAAATTCC
ATTAATGGCAGTCGTTGGAGCTAAGGAAGTTGATGCACAAACTGTTACAG
TCAGATCTAGGTTTGGTGGAGAGCTTGGGACCATGAAAGTTGATGATTTT
ATCAGCAGAATCAAGTCTGCCACTGAAAACAGAACTACAATGTAAAGTTC
TTTGAAATTCTTAGACATGATATTTTTACAGGGATTTGAATACATACGAT
TTTCATTAGATAGCGACATTTTTTTACTCGTAAATTTATCTACTTGAGAA
ACTAAATATTTCTAATTTATGGTTGTAGCCTGTGTACAATAATTTTAGTT
TCTATTTTTCCTAATAAGCAAATAAATATCTGTTTAT
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