EH406265

Overview
NameEH406265
Unique NameEH406265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CAMJE (Threonyl-tRNA synthetase OS=Campylobacter jejuni GN=thrS PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.558e-45
Identity = 87/172 (50.58%), Postives = 120/172 (69.77%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIK 515
            GGAFYGPKID+KI DAL RKWQC TIQVDFNLP RF + Y DS++EKK+P+M+HRA+LGS ERF G+L EH AG+FP +++P    ++P+ +  + Y  E+ K+L    I +E+    E L K IR AEKQK+P++ V+G  EV  ++V +R R   E   + +D+FI  +K
Sbjct:  423 GGAFYGPKIDIKITDALKRKWQCGTIQVDFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVGIVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALRDRRAKEQKNLSLDEFIKLVK 594          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CAMJD (Threonyl-tRNA synthetase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=thrS PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.558e-45
Identity = 87/172 (50.58%), Postives = 120/172 (69.77%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIK 515
            GGAFYGPKID+KI DAL RKWQC TIQVDFNLP RF + Y DS++EKK+P+M+HRA+LGS ERF G+L EH AG+FP +++P    ++P+ +  + Y  E+ K+L    I +E+    E L K IR AEKQK+P++ V+G  EV  ++V +R R   E   + +D+FI  +K
Sbjct:  423 GGAFYGPKIDIKITDALKRKWQCGTIQVDFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVGIVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALRDRRAKEQKNLSLDEFIKLVK 594          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_ARTCA (Threonyl-tRNA synthetase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=thrS PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.558e-45
Identity = 88/180 (48.89%), Postives = 122/180 (67.78%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRTT 539
            G AFYGPKI ++ +DALGR WQ STIQ+DFNLP+RF++ +  ++  ++RP+MIHRA+ GS+ERF GVL EHYAG FP WL+P+Q   +PV +T  EY  +V+ +LK  GIRAE+    +R PK IR A K KIP + + G  + +A  V+ R R G +   + V + + RI  A  NRT+
Sbjct:  490 GAAFYGPKISVQAKDALGRTWQMSTIQLDFNLPERFELEFQAADGSRQRPVMIHRALFGSVERFMGVLTEHYAGAFPAWLAPVQVVGIPVAETFNEYMFDVVDQLKAAGIRAEVDTSSDRFPKKIRTASKDKIPFVLIAGGDDAEAGAVSFRFRDGSQDNGVPVAEAVKRITEAVRNRTS 669          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_DESAH (Threonyl-tRNA synthetase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=thrS PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.363e-45
Identity = 85/167 (50.90%), Postives = 120/167 (71.86%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFI 503
            GAFYGPKID+ I+DALGR WQC T+Q+D  LP+RFD+ Y  +++EK RPIMIHR + GS+ERFFG+L+EH+AG FPLWL+P+QA VLP+ D   ++   V K+L++NGIR ++    E L K IR A+   +PL+  +G KE ++ T++VR+  G     + + DFI
Sbjct:  453 GAFYGPKIDIHIKDALGRTWQCGTVQLDMALPERFDLTYKGADNEKHRPIMIHRVIYGSIERFFGILVEHFAGKFPLWLAPVQAVVLPINDDLADHAQTVKKELESNGIRCDVDLRTESLKKKIREAQVNYVPLIITIGEKEKESGTLSVRTLDGKVRMGLSMADFI 619          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CAMJJ (Threonyl-tRNA synthetase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=thrS PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.363e-45
Identity = 86/172 (50.00%), Postives = 120/172 (69.77%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIK 515
            GGAFYGPKID+KI DAL RKWQC T+QVDFNLP RF + Y DS++EKK+P+M+HRA+LGS ERF G+L EH AG+FP +++P    ++P+ +  + Y  E+ K+L    I +E+    E L K IR AEKQK+P++ V+G  EV  ++V +R R   E   + +D+FI  +K
Sbjct:  423 GGAFYGPKIDIKITDALKRKWQCGTVQVDFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVGIVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVVKRSVALRDRRAKEQKNLSLDEFIKLVK 594          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_SULTO (Threonyl-tRNA synthetase OS=Sulfolobus tokodaii GN=thrS PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.698e-45
Identity = 87/177 (49.15%), Postives = 116/177 (65.54%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GAFYGPKID  I D+LGR WQ STIQVDFNLP+RF + Y+D +  +KRP+MIHRA+ GS+ERF  +L+EH+ G  P WLSP+Q R+LP++    +Y   ++ KLK N IR E+    E L K I+ A  + +P M +VG KE +   VTVR R   E+  +K DDF+  +     NR
Sbjct:  353 GAFYGPKIDFDIRDSLGRWWQLSTIQVDFNLPERFKLEYIDKDGSRKRPVMIHRAIYGSIERFMAILLEHFRGKLPTWLSPVQVRILPISKDVEDYALNLLSKLKENKIRVELDMSDETLSKRIKKAYDEGVPYMIIVGKKEREEGKVTVRGRNNVEIRGVKFDDFLKALLEEIRNR 529          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_LARHH (Threonyl-tRNA synthetase OS=Laribacter hongkongensis (strain HLHK9) GN=thrS PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.698e-45
Identity = 86/172 (50.00%), Postives = 114/172 (66.28%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKS 518
            GAFYGPKI+  ++D LGR WQC T+Q+DFNLP R    YV  ++ KK P+M+HRA+LGSLERF G+LIEH+AG  PLWL+P+Q  VL +T+ Q EY  EV + LK  G R ++    E++   IR    QK+P   +VG KE     V VR+R G +LG + +  FI R+KS
Sbjct:  458 GAFYGPKIEFSLKDCLGRVWQCGTLQLDFNLPVRLGAEYVSEDNAKKHPVMLHRAILGSLERFIGILIEHHAGAMPLWLAPVQMAVLNITEAQAEYATEVAETLKKQGFRVDLDLRNEKISYKIREHSLQKLPYQIIVGDKEKAGALVAVRARTGEDLGQIPLSQFIERLKS 629          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_DESVM (Threonyl-tRNA synthetase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=thrS PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.698e-45
Identity = 89/172 (51.74%), Postives = 118/172 (68.60%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKS 518
            GAFYGPKID+K+ DA+GR+WQ STIQVDF LP RFD+VY+  + E+ RP+M+HRA+LGSLERF GVL EH+AG FP W+ P+QAR+L VTD Q ++      +L   G+R E     E+L   +R A+ +KIP + VVG KEV+A  V VR R G  LG   + +    I++
Sbjct:  457 GAFYGPKIDIKVTDAIGREWQLSTIQVDFTLPDRFDLVYIGQDGERHRPVMVHRAILGSLERFIGVLTEHFAGAFPTWIVPVQARLLTVTDAQNDFAMGARDQLVAAGLRVEADTRNEKLGYKVREAQLEKIPYILVVGDKEVEAGGVNVRLRNGENLGLKTLAEVAEMIRA 628          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_STRGG (Threonyl-tRNA synthetase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=thrS PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.442e-45
Identity = 82/178 (46.07%), Postives = 121/178 (67.98%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            G AFYGPKI ++ +DA+GR WQ ST+Q+DFNLP+RFD+ Y   +  K+RP+MIHRA+ GS+ERFF VL+EHYAG FP+WL+P+QA  +P+ D  + Y  E   K +  G+R ++    +R+ K IRN +K K+P M + G +++    V+ R R G +   + VD+ I++I  A E+R
Sbjct:  478 GAAFYGPKISVQCKDAIGRTWQMSTVQLDFNLPERFDLEYTGPDGSKQRPVMIHRALFGSIERFFAVLLEHYAGAFPVWLAPVQAVGIPIGDAHIPYLQEFAAKARKQGLRVDVDASSDRMQKKIRNQQKNKVPFMIIAGDEDMANGAVSFRYRDGSQENGIPVDEAIAKIAKAVEDR 655          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_METFK (Threonyl-tRNA synthetase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=thrS PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.442e-45
Identity = 82/172 (47.67%), Postives = 120/172 (69.77%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKS 518
            GAFYGPKI+  ++D+LGR WQC TIQ+DFNLP+R    YVD ++ +K P+M+HRA++GS+ERF G+LIE+YAG  P WL+P+QA VL ++D Q +Y + V+ +L+ NG R +     E++   IR    QK+P + + G +E+    V VR+R G +LG+M +  FI R+KS
Sbjct:  458 GAFYGPKIEFTLKDSLGRLWQCGTIQLDFNLPERLGAEYVDEDNSRKHPVMLHRAIVGSMERFLGILIENYAGAMPAWLAPVQAMVLNISDGQADYVSSVVAELRKNGFRVDSDLRNEKITYKIREHSLQKLPYLLIAGEREMQTGQVAVRTRKGEDLGSMPLSAFIERLKS 629          
The following BLAST results are available for this feature:
BLAST of EH406265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_CAMJE2.558e-4550.58Threonyl-tRNA synthetase OS=Campylobacter jejuni G... [more]
SYT_CAMJD2.558e-4550.58Threonyl-tRNA synthetase OS=Campylobacter jejuni s... [more]
SYT_ARTCA2.558e-4548.89Threonyl-tRNA synthetase OS=Arthrobacter chlorophe... [more]
SYT_DESAH4.363e-4550.90Threonyl-tRNA synthetase OS=Desulfobacterium autot... [more]
SYT_CAMJJ4.363e-4550.00Threonyl-tRNA synthetase OS=Campylobacter jejuni s... [more]
SYT_SULTO5.698e-4549.15Threonyl-tRNA synthetase OS=Sulfolobus tokodaii GN... [more]
SYT_LARHH5.698e-4550.00Threonyl-tRNA synthetase OS=Laribacter hongkongens... [more]
SYT_DESVM5.698e-4551.74Threonyl-tRNA synthetase OS=Desulfovibrio vulgaris... [more]
SYT_STRGG7.442e-4546.07Threonyl-tRNA synthetase OS=Streptomyces griseus s... [more]
SYT_METFK7.442e-4547.67Threonyl-tRNA synthetase OS=Methylobacillus flagel... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BG09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406265 ID=EH406265; Name=EH406265; organism=Citrus clementina; type=EST; length=737bp
GTGGTGGTGCGTTTTATGGTCCAAAGATTGATCTTAAGATTGAGGATGCT
CTTGGAAGGAAGTGGCAGTGCTCAACCATACAGGTTGATTTCAATTTACC
ACAGCGATTTGACATTGTGTATGTTGACTCAAACTCAGAAAAGAAGCGTC
CCATCATGATCCACAGAGCAGTGCTTGGATCCTTGGAACGTTTCTTTGGA
GTTCTAATAGAGCATTATGCTGGGGATTTTCCTTTGTGGCTTTCTCCAAT
CCAAGCTCGTGTTTTACCAGTTACAGACACACAGCTTGAGTACTGTAATG
AGGTGATAAAAAAACTGAAAACTAATGGTATACGAGCTGAAATTTGCCAT
GGTGAGCGCCTGCCTAAGCTCATTAGAAATGCAGAGAAACAGAAAATTCC
ATTAATGGCAGTCGTTGGAGCTAAGGAAGTTGATGCACAAACTGTTACAG
TCAGATCTAGGTTTGGTGGAGAGCTTGGGACCATGAAAGTTGATGATTTT
ATCAGCAGAATCAAGTCTGCCACTGAAAACAGAACTACAATGTAAAGTTC
TTTGAAATTCTTAGACATGATATTTTTACAGGGATTTGAATACATACGAT
TTTCATTAGATAGCGACATTTTTTTACTCGTAAATTTATCTACTTGAGAA
ACTAAATATTTCTAATTTATGGTTGTAGCCTGTGTACAATAATTTTAGTT
TCTATTTTTCCTAATAAGCAAATAAATATCTGTTTAT
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