FC868536

Overview
NameFC868536
Unique NameFC868536
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10208 contig Ccv1_Contig10208:413..1098. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868536 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 64/222 (28.83%), Postives = 104/222 (46.85%), Query Frame = 1
Query:   34 NTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHI-PGPEGVRGRNSDNTLIKEKLGWAPSMKXKDGLR--ITYF 678
            NT+ + NML  ++  G  R   AS++ +Y +       V  +  D W    P  P+  Y   K  +E +C  Y K  G+E RV R  N +GP      GR    + F  +AL   +   ++G G QTR+F ++ + V G++ L  S+   PVN+G+ E  ++ E A+++ +       I  +    +  + R  D    K  LGW P +  ++GL   I YF
Sbjct:  179 NTIGTLNMLGLAKRVGA-RLLLASTSEVYGD-----PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGR--VVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYF 391          
BLAST of FC868536 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 64/222 (28.83%), Postives = 104/222 (46.85%), Query Frame = 1
Query:   34 NTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHI-PGPEGVRGRNSDNTLIKEKLGWAPSMKXKDGLR--ITYF 678
            NT+ + NML  ++  G  R   AS++ +Y +       V  +  D W    P  P+  Y   K  +E +C  Y K  G+E RV R  N +GP      GR    + F  +AL   +   ++G G QTR+F ++ + V G++ L  S+   PVN+G+ E  ++ E A+++ +       I  +    +  + R  D    K  LGW P +  ++GL   I YF
Sbjct:  179 NTIGTLNMLGLAKRVGA-RLLLASTSEVYGD-----PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGR--VVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYF 391          
BLAST of FC868536 vs. ExPASy Swiss-Prot
Match: Y4AF_RHISN (Uncharacterized protein y4aF OS=Rhizobium sp. (strain NGR234) GN=NGR_a00420 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 66/225 (29.33%), Postives = 102/225 (45.33%), Query Frame = 1
Query:   25 MYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEP-QDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDK----FEMWGDGLQTRSFTFIDECVEGVLRLTKS-DFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPI-HHIPGPEGV-RGRNSDNTLIKEKLGWAPSMKXKDGLRITY 675
            +Y N ++  N++E S  SGV++  +  S+CIYP  K     +  +     P EP  + Y + K+A  +LC+ Y K +G         N+YGP   +         A  RKA  +  K      +WG G  TR F + ++C + ++ L K     E +NIGS   +S+ E+A IV      K  I      P+G  R   S   L+   +GW P    + GL  +Y
Sbjct:   84 IYQNLIMEANVIEGSFRSGVEKLLFLGSSCIYP--KYAAQPIREEALLTGPLEPTNEWYAIAKIAGIKLCQAYRKQYGANFISAMPTNLYGPRDKFDLNSSHVVPALIRKAHEAKIKDLGCLSIWGSGTPTRDFLYSEDCSDALVFLLKHYSETEHINIGSGGEISIIELAHIVCRVVGFKGDIVFDTSKPDGTPRKLLSSERLV--SMGWRPKTSLELGLAKSY 304          
BLAST of FC868536 vs. ExPASy Swiss-Prot
Match: FCL2_ARATH (Putative GDP-L-fucose synthase 2 OS=Arabidopsis thaliana GN=GER2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.148e-15
Identity = 61/225 (27.11%), Postives = 102/225 (45.33%), Query Frame = 1
Query:   34 NTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEP-QDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRK----ALTSTDKFEMWGDGLQTRSFTFIDECVEG-VLRLTKSDFREPVNIGSDEMVSMNEMAEI---VLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKXKDGLRITYFW 681
            N  I  N++ ++   GVK+  +  S+CIYP+F       S   +   P EP  + Y + K+A  ++C+ Y      +   G   N+YG    +         A  R+       + D+  +WG G   R F  +D+  +  V  + +    E VN+GS   V++ E+AE+   V+ F+ K   +     P+G   +  D++ +   LGW P +  KDGL  TY W
Sbjct:   99 NLQIQTNVIHSAYTHGVKKLLFLGSSCIYPKFAPQPIPESALLTG--PLEPTNEWYAIAKIAGIKMCQAYRLQHQWDAISGMPTNLYGQNDNFHPENSHVLPALMRRFHEAKANNADEVVVWGSGSPLREFLHVDDLADACVFLMDQYSGFEHVNVGSGVEVTIKELAELVKEVVGFKGKL--VWDTTKPDGTPRKLMDSSKL-ASLGWTPKISLKDGLSQTYEW 318          
BLAST of FC868536 vs. ExPASy Swiss-Prot
Match: FCL1_ORYSJ (Probable GDP-L-fucose synthase 1 OS=Oryza sativa subsp. japonica GN=Os06g0652400 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.240e-15
Identity = 62/228 (27.19%), Postives = 109/228 (47.81%), Query Frame = 1
Query:   34 NTMISFNMLEAS-RISGVKRFFYASSACIYPEF--KQLETNVSLKESDAWPAEPQDA-YGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRK----ALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKS-DFREPVNIGSDEMVSMNEMAEIV---LSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKXKDGLRITYFW 681
            N  I  N+++A+ +   V++  +  S+CIYP+F  + +  N  L    + P EP +  Y + K+A  ++C+ Y    G +       N+YGP   +         A  R+      ++  +  +WG G   R F  +D+  + V+ L       E VN+GS   V++ E+AE+V   + F+ K   +     P+G   +  D++ I+E +GW P +  K+GL  TY W
Sbjct:   98 NLQIQTNVVDAALKCGSVRKLLFLGSSCIYPKFAPQPIPENSLL----SGPLEPTNEWYAVAKIAGIKMCQAYRIQHGFDAISAMPTNLYGPQDNFHPENSHVLPALIRRFHEAKASNAAEVVVWGTGSPLREFLHVDDLADAVIFLMDHYSGLEHVNVGSGSEVTIKELAELVKEVVGFQGKL--VWDSSKPDGTPRKLMDSSKIQE-MGWKPKVPLKEGLVETYKW 318          
BLAST of FC868536 vs. ExPASy Swiss-Prot
Match: UXS1_XENTR (UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 60/218 (27.52%), Postives = 101/218 (46.33%), Query Frame = 1
Query:   34 NTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHI-PGPEGVRGRNSDNTLIKEKLGWAPSMKXKDGLRIT 672
            NT+ + NML  ++  G  R   AS++ +Y +       V  +  + W    P  P+  Y   K  +E +C  Y K  G+E RV R  N +GP      GR    + F  +AL   ++  ++G G QTR+F ++ + V G++ L  S+   PVN+G+ +  S+ + A ++         I  +    +  + R  D    K  LGW P +  ++GL  T
Sbjct:  180 NTIGTLNMLGLAKRVGA-RLLLASTSEVYGD-----PEVHPQSEEYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGR--VVSNFILQALQG-EQLTVYGSGEQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPQEHSIVQFARLIKQLVGSGGEISFLSEAQDDPQRRKPDIRKAKLLLGWEPVVPLEEGLNKT 388          
BLAST of FC868536 vs. ExPASy Swiss-Prot
Match: GALE_METJA (Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii GN=MJ0211 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 62/221 (28.05%), Postives = 102/221 (46.15%), Query Frame = 1
Query:   34 NTMISFNMLEASRISGVKRFFYASSA-CIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIV---LSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKXKDGLRITYFWI 684
            N + + N+LE  R   + +  +ASS   +Y E   L  +      +  P  P   YGL K   EE  K Y + +GIE  + R+ N+YG     K G     + F  K L +     ++GDG QTR F ++ +  +  L +  +   E VNIG+ +  S+NE+ +I+   + F  + +   +    EG   R   +    E LGW P +  K+G++    W+
Sbjct:   91 NVLGTINILEMMRKYDIDKIVFASSGGAVYGEPNYLPVD------ENHPINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVYGERQDPK-GEAGVISIFIDKMLKNQSPI-IFGDGNQTRDFVYVGDVAKANL-MALNWKNEIVNIGTGKETSVNELFDIIKHEIGFRGEAI---YDKPREGEVYRIYLDIKKAESLGWKPEIDLKEGIKRVVNWM 299          
BLAST of FC868536 vs. ExPASy Swiss-Prot
Match: FCL_ECOLI (GDP-L-fucose synthetase OS=Escherichia coli (strain K12) GN=fcl PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 57/235 (24.26%), Postives = 100/235 (42.55%), Query Frame = 1
Query:   25 MYNNTMISFNMLEASRISGVKRFFYASSACIYPEF-KQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDK----FEMWGDGLQTRSFTFIDECVEG---VLRLTKSDFRE-------PVNIGSDEMVSMNEMAEIVLSFED-KKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKXKDGLRITYFW 681
            +Y N MI  N++ A+  + V +  +  S+CIYP+  KQ      L +    P    + Y + K+A  +LC+ Y + +G + R     N+YGP   +         A  R+   +T +      +WG G   R F  +D+       V+ L    + E        +N+G+    ++ E+A+ +      K   +     P+G   +  D T +  +LGW   +  + GL  TY W
Sbjct:   80 IYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPT--NEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRL-HQLGWYHEISLEAGLASTYQW 311          
BLAST of FC868536 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 56/219 (25.57%), Postives = 105/219 (47.95%), Query Frame = 1
Query:   31 NNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDF-REPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEG-VRGRNSDNTLIKEKLGWAPSMKXKDGLRITYFW 681
            +N M + N+ E +R   +++  YASS+ +Y   +++  +      D    +P   Y   K ++E +   Y   +GI+    RF  +YG +G      + A   F +  L   +  E++  G   R FT+I + V+G+LR  K DF  E  N+G+ + V +    E++  + +KK     +P  +G V    +D +  ++ LG+ P +  ++GL+    W
Sbjct:  107 SNEMGTLNIFEFARRFDIEKVVYASSSSVYGGNRKIPFS-----EDDRVDKPISLYASTKRSNELMAHVYHHLYGIKMIGLRFFTVYGEYGR----PDMAYFKFAKNILLGKE-IEVYNYGNMERDFTYISDVVDGILRAIKKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPMQDGDVLRTYADLSKSEKLLGYKPKVTIEEGLKRFCNW 315          
The following BLAST results are available for this feature:
BLAST of FC868536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
UXS1_MOUSE1.862e-1528.83UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN1.862e-1528.83UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]
Y4AF_RHISN3.176e-1529.33Uncharacterized protein y4aF OS=Rhizobium sp. (str... [more]
FCL2_ARATH4.148e-1527.11Putative GDP-L-fucose synthase 2 OS=Arabidopsis th... [more]
FCL1_ORYSJ9.240e-1527.19Probable GDP-L-fucose synthase 1 OS=Oryza sativa s... [more]
UXS1_XENTR5.989e-1427.52UDP-glucuronic acid decarboxylase 1 OS=Xenopus tro... [more]
GALE_METJA8.648e-1328.05Putative UDP-glucose 4-epimerase OS=Methanocaldoco... [more]
FCL_ECOLI2.516e-1224.26GDP-L-fucose synthetase OS=Escherichia coli (strai... [more]
Y1055_METJA5.606e-1225.57Uncharacterized protein MJ1055 OS=Methanocaldococc... [more]

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Properties
Property NameValue
Genbank descriptionC31001F05EF AbioticL1 Citrus clementina cDNA clone C31001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868536 ID=FC868536; Name=FC868536; organism=Citrus clementina; type=EST; length=686bp
ATTCAGTCCAACCACTCTGTCATCATGTATAACAATACCATGATCAGCTT
CAACATGCTTGAGGCTTCTAGGATCAGTGGAGTAAAGAGGTTTTTCTATG
CCTCTAGTGCCTGCATCTATCCCGAATTTAAGCAGCTGGAAACTAACGTA
AGCTTGAAGGAGTCTGATGCCTGGCCCGCTGAGCCTCAAGATGCTTATGG
CTTGGAGAAGCTTGCAAGTGAGGAGTTGTGTAAGCACTACACGAAAGACT
TTGGAATTGAGTGTCGTGTTGGAAGATTCCACAATATTTATGGGCCTTTT
GGAACATGGAAAGGTGGAAGGGAAAAAGCTCCTGCTGCTTTTTGCCGAAA
GGCTCTTACTTCAACTGACAAGTTTGAGATGTGGGGAGATGGACTTCAAA
CTCGATCTTTCACCTTCATTGATGAATGTGTTGAAGGTGTGCTCAGATTG
ACGAAGTCAGACTTCCGTGAGCCAGTGAACATTGGTAGTGATGAGATGGT
TAGCATGAACGAGATGGCTGAGATTGTTCTTAGCTTTGAGGACAAGAAGC
TACCTATCCACCACATTCCTGGCCCTGAGGGTGTCCGTGGTCGTAATTCA
GACAACACACTGATCAAAGAGAAGCTTGGTTGGGCACCATCCATGAAGNT
GAAGGATGGGCTGAGAATTACGTATTTCTGGATCAG
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